co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G25820

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
2	GO:0006903: vesicle targeting	0.00E+00
3	GO:0035266: meristem growth	3.12E-05
4	GO:0007292: female gamete generation	3.12E-05
5	GO:0010421: hydrogen peroxide-mediated programmed cell death	3.12E-05
6	GO:0009805: coumarin biosynthetic process	7.88E-05
7	GO:0051788: response to misfolded protein	7.88E-05
8	GO:0010253: UDP-rhamnose biosynthetic process	1.37E-04
9	GO:0006517: protein deglycosylation	1.37E-04
10	GO:0060968: regulation of gene silencing	1.37E-04
11	GO:0030163: protein catabolic process	1.98E-04
12	GO:0006612: protein targeting to membrane	2.04E-04
13	GO:0006893: Golgi to plasma membrane transport	2.04E-04
14	GO:0006085: acetyl-CoA biosynthetic process	2.76E-04
15	GO:0033356: UDP-L-arabinose metabolic process	2.76E-04
16	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	4.34E-04
17	GO:0048827: phyllome development	4.34E-04
18	GO:0048232: male gamete generation	4.34E-04
19	GO:0006555: methionine metabolic process	4.34E-04
20	GO:0043248: proteasome assembly	4.34E-04
21	GO:0042176: regulation of protein catabolic process	4.34E-04
22	GO:0010315: auxin efflux	4.34E-04
23	GO:0019509: L-methionine salvage from methylthioadenosine	5.20E-04
24	GO:0006744: ubiquinone biosynthetic process	6.07E-04
25	GO:0010078: maintenance of root meristem identity	6.99E-04
26	GO:0006102: isocitrate metabolic process	6.99E-04
27	GO:0006491: N-glycan processing	6.99E-04
28	GO:0009699: phenylpropanoid biosynthetic process	7.94E-04
29	GO:0060321: acceptance of pollen	7.94E-04
30	GO:0048354: mucilage biosynthetic process involved in seed coat development	9.92E-04
31	GO:0048829: root cap development	1.10E-03
32	GO:0051555: flavonol biosynthetic process	1.10E-03
33	GO:0072593: reactive oxygen species metabolic process	1.20E-03
34	GO:0043085: positive regulation of catalytic activity	1.20E-03
35	GO:0010015: root morphogenesis	1.20E-03
36	GO:0055046: microgametogenesis	1.43E-03
37	GO:0009933: meristem structural organization	1.55E-03
38	GO:0090351: seedling development	1.67E-03
39	GO:0009225: nucleotide-sugar metabolic process	1.67E-03
40	GO:0007031: peroxisome organization	1.67E-03
41	GO:0006511: ubiquitin-dependent protein catabolic process	1.71E-03
42	GO:0008299: isoprenoid biosynthetic process	2.05E-03
43	GO:0030433: ubiquitin-dependent ERAD pathway	2.32E-03
44	GO:0019748: secondary metabolic process	2.32E-03
45	GO:0042127: regulation of cell proliferation	2.61E-03
46	GO:0006662: glycerol ether metabolic process	3.05E-03
47	GO:0016192: vesicle-mediated transport	3.36E-03
48	GO:0015031: protein transport	3.84E-03
49	GO:0006904: vesicle docking involved in exocytosis	4.17E-03
50	GO:0030244: cellulose biosynthetic process	5.42E-03
51	GO:0009832: plant-type cell wall biogenesis	5.60E-03
52	GO:0010311: lateral root formation	5.60E-03
53	GO:0006499: N-terminal protein myristoylation	5.79E-03
54	GO:0045087: innate immune response	6.38E-03
55	GO:0034599: cellular response to oxidative stress	6.58E-03
56	GO:0006099: tricarboxylic acid cycle	6.58E-03
57	GO:0006887: exocytosis	7.19E-03
58	GO:0009965: leaf morphogenesis	8.24E-03
59	GO:0009846: pollen germination	8.91E-03
60	GO:0055114: oxidation-reduction process	9.15E-03
61	GO:0048367: shoot system development	1.08E-02
62	GO:0009790: embryo development	1.57E-02
63	GO:0006633: fatty acid biosynthetic process	1.65E-02
64	GO:0071555: cell wall organization	1.69E-02
65	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.91E-02
66	GO:0006470: protein dephosphorylation	1.94E-02
67	GO:0009617: response to bacterium	2.00E-02
68	GO:0009860: pollen tube growth	2.54E-02
69	GO:0046686: response to cadmium ion	2.64E-02
70	GO:0045454: cell redox homeostasis	3.19E-02
71	GO:0006886: intracellular protein transport	3.27E-02
72	GO:0009408: response to heat	3.71E-02
73	GO:0048364: root development	3.82E-02

Rank	GO Term	Adjusted P value
1	GO:0016504: peptidase activator activity	0.00E+00
2	GO:0070577: lysine-acetylated histone binding	0.00E+00
3	GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	3.12E-05
4	GO:0010297: heteropolysaccharide binding	7.88E-05
5	GO:0008460: dTDP-glucose 4,6-dehydratase activity	7.88E-05
6	GO:0010280: UDP-L-rhamnose synthase activity	7.88E-05
7	GO:0050347: trans-octaprenyltranstransferase activity	7.88E-05
8	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	7.88E-05
9	GO:0050377: UDP-glucose 4,6-dehydratase activity	7.88E-05
10	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	1.37E-04
11	GO:0003878: ATP citrate synthase activity	2.04E-04
12	GO:0004449: isocitrate dehydrogenase (NAD+) activity	2.04E-04
13	GO:0070628: proteasome binding	2.76E-04
14	GO:0004659: prenyltransferase activity	2.76E-04
15	GO:0031593: polyubiquitin binding	4.34E-04
16	GO:0036402: proteasome-activating ATPase activity	4.34E-04
17	GO:0016887: ATPase activity	9.92E-04
18	GO:0030234: enzyme regulator activity	1.10E-03
19	GO:0008047: enzyme activator activity	1.10E-03
20	GO:0004161: dimethylallyltranstransferase activity	1.20E-03
21	GO:0017025: TBP-class protein binding	1.67E-03
22	GO:0004190: aspartic-type endopeptidase activity	1.67E-03
23	GO:0043130: ubiquitin binding	1.92E-03
24	GO:0047134: protein-disulfide reductase activity	2.75E-03
25	GO:0004791: thioredoxin-disulfide reductase activity	3.20E-03
26	GO:0016853: isomerase activity	3.20E-03
27	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.84E-03
28	GO:0008237: metallopeptidase activity	4.17E-03
29	GO:0051213: dioxygenase activity	4.52E-03
30	GO:0008375: acetylglucosaminyltransferase activity	4.87E-03
31	GO:0016798: hydrolase activity, acting on glycosyl bonds	5.05E-03
32	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	6.38E-03
33	GO:0051287: NAD binding	8.68E-03
34	GO:0031625: ubiquitin protein ligase binding	1.01E-02
35	GO:0015035: protein disulfide oxidoreductase activity	1.22E-02
36	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.43E-02
37	GO:0042802: identical protein binding	2.09E-02
38	GO:0000287: magnesium ion binding	2.38E-02
39	GO:0050660: flavin adenine dinucleotide binding	2.67E-02
40	GO:0004497: monooxygenase activity	2.81E-02
41	GO:0061630: ubiquitin protein ligase activity	2.91E-02
42	GO:0004722: protein serine/threonine phosphatase activity	3.41E-02
43	GO:0046872: metal ion binding	3.67E-02
44	GO:0009055: electron carrier activity	3.90E-02

Rank	GO Term	Adjusted P value
1	GO:0000502: proteasome complex	8.88E-07
2	GO:0008541: proteasome regulatory particle, lid subcomplex	2.68E-05
3	GO:0030130: clathrin coat of trans-Golgi network vesicle	1.37E-04
4	GO:0030132: clathrin coat of coated pit	1.37E-04
5	GO:0009346: citrate lyase complex	2.04E-04
6	GO:0005829: cytosol	4.63E-04
7	GO:0031597: cytosolic proteasome complex	5.20E-04
8	GO:0031595: nuclear proteasome complex	6.07E-04
9	GO:0031982: vesicle	6.99E-04
10	GO:0008540: proteasome regulatory particle, base subcomplex	9.92E-04
11	GO:0005839: proteasome core complex	2.19E-03
12	GO:0009536: plastid	3.67E-03
13	GO:0000145: exocyst	3.68E-03
14	GO:0032580: Golgi cisterna membrane	4.00E-03
15	GO:0005778: peroxisomal membrane	4.17E-03
16	GO:0005856: cytoskeleton	8.24E-03
17	GO:0009524: phragmoplast	1.46E-02
18	GO:0005783: endoplasmic reticulum	3.31E-02