Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G25540

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006983: ER overload response0.00E+00
2GO:0010401: pectic galactan metabolic process0.00E+00
3GO:0008535: respiratory chain complex IV assembly6.26E-08
4GO:0032469: endoplasmic reticulum calcium ion homeostasis3.00E-05
5GO:0042539: hypotonic salinity response3.00E-05
6GO:0034975: protein folding in endoplasmic reticulum3.00E-05
7GO:0016337: single organismal cell-cell adhesion3.00E-05
8GO:0009868: jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway3.00E-05
9GO:0000303: response to superoxide3.00E-05
10GO:0043066: negative regulation of apoptotic process7.58E-05
11GO:0015012: heparan sulfate proteoglycan biosynthetic process7.58E-05
12GO:0010155: regulation of proton transport7.58E-05
13GO:0006024: glycosaminoglycan biosynthetic process7.58E-05
14GO:0052541: plant-type cell wall cellulose metabolic process7.58E-05
15GO:0033617: mitochondrial respiratory chain complex IV assembly1.97E-04
16GO:0006809: nitric oxide biosynthetic process1.97E-04
17GO:0007112: male meiosis cytokinesis2.67E-04
18GO:0006665: sphingolipid metabolic process3.42E-04
19GO:0001731: formation of translation preinitiation complex4.20E-04
20GO:0009861: jasmonic acid and ethylene-dependent systemic resistance5.02E-04
21GO:0000911: cytokinesis by cell plate formation5.02E-04
22GO:0046470: phosphatidylcholine metabolic process5.88E-04
23GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline6.76E-04
24GO:0009873: ethylene-activated signaling pathway7.45E-04
25GO:0006367: transcription initiation from RNA polymerase II promoter7.68E-04
26GO:0006972: hyperosmotic response7.68E-04
27GO:0009086: methionine biosynthetic process9.61E-04
28GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway9.61E-04
29GO:0006396: RNA processing9.80E-04
30GO:0043069: negative regulation of programmed cell death1.06E-03
31GO:0000038: very long-chain fatty acid metabolic process1.16E-03
32GO:0012501: programmed cell death1.27E-03
33GO:0009790: embryo development1.37E-03
34GO:0010102: lateral root morphogenesis1.38E-03
35GO:0006446: regulation of translational initiation1.50E-03
36GO:2000377: regulation of reactive oxygen species metabolic process1.86E-03
37GO:0043622: cortical microtubule organization1.98E-03
38GO:0010087: phloem or xylem histogenesis2.80E-03
39GO:0010193: response to ozone3.40E-03
40GO:0016032: viral process3.55E-03
41GO:0045454: cell redox homeostasis3.63E-03
42GO:0030163: protein catabolic process3.71E-03
43GO:0006464: cellular protein modification process3.87E-03
44GO:0016042: lipid catabolic process4.35E-03
45GO:0009816: defense response to bacterium, incompatible interaction4.53E-03
46GO:0008219: cell death5.23E-03
47GO:0009867: jasmonic acid mediated signaling pathway6.16E-03
48GO:0009637: response to blue light6.16E-03
49GO:0009738: abscisic acid-activated signaling pathway7.65E-03
50GO:0009846: pollen germination8.60E-03
51GO:0006486: protein glycosylation9.03E-03
52GO:0009620: response to fungus1.09E-02
53GO:0042545: cell wall modification1.13E-02
54GO:0009414: response to water deprivation1.57E-02
55GO:0006413: translational initiation1.62E-02
56GO:0045490: pectin catabolic process1.70E-02
57GO:0006470: protein dephosphorylation1.87E-02
58GO:0009617: response to bacterium1.93E-02
59GO:0010468: regulation of gene expression1.93E-02
60GO:0006970: response to osmotic stress2.45E-02
61GO:0009723: response to ethylene2.58E-02
62GO:0016192: vesicle-mediated transport2.81E-02
63GO:0044550: secondary metabolite biosynthetic process2.88E-02
64GO:0009737: response to abscisic acid3.43E-02
65GO:0032259: methylation3.47E-02
66GO:0006629: lipid metabolic process3.58E-02
67GO:0009408: response to heat3.58E-02
68GO:0016310: phosphorylation3.94E-02
RankGO TermAdjusted P value
1GO:0047150: betaine-homocysteine S-methyltransferase activity3.00E-05
2GO:0004656: procollagen-proline 4-dioxygenase activity5.02E-04
3GO:0003950: NAD+ ADP-ribosyltransferase activity5.02E-04
4GO:0004525: ribonuclease III activity6.76E-04
5GO:0004630: phospholipase D activity7.68E-04
6GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity7.68E-04
7GO:0005262: calcium channel activity1.38E-03
8GO:0031418: L-ascorbic acid binding1.86E-03
9GO:0003743: translation initiation factor activity1.87E-03
10GO:0035251: UDP-glucosyltransferase activity2.11E-03
11GO:0004707: MAP kinase activity2.11E-03
12GO:0003756: protein disulfide isomerase activity2.52E-03
13GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.71E-03
14GO:0004722: protein serine/threonine phosphatase activity3.98E-03
15GO:0004004: ATP-dependent RNA helicase activity4.88E-03
16GO:0004806: triglyceride lipase activity4.88E-03
17GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors6.16E-03
18GO:0045330: aspartyl esterase activity9.70E-03
19GO:0030599: pectinesterase activity1.11E-02
20GO:0015035: protein disulfide oxidoreductase activity1.18E-02
21GO:0004386: helicase activity1.23E-02
22GO:0005509: calcium ion binding1.48E-02
23GO:0015144: carbohydrate transmembrane transporter activity1.54E-02
24GO:0005506: iron ion binding1.58E-02
25GO:0044212: transcription regulatory region DNA binding1.61E-02
26GO:0046910: pectinesterase inhibitor activity1.62E-02
27GO:0005351: sugar:proton symporter activity1.68E-02
28GO:0008168: methyltransferase activity2.26E-02
29GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen3.25E-02
30GO:0016787: hydrolase activity3.45E-02
31GO:0005515: protein binding3.98E-02
RankGO TermAdjusted P value
1GO:0005674: transcription factor TFIIF complex0.00E+00
2GO:0005789: endoplasmic reticulum membrane1.20E-04
3GO:0016282: eukaryotic 43S preinitiation complex4.20E-04
4GO:0033290: eukaryotic 48S preinitiation complex5.02E-04
5GO:0016363: nuclear matrix5.02E-04
6GO:0030176: integral component of endoplasmic reticulum membrane1.61E-03
7GO:0005783: endoplasmic reticulum1.93E-03
8GO:0009504: cell plate3.24E-03
9GO:0071944: cell periphery3.71E-03
10GO:0005743: mitochondrial inner membrane4.16E-03
11GO:0005635: nuclear envelope9.47E-03
12GO:0005737: cytoplasm1.16E-02
13GO:0016021: integral component of membrane1.29E-02
14GO:0009543: chloroplast thylakoid lumen1.36E-02
15GO:0005623: cell1.38E-02
16GO:0005874: microtubule2.64E-02
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Gene type



Gene DE type