co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G25440

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032260: response to jasmonic acid stimulus involved in jasmonic acid and ethylene-dependent systemic resistance	0.00E+00
2	GO:1900067: regulation of cellular response to alkaline pH	0.00E+00
3	GO:0090359: negative regulation of abscisic acid biosynthetic process	0.00E+00
4	GO:0015690: aluminum cation transport	0.00E+00
5	GO:1900367: positive regulation of defense response to insect	0.00E+00
6	GO:0006987: activation of signaling protein activity involved in unfolded protein response	0.00E+00
7	GO:0010324: membrane invagination	0.00E+00
8	GO:0071327: cellular response to trehalose stimulus	0.00E+00
9	GO:0043048: dolichyl monophosphate biosynthetic process	0.00E+00
10	GO:0010200: response to chitin	1.51E-06
11	GO:0006468: protein phosphorylation	3.43E-06
12	GO:0006952: defense response	5.89E-06
13	GO:0010150: leaf senescence	1.30E-05
14	GO:0009625: response to insect	2.27E-05
15	GO:0006979: response to oxidative stress	2.95E-05
16	GO:0060548: negative regulation of cell death	9.74E-05
17	GO:0042742: defense response to bacterium	1.27E-04
18	GO:0010225: response to UV-C	1.51E-04
19	GO:0009697: salicylic acid biosynthetic process	1.51E-04
20	GO:0050832: defense response to fungus	1.53E-04
21	GO:0009643: photosynthetic acclimation	2.16E-04
22	GO:0042372: phylloquinone biosynthetic process	2.91E-04
23	GO:0031348: negative regulation of defense response	3.06E-04
24	GO:1900056: negative regulation of leaf senescence	3.76E-04
25	GO:0051938: L-glutamate import	4.05E-04
26	GO:0015760: glucose-6-phosphate transport	4.05E-04
27	GO:0046256: 2,4,6-trinitrotoluene catabolic process	4.05E-04
28	GO:0019567: arabinose biosynthetic process	4.05E-04
29	GO:0080173: male-female gamete recognition during double fertilization	4.05E-04
30	GO:0010421: hydrogen peroxide-mediated programmed cell death	4.05E-04
31	GO:0033306: phytol metabolic process	4.05E-04
32	GO:0009700: indole phytoalexin biosynthetic process	4.05E-04
33	GO:1901183: positive regulation of camalexin biosynthetic process	4.05E-04
34	GO:0009270: response to humidity	4.05E-04
35	GO:0006643: membrane lipid metabolic process	4.05E-04
36	GO:0048508: embryonic meristem development	4.05E-04
37	GO:0042391: regulation of membrane potential	4.74E-04
38	GO:0009646: response to absence of light	5.73E-04
39	GO:0010120: camalexin biosynthetic process	5.75E-04
40	GO:2000031: regulation of salicylic acid mediated signaling pathway	5.75E-04
41	GO:0006098: pentose-phosphate shunt	6.89E-04
42	GO:0010112: regulation of systemic acquired resistance	6.89E-04
43	GO:0006486: protein glycosylation	7.32E-04
44	GO:0007166: cell surface receptor signaling pathway	7.74E-04
45	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	8.13E-04
46	GO:0019521: D-gluconate metabolic process	8.76E-04
47	GO:0010115: regulation of abscisic acid biosynthetic process	8.76E-04
48	GO:0044419: interspecies interaction between organisms	8.76E-04
49	GO:0009945: radial axis specification	8.76E-04
50	GO:0015712: hexose phosphate transport	8.76E-04
51	GO:0010271: regulation of chlorophyll catabolic process	8.76E-04
52	GO:0051258: protein polymerization	8.76E-04
53	GO:0019725: cellular homeostasis	8.76E-04
54	GO:0019441: tryptophan catabolic process to kynurenine	8.76E-04
55	GO:0043091: L-arginine import	8.76E-04
56	GO:0015914: phospholipid transport	8.76E-04
57	GO:0006123: mitochondrial electron transport, cytochrome c to oxygen	8.76E-04
58	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	8.76E-04
59	GO:0009838: abscission	8.76E-04
60	GO:0015802: basic amino acid transport	8.76E-04
61	GO:0010618: aerenchyma formation	8.76E-04
62	GO:0080181: lateral root branching	8.76E-04
63	GO:0009611: response to wounding	9.58E-04
64	GO:0009751: response to salicylic acid	9.77E-04
65	GO:0007165: signal transduction	1.14E-03
66	GO:0009816: defense response to bacterium, incompatible interaction	1.16E-03
67	GO:0012501: programmed cell death	1.24E-03
68	GO:0055046: microgametogenesis	1.41E-03
69	GO:0048281: inflorescence morphogenesis	1.42E-03
70	GO:0015695: organic cation transport	1.42E-03
71	GO:0015714: phosphoenolpyruvate transport	1.42E-03
72	GO:1900055: regulation of leaf senescence	1.42E-03
73	GO:0010498: proteasomal protein catabolic process	1.42E-03
74	GO:0006954: inflammatory response	1.42E-03
75	GO:0034051: negative regulation of plant-type hypersensitive response	1.42E-03
76	GO:1900140: regulation of seedling development	1.42E-03
77	GO:0035436: triose phosphate transmembrane transport	1.42E-03
78	GO:0045793: positive regulation of cell size	1.42E-03
79	GO:0010186: positive regulation of cellular defense response	1.42E-03
80	GO:0009266: response to temperature stimulus	1.59E-03
81	GO:0009407: toxin catabolic process	1.72E-03
82	GO:0009867: jasmonic acid mediated signaling pathway	2.05E-03
83	GO:0015696: ammonium transport	2.06E-03
84	GO:0002679: respiratory burst involved in defense response	2.06E-03
85	GO:0051289: protein homotetramerization	2.06E-03
86	GO:0046836: glycolipid transport	2.06E-03
87	GO:0048194: Golgi vesicle budding	2.06E-03
88	GO:2000377: regulation of reactive oxygen species metabolic process	2.20E-03
89	GO:0048638: regulation of developmental growth	2.76E-03
90	GO:0009652: thigmotropism	2.76E-03
91	GO:0072488: ammonium transmembrane transport	2.76E-03
92	GO:0033358: UDP-L-arabinose biosynthetic process	2.76E-03
93	GO:0010508: positive regulation of autophagy	2.76E-03
94	GO:0015713: phosphoglycerate transport	2.76E-03
95	GO:0080142: regulation of salicylic acid biosynthetic process	2.76E-03
96	GO:1901141: regulation of lignin biosynthetic process	2.76E-03
97	GO:0010109: regulation of photosynthesis	2.76E-03
98	GO:0045227: capsule polysaccharide biosynthetic process	2.76E-03
99	GO:0010483: pollen tube reception	2.76E-03
100	GO:0051707: response to other organism	2.84E-03
101	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.93E-03
102	GO:0071456: cellular response to hypoxia	2.93E-03
103	GO:0016567: protein ubiquitination	3.24E-03
104	GO:0009636: response to toxic substance	3.30E-03
105	GO:0016094: polyprenol biosynthetic process	3.54E-03
106	GO:0034052: positive regulation of plant-type hypersensitive response	3.54E-03
107	GO:0009164: nucleoside catabolic process	3.54E-03
108	GO:0031347: regulation of defense response	3.63E-03
109	GO:0009617: response to bacterium	3.77E-03
110	GO:0006828: manganese ion transport	4.38E-03
111	GO:0018258: protein O-linked glycosylation via hydroxyproline	4.38E-03
112	GO:0009117: nucleotide metabolic process	4.38E-03
113	GO:0006574: valine catabolic process	4.38E-03
114	GO:0009759: indole glucosinolate biosynthetic process	4.38E-03
115	GO:0010942: positive regulation of cell death	4.38E-03
116	GO:0010405: arabinogalactan protein metabolic process	4.38E-03
117	GO:0015691: cadmium ion transport	4.38E-03
118	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	4.38E-03
119	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	5.27E-03
120	GO:0009612: response to mechanical stimulus	5.27E-03
121	GO:0009094: L-phenylalanine biosynthetic process	5.27E-03
122	GO:0009942: longitudinal axis specification	5.27E-03
123	GO:0010310: regulation of hydrogen peroxide metabolic process	5.27E-03
124	GO:0010193: response to ozone	5.42E-03
125	GO:0009626: plant-type hypersensitive response	5.58E-03
126	GO:0009620: response to fungus	5.81E-03
127	GO:0043090: amino acid import	6.23E-03
128	GO:0071446: cellular response to salicylic acid stimulus	6.23E-03
129	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	6.23E-03
130	GO:0050829: defense response to Gram-negative bacterium	6.23E-03
131	GO:0010044: response to aluminum ion	6.23E-03
132	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	6.23E-03
133	GO:0046470: phosphatidylcholine metabolic process	6.23E-03
134	GO:0009624: response to nematode	6.52E-03
135	GO:0009787: regulation of abscisic acid-activated signaling pathway	7.25E-03
136	GO:0009819: drought recovery	7.25E-03
137	GO:0030091: protein repair	7.25E-03
138	GO:0080167: response to karrikin	7.77E-03
139	GO:0030968: endoplasmic reticulum unfolded protein response	8.32E-03
140	GO:0010099: regulation of photomorphogenesis	8.32E-03
141	GO:0009737: response to abscisic acid	8.50E-03
142	GO:0009627: systemic acquired resistance	8.77E-03
143	GO:0009051: pentose-phosphate shunt, oxidative branch	9.45E-03
144	GO:0051865: protein autoubiquitination	9.45E-03
145	GO:0019432: triglyceride biosynthetic process	9.45E-03
146	GO:0046916: cellular transition metal ion homeostasis	9.45E-03
147	GO:0048354: mucilage biosynthetic process involved in seed coat development	1.06E-02
148	GO:0010380: regulation of chlorophyll biosynthetic process	1.06E-02
149	GO:1900426: positive regulation of defense response to bacterium	1.06E-02
150	GO:0009832: plant-type cell wall biogenesis	1.08E-02
151	GO:0010119: regulation of stomatal movement	1.19E-02
152	GO:0007064: mitotic sister chromatid cohesion	1.19E-02
153	GO:0006032: chitin catabolic process	1.19E-02
154	GO:0043069: negative regulation of programmed cell death	1.19E-02
155	GO:0006816: calcium ion transport	1.31E-02
156	GO:1903507: negative regulation of nucleic acid-templated transcription	1.31E-02
157	GO:0048229: gametophyte development	1.31E-02
158	GO:0032259: methylation	1.31E-02
159	GO:0008361: regulation of cell size	1.45E-02
160	GO:0002213: defense response to insect	1.45E-02
161	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.45E-02
162	GO:0030001: metal ion transport	1.49E-02
163	GO:0006470: protein dephosphorylation	1.55E-02
164	GO:2000012: regulation of auxin polar transport	1.58E-02
165	GO:0006006: glucose metabolic process	1.58E-02
166	GO:0009744: response to sucrose	1.69E-02
167	GO:0009969: xyloglucan biosynthetic process	1.87E-02
168	GO:0009225: nucleotide-sugar metabolic process	1.87E-02
169	GO:0070588: calcium ion transmembrane transport	1.87E-02
170	GO:0006855: drug transmembrane transport	1.97E-02
171	GO:0009809: lignin biosynthetic process	2.28E-02
172	GO:0003333: amino acid transmembrane transport	2.50E-02
173	GO:0016998: cell wall macromolecule catabolic process	2.50E-02
174	GO:0006012: galactose metabolic process	2.83E-02
175	GO:0010584: pollen exine formation	3.01E-02
176	GO:0009561: megagametogenesis	3.01E-02
177	GO:0009738: abscisic acid-activated signaling pathway	3.13E-02
178	GO:0070417: cellular response to cold	3.19E-02
179	GO:0009414: response to water deprivation	3.32E-02
180	GO:0042631: cellular response to water deprivation	3.37E-02
181	GO:0000271: polysaccharide biosynthetic process	3.37E-02
182	GO:0000413: protein peptidyl-prolyl isomerization	3.37E-02
183	GO:0010118: stomatal movement	3.37E-02
184	GO:0009742: brassinosteroid mediated signaling pathway	3.43E-02
185	GO:0045489: pectin biosynthetic process	3.55E-02
186	GO:0010197: polar nucleus fusion	3.55E-02
187	GO:0045892: negative regulation of transcription, DNA-templated	3.80E-02
188	GO:0009749: response to glucose	3.93E-02
189	GO:0008654: phospholipid biosynthetic process	3.93E-02
190	GO:0000302: response to reactive oxygen species	4.12E-02
191	GO:0016032: viral process	4.32E-02
192	GO:0019761: glucosinolate biosynthetic process	4.32E-02
193	GO:0009790: embryo development	4.72E-02
194	GO:0009408: response to heat	4.82E-02
195	GO:0006904: vesicle docking involved in exocytosis	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0010298: dihydrocamalexic acid decarboxylase activity	0.00E+00
2	GO:0004168: dolichol kinase activity	0.00E+00
3	GO:0004674: protein serine/threonine kinase activity	1.16E-07
4	GO:0016301: kinase activity	5.13E-07
5	GO:0005509: calcium ion binding	9.63E-05
6	GO:0005524: ATP binding	1.48E-04
7	GO:0030553: cGMP binding	1.52E-04
8	GO:0030552: cAMP binding	1.52E-04
9	GO:0005216: ion channel activity	2.37E-04
10	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	2.91E-04
11	GO:0004012: phospholipid-translocating ATPase activity	2.91E-04
12	GO:0043295: glutathione binding	3.76E-04
13	GO:0008909: isochorismate synthase activity	4.05E-04
14	GO:0019707: protein-cysteine S-acyltransferase activity	4.05E-04
15	GO:2001147: camalexin binding	4.05E-04
16	GO:0031127: alpha-(1,2)-fucosyltransferase activity	4.05E-04
17	GO:2001227: quercitrin binding	4.05E-04
18	GO:0004714: transmembrane receptor protein tyrosine kinase activity	4.71E-04
19	GO:0030551: cyclic nucleotide binding	4.74E-04
20	GO:0005249: voltage-gated potassium channel activity	4.74E-04
21	GO:0019901: protein kinase binding	6.28E-04
22	GO:0015152: glucose-6-phosphate transmembrane transporter activity	8.76E-04
23	GO:0001671: ATPase activator activity	8.76E-04
24	GO:0004061: arylformamidase activity	8.76E-04
25	GO:0004385: guanylate kinase activity	8.76E-04
26	GO:0047364: desulfoglucosinolate sulfotransferase activity	8.76E-04
27	GO:0004568: chitinase activity	9.46E-04
28	GO:0008171: O-methyltransferase activity	9.46E-04
29	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.41E-03
30	GO:0042409: caffeoyl-CoA O-methyltransferase activity	1.42E-03
31	GO:0071917: triose-phosphate transmembrane transporter activity	1.42E-03
32	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	1.42E-03
33	GO:0015181: arginine transmembrane transporter activity	2.06E-03
34	GO:0015189: L-lysine transmembrane transporter activity	2.06E-03
35	GO:0017089: glycolipid transporter activity	2.06E-03
36	GO:0004364: glutathione transferase activity	2.70E-03
37	GO:0015369: calcium:proton antiporter activity	2.76E-03
38	GO:0005313: L-glutamate transmembrane transporter activity	2.76E-03
39	GO:0015120: phosphoglycerate transmembrane transporter activity	2.76E-03
40	GO:0015368: calcium:cation antiporter activity	2.76E-03
41	GO:0050373: UDP-arabinose 4-epimerase activity	2.76E-03
42	GO:0047769: arogenate dehydratase activity	2.76E-03
43	GO:0004737: pyruvate decarboxylase activity	2.76E-03
44	GO:0004345: glucose-6-phosphate dehydrogenase activity	2.76E-03
45	GO:0004664: prephenate dehydratase activity	2.76E-03
46	GO:0051861: glycolipid binding	2.76E-03
47	GO:0004842: ubiquitin-protein transferase activity	3.07E-03
48	GO:0005546: phosphatidylinositol-4,5-bisphosphate binding	3.54E-03
49	GO:0002094: polyprenyltransferase activity	3.54E-03
50	GO:0005496: steroid binding	3.54E-03
51	GO:0047631: ADP-ribose diphosphatase activity	3.54E-03
52	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	3.54E-03
53	GO:0000210: NAD+ diphosphatase activity	4.38E-03
54	GO:0008519: ammonium transmembrane transporter activity	4.38E-03
55	GO:0030976: thiamine pyrophosphate binding	4.38E-03
56	GO:0004605: phosphatidate cytidylyltransferase activity	4.38E-03
57	GO:1990714: hydroxyproline O-galactosyltransferase activity	4.38E-03
58	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	5.27E-03
59	GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	5.27E-03
60	GO:0005261: cation channel activity	5.27E-03
61	GO:0004144: diacylglycerol O-acyltransferase activity	5.27E-03
62	GO:0003978: UDP-glucose 4-epimerase activity	5.27E-03
63	GO:0030246: carbohydrate binding	5.62E-03
64	GO:0016831: carboxy-lyase activity	6.23E-03
65	GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity	6.23E-03
66	GO:0043531: ADP binding	6.44E-03
67	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	6.98E-03
68	GO:0005544: calcium-dependent phospholipid binding	7.25E-03
69	GO:0004033: aldo-keto reductase (NADP) activity	7.25E-03
70	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	8.32E-03
71	GO:0004630: phospholipase D activity	8.32E-03
72	GO:0008417: fucosyltransferase activity	9.45E-03
73	GO:0071949: FAD binding	9.45E-03
74	GO:0004672: protein kinase activity	9.78E-03
75	GO:0015174: basic amino acid transmembrane transporter activity	1.06E-02
76	GO:0047617: acyl-CoA hydrolase activity	1.06E-02
77	GO:0015238: drug transmembrane transporter activity	1.08E-02
78	GO:0004722: protein serine/threonine phosphatase activity	1.17E-02
79	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.20E-02
80	GO:0015297: antiporter activity	1.24E-02
81	GO:0008559: xenobiotic-transporting ATPase activity	1.31E-02
82	GO:0004521: endoribonuclease activity	1.45E-02
83	GO:0008378: galactosyltransferase activity	1.45E-02
84	GO:0050661: NADP binding	1.49E-02
85	GO:0005388: calcium-transporting ATPase activity	1.58E-02
86	GO:0005315: inorganic phosphate transmembrane transporter activity	1.58E-02
87	GO:0008146: sulfotransferase activity	1.87E-02
88	GO:0004190: aspartic-type endopeptidase activity	1.87E-02
89	GO:0005516: calmodulin binding	2.10E-02
90	GO:0003714: transcription corepressor activity	2.18E-02
91	GO:0003954: NADH dehydrogenase activity	2.18E-02
92	GO:0000287: magnesium ion binding	2.23E-02
93	GO:0043424: protein histidine kinase binding	2.33E-02
94	GO:0051087: chaperone binding	2.33E-02
95	GO:0016298: lipase activity	2.36E-02
96	GO:0004707: MAP kinase activity	2.50E-02
97	GO:0033612: receptor serine/threonine kinase binding	2.50E-02
98	GO:0019706: protein-cysteine S-palmitoyltransferase activity	2.50E-02
99	GO:0015171: amino acid transmembrane transporter activity	2.52E-02
100	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.66E-02
101	GO:0004497: monooxygenase activity	2.98E-02
102	GO:0004499: N,N-dimethylaniline monooxygenase activity	3.01E-02
103	GO:0010181: FMN binding	3.74E-02
104	GO:0016758: transferase activity, transferring hexosyl groups	3.94E-02
105	GO:0004197: cysteine-type endopeptidase activity	4.32E-02

Rank	GO Term	Adjusted P value
1	GO:0019822: P4 peroxisome	0.00E+00
2	GO:0005886: plasma membrane	7.87E-12
3	GO:0016021: integral component of membrane	3.66E-07
4	GO:0000138: Golgi trans cisterna	4.05E-04
5	GO:0031304: intrinsic component of mitochondrial inner membrane	8.76E-04
6	GO:0005901: caveola	8.76E-04
7	GO:0042406: extrinsic component of endoplasmic reticulum membrane	1.42E-03
8	GO:0008287: protein serine/threonine phosphatase complex	1.42E-03
9	GO:0070062: extracellular exosome	2.06E-03
10	GO:0005777: peroxisome	4.11E-03
11	GO:0005887: integral component of plasma membrane	6.53E-03
12	GO:0032580: Golgi cisterna membrane	6.57E-03
13	GO:0031012: extracellular matrix	1.58E-02
14	GO:0030176: integral component of endoplasmic reticulum membrane	1.87E-02
15	GO:0005769: early endosome	2.02E-02
16	GO:0005758: mitochondrial intermembrane space	2.18E-02
17	GO:0031225: anchored component of membrane	2.23E-02
18	GO:0070469: respiratory chain	2.33E-02
19	GO:0009506: plasmodesma	4.00E-02
20	GO:0000145: exocyst	4.32E-02
21	GO:0005737: cytoplasm	4.39E-02