co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G24000

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070455: positive regulation of heme biosynthetic process	0.00E+00
2	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
3	GO:0046486: glycerolipid metabolic process	0.00E+00
4	GO:0006907: pinocytosis	0.00E+00
5	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
6	GO:0045014: negative regulation of transcription by glucose	0.00E+00
7	GO:0010583: response to cyclopentenone	3.97E-05
8	GO:0009451: RNA modification	5.01E-05
9	GO:0007050: cell cycle arrest	2.70E-04
10	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	3.24E-04
11	GO:0010495: long-distance posttranscriptional gene silencing	3.24E-04
12	GO:0010070: zygote asymmetric cell division	3.24E-04
13	GO:0051013: microtubule severing	3.24E-04
14	GO:0045786: negative regulation of cell cycle	3.24E-04
15	GO:0007186: G-protein coupled receptor signaling pathway	4.17E-04
16	GO:0000373: Group II intron splicing	5.01E-04
17	GO:0009793: embryo development ending in seed dormancy	6.00E-04
18	GO:0010069: zygote asymmetric cytokinesis in embryo sac	7.07E-04
19	GO:0080175: phragmoplast microtubule organization	7.07E-04
20	GO:0006650: glycerophospholipid metabolic process	7.07E-04
21	GO:0043039: tRNA aminoacylation	7.07E-04
22	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.14E-03
23	GO:0046168: glycerol-3-phosphate catabolic process	1.15E-03
24	GO:0070919: production of siRNA involved in chromatin silencing by small RNA	1.15E-03
25	GO:0006518: peptide metabolic process	1.15E-03
26	GO:0042780: tRNA 3'-end processing	1.15E-03
27	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	1.15E-03
28	GO:0034090: maintenance of meiotic sister chromatid cohesion	1.15E-03
29	GO:0009825: multidimensional cell growth	1.29E-03
30	GO:0007276: gamete generation	1.65E-03
31	GO:0006072: glycerol-3-phosphate metabolic process	1.65E-03
32	GO:0033014: tetrapyrrole biosynthetic process	1.65E-03
33	GO:0045017: glycerolipid biosynthetic process	1.65E-03
34	GO:0009956: radial pattern formation	2.21E-03
35	GO:0042127: regulation of cell proliferation	2.50E-03
36	GO:0006364: rRNA processing	2.73E-03
37	GO:0009616: virus induced gene silencing	2.82E-03
38	GO:0009696: salicylic acid metabolic process	2.82E-03
39	GO:0051225: spindle assembly	2.82E-03
40	GO:0000271: polysaccharide biosynthetic process	2.93E-03
41	GO:0045489: pectin biosynthetic process	3.16E-03
42	GO:0009958: positive gravitropism	3.16E-03
43	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	3.49E-03
44	GO:0016458: gene silencing	3.49E-03
45	GO:0035194: posttranscriptional gene silencing by RNA	3.49E-03
46	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	3.49E-03
47	GO:0009942: longitudinal axis specification	4.20E-03
48	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	4.20E-03
49	GO:0051726: regulation of cell cycle	4.60E-03
50	GO:0000082: G1/S transition of mitotic cell cycle	4.95E-03
51	GO:0010444: guard mother cell differentiation	4.95E-03
52	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	4.95E-03
53	GO:0006401: RNA catabolic process	4.95E-03
54	GO:0009610: response to symbiotic fungus	4.95E-03
55	GO:0010492: maintenance of shoot apical meristem identity	5.76E-03
56	GO:0048564: photosystem I assembly	5.76E-03
57	GO:0045292: mRNA cis splicing, via spliceosome	5.76E-03
58	GO:0009416: response to light stimulus	5.83E-03
59	GO:0009627: systemic acquired resistance	6.29E-03
60	GO:0009657: plastid organization	6.60E-03
61	GO:0032544: plastid translation	6.60E-03
62	GO:0007389: pattern specification process	6.60E-03
63	GO:0015995: chlorophyll biosynthetic process	6.63E-03
64	GO:0051301: cell division	6.77E-03
65	GO:0046916: cellular transition metal ion homeostasis	7.48E-03
66	GO:0006783: heme biosynthetic process	7.48E-03
67	GO:0048589: developmental growth	7.48E-03
68	GO:0009056: catabolic process	7.48E-03
69	GO:0009832: plant-type cell wall biogenesis	7.73E-03
70	GO:0006811: ion transport	8.11E-03
71	GO:1900865: chloroplast RNA modification	8.41E-03
72	GO:0016051: carbohydrate biosynthetic process	9.33E-03
73	GO:0006782: protoporphyrinogen IX biosynthetic process	9.37E-03
74	GO:0030422: production of siRNA involved in RNA interference	9.37E-03
75	GO:0048829: root cap development	9.37E-03
76	GO:0016441: posttranscriptional gene silencing	9.37E-03
77	GO:0010192: mucilage biosynthetic process	9.37E-03
78	GO:0009089: lysine biosynthetic process via diaminopimelate	1.04E-02
79	GO:0009750: response to fructose	1.04E-02
80	GO:0016485: protein processing	1.04E-02
81	GO:0030001: metal ion transport	1.06E-02
82	GO:0005983: starch catabolic process	1.14E-02
83	GO:0045037: protein import into chloroplast stroma	1.14E-02
84	GO:0010152: pollen maturation	1.14E-02
85	GO:0009926: auxin polar transport	1.21E-02
86	GO:0009744: response to sucrose	1.21E-02
87	GO:0010588: cotyledon vascular tissue pattern formation	1.25E-02
88	GO:0009718: anthocyanin-containing compound biosynthetic process	1.25E-02
89	GO:0009767: photosynthetic electron transport chain	1.25E-02
90	GO:0010020: chloroplast fission	1.36E-02
91	GO:0009933: meristem structural organization	1.36E-02
92	GO:0009887: animal organ morphogenesis	1.36E-02
93	GO:0010540: basipetal auxin transport	1.36E-02
94	GO:0006302: double-strand break repair	1.36E-02
95	GO:0009734: auxin-activated signaling pathway	1.42E-02
96	GO:0080188: RNA-directed DNA methylation	1.48E-02
97	GO:0009658: chloroplast organization	1.50E-02
98	GO:0006468: protein phosphorylation	1.59E-02
99	GO:0006863: purine nucleobase transport	1.60E-02
100	GO:0009833: plant-type primary cell wall biogenesis	1.60E-02
101	GO:0080147: root hair cell development	1.72E-02
102	GO:0006418: tRNA aminoacylation for protein translation	1.84E-02
103	GO:0006874: cellular calcium ion homeostasis	1.84E-02
104	GO:0043622: cortical microtubule organization	1.84E-02
105	GO:0006306: DNA methylation	1.97E-02
106	GO:0051321: meiotic cell cycle	1.97E-02
107	GO:0003333: amino acid transmembrane transport	1.97E-02
108	GO:0048316: seed development	1.99E-02
109	GO:0016226: iron-sulfur cluster assembly	2.10E-02
110	GO:0009686: gibberellin biosynthetic process	2.23E-02
111	GO:0016567: protein ubiquitination	2.24E-02
112	GO:0048443: stamen development	2.37E-02
113	GO:0006284: base-excision repair	2.37E-02
114	GO:0010091: trichome branching	2.37E-02
115	GO:0000226: microtubule cytoskeleton organization	2.65E-02
116	GO:0048653: anther development	2.65E-02
117	GO:0010305: leaf vascular tissue pattern formation	2.80E-02
118	GO:0009741: response to brassinosteroid	2.80E-02
119	GO:0009791: post-embryonic development	3.10E-02
120	GO:0009749: response to glucose	3.10E-02
121	GO:0008654: phospholipid biosynthetic process	3.10E-02
122	GO:0080156: mitochondrial mRNA modification	3.25E-02
123	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.25E-02
124	GO:0002229: defense response to oomycetes	3.25E-02
125	GO:0006397: mRNA processing	3.38E-02
126	GO:0031047: gene silencing by RNA	3.41E-02
127	GO:1901657: glycosyl compound metabolic process	3.57E-02
128	GO:0019760: glucosinolate metabolic process	3.73E-02
129	GO:0010252: auxin homeostasis	3.73E-02
130	GO:0009639: response to red or far red light	3.73E-02
131	GO:0005975: carbohydrate metabolic process	3.96E-02
132	GO:0000910: cytokinesis	4.06E-02
133	GO:0016126: sterol biosynthetic process	4.23E-02
134	GO:0006974: cellular response to DNA damage stimulus	4.57E-02
135	GO:0010411: xyloglucan metabolic process	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0098519: nucleotide phosphatase activity, acting on free nucleotides	0.00E+00
2	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
3	GO:0008859: exoribonuclease II activity	0.00E+00
4	GO:0004831: tyrosine-tRNA ligase activity	3.24E-04
5	GO:0008568: microtubule-severing ATPase activity	3.24E-04
6	GO:0080062: cytokinin 9-beta-glucosyltransferase activity	3.24E-04
7	GO:0047807: cytokinin 7-beta-glucosyltransferase activity	3.24E-04
8	GO:0008836: diaminopimelate decarboxylase activity	3.24E-04
9	GO:0004519: endonuclease activity	6.14E-04
10	GO:0004109: coproporphyrinogen oxidase activity	7.07E-04
11	GO:0008805: carbon-monoxide oxygenase activity	7.07E-04
12	GO:0019156: isoamylase activity	7.07E-04
13	GO:0010296: prenylcysteine methylesterase activity	7.07E-04
14	GO:0004047: aminomethyltransferase activity	7.07E-04
15	GO:0042781: 3'-tRNA processing endoribonuclease activity	1.15E-03
16	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	1.15E-03
17	GO:0016707: gibberellin 3-beta-dioxygenase activity	1.15E-03
18	GO:0004871: signal transducer activity	1.59E-03
19	GO:0080031: methyl salicylate esterase activity	1.65E-03
20	GO:0004540: ribonuclease activity	1.93E-03
21	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.11E-03
22	GO:0010328: auxin influx transmembrane transporter activity	2.21E-03
23	GO:0043495: protein anchor	2.21E-03
24	GO:0004930: G-protein coupled receptor activity	2.21E-03
25	GO:0010011: auxin binding	2.21E-03
26	GO:0008725: DNA-3-methyladenine glycosylase activity	2.82E-03
27	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	3.16E-03
28	GO:0003723: RNA binding	3.22E-03
29	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	3.49E-03
30	GO:0030332: cyclin binding	3.49E-03
31	GO:0004556: alpha-amylase activity	3.49E-03
32	GO:0004462: lactoylglutathione lyase activity	3.49E-03
33	GO:0003968: RNA-directed 5'-3' RNA polymerase activity	3.49E-03
34	GO:0080030: methyl indole-3-acetate esterase activity	3.49E-03
35	GO:0019901: protein kinase binding	3.64E-03
36	GO:0019899: enzyme binding	4.95E-03
37	GO:0046914: transition metal ion binding	6.60E-03
38	GO:0003724: RNA helicase activity	6.60E-03
39	GO:0008236: serine-type peptidase activity	6.99E-03
40	GO:0004222: metalloendopeptidase activity	8.11E-03
41	GO:0009672: auxin:proton symporter activity	8.41E-03
42	GO:0008327: methyl-CpG binding	1.04E-02
43	GO:0000175: 3'-5'-exoribonuclease activity	1.25E-02
44	GO:0010329: auxin efflux transmembrane transporter activity	1.25E-02
45	GO:0009982: pseudouridine synthase activity	1.25E-02
46	GO:0043621: protein self-association	1.31E-02
47	GO:0004535: poly(A)-specific ribonuclease activity	1.36E-02
48	GO:0005217: intracellular ligand-gated ion channel activity	1.48E-02
49	GO:0004970: ionotropic glutamate receptor activity	1.48E-02
50	GO:0016301: kinase activity	1.56E-02
51	GO:0008134: transcription factor binding	1.72E-02
52	GO:0005345: purine nucleobase transmembrane transporter activity	1.84E-02
53	GO:0008408: 3'-5' exonuclease activity	1.97E-02
54	GO:0016760: cellulose synthase (UDP-forming) activity	2.23E-02
55	GO:0004812: aminoacyl-tRNA ligase activity	2.51E-02
56	GO:0004674: protein serine/threonine kinase activity	2.66E-02
57	GO:0008080: N-acetyltransferase activity	2.80E-02
58	GO:0016758: transferase activity, transferring hexosyl groups	2.83E-02
59	GO:0010181: FMN binding	2.95E-02
60	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.25E-02
61	GO:0000156: phosphorelay response regulator activity	3.57E-02
62	GO:0016759: cellulose synthase activity	3.73E-02
63	GO:0008237: metallopeptidase activity	3.89E-02
64	GO:0005515: protein binding	4.36E-02
65	GO:0102483: scopolin beta-glucosidase activity	4.75E-02
66	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0035452: extrinsic component of plastid membrane	0.00E+00
3	GO:0000791: euchromatin	3.24E-04
4	GO:0010370: perinucleolar chromocenter	3.24E-04
5	GO:0009569: chloroplast starch grain	7.07E-04
6	GO:0030870: Mre11 complex	7.07E-04
7	GO:0070652: HAUS complex	1.15E-03
8	GO:0009331: glycerol-3-phosphate dehydrogenase complex	1.65E-03
9	GO:0000178: exosome (RNase complex)	2.82E-03
10	GO:0000795: synaptonemal complex	2.82E-03
11	GO:0009570: chloroplast stroma	4.47E-03
12	GO:0009507: chloroplast	5.69E-03
13	GO:0009707: chloroplast outer membrane	7.35E-03
14	GO:0042644: chloroplast nucleoid	7.48E-03
15	GO:0005720: nuclear heterochromatin	7.48E-03
16	GO:0031977: thylakoid lumen	1.11E-02
17	GO:0016602: CCAAT-binding factor complex	1.25E-02
18	GO:0000419: DNA-directed RNA polymerase V complex	1.60E-02
19	GO:0043234: protein complex	1.60E-02
20	GO:0005874: microtubule	1.88E-02
21	GO:0005654: nucleoplasm	2.83E-02
22	GO:0016592: mediator complex	3.41E-02
23	GO:0000785: chromatin	3.41E-02
24	GO:0071944: cell periphery	3.57E-02
25	GO:0043231: intracellular membrane-bounded organelle	3.61E-02
26	GO:0010319: stromule	3.89E-02
27	GO:0000932: P-body	4.23E-02