co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G23540

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002084: protein depalmitoylation	0.00E+00
2	GO:0036258: multivesicular body assembly	0.00E+00
3	GO:0046680: response to DDT	0.00E+00
4	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
5	GO:0006903: vesicle targeting	0.00E+00
6	GO:0070070: proton-transporting V-type ATPase complex assembly	0.00E+00
7	GO:0006511: ubiquitin-dependent protein catabolic process	3.35E-05
8	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	7.50E-05
9	GO:0042176: regulation of protein catabolic process	7.50E-05
10	GO:0006102: isocitrate metabolic process	1.76E-04
11	GO:0000032: cell wall mannoprotein biosynthetic process	2.09E-04
12	GO:1900384: regulation of flavonol biosynthetic process	2.09E-04
13	GO:1900424: regulation of defense response to bacterium	2.09E-04
14	GO:0035266: meristem growth	2.09E-04
15	GO:0007292: female gamete generation	2.09E-04
16	GO:0010421: hydrogen peroxide-mediated programmed cell death	2.09E-04
17	GO:0015031: protein transport	2.25E-04
18	GO:0046686: response to cadmium ion	3.82E-04
19	GO:0051788: response to misfolded protein	4.66E-04
20	GO:0080026: response to indolebutyric acid	4.66E-04
21	GO:0050688: regulation of defense response to virus	4.66E-04
22	GO:0015709: thiosulfate transport	4.66E-04
23	GO:0071422: succinate transmembrane transport	4.66E-04
24	GO:0009805: coumarin biosynthetic process	4.66E-04
25	GO:0010372: positive regulation of gibberellin biosynthetic process	4.66E-04
26	GO:0006790: sulfur compound metabolic process	4.92E-04
27	GO:0046854: phosphatidylinositol phosphorylation	7.02E-04
28	GO:0009225: nucleotide-sugar metabolic process	7.02E-04
29	GO:0009062: fatty acid catabolic process	7.59E-04
30	GO:0010253: UDP-rhamnose biosynthetic process	7.59E-04
31	GO:0090630: activation of GTPase activity	7.59E-04
32	GO:0006517: protein deglycosylation	7.59E-04
33	GO:0033591: response to L-ascorbic acid	7.59E-04
34	GO:0060968: regulation of gene silencing	7.59E-04
35	GO:0006612: protein targeting to membrane	1.08E-03
36	GO:0006893: Golgi to plasma membrane transport	1.08E-03
37	GO:0002679: respiratory burst involved in defense response	1.08E-03
38	GO:0080024: indolebutyric acid metabolic process	1.08E-03
39	GO:0070676: intralumenal vesicle formation	1.08E-03
40	GO:0009298: GDP-mannose biosynthetic process	1.08E-03
41	GO:0070072: vacuolar proton-transporting V-type ATPase complex assembly	1.08E-03
42	GO:0015729: oxaloacetate transport	1.08E-03
43	GO:0030433: ubiquitin-dependent ERAD pathway	1.13E-03
44	GO:0010222: stem vascular tissue pattern formation	1.44E-03
45	GO:0033320: UDP-D-xylose biosynthetic process	1.44E-03
46	GO:1902584: positive regulation of response to water deprivation	1.44E-03
47	GO:0010363: regulation of plant-type hypersensitive response	1.44E-03
48	GO:0071423: malate transmembrane transport	1.83E-03
49	GO:0009823: cytokinin catabolic process	1.83E-03
50	GO:0098719: sodium ion import across plasma membrane	1.83E-03
51	GO:0006564: L-serine biosynthetic process	1.83E-03
52	GO:0005513: detection of calcium ion	1.83E-03
53	GO:0045927: positive regulation of growth	1.83E-03
54	GO:0010315: auxin efflux	2.26E-03
55	GO:0007035: vacuolar acidification	2.26E-03
56	GO:0035435: phosphate ion transmembrane transport	2.26E-03
57	GO:0048827: phyllome development	2.26E-03
58	GO:0048232: male gamete generation	2.26E-03
59	GO:0006555: methionine metabolic process	2.26E-03
60	GO:0043248: proteasome assembly	2.26E-03
61	GO:0042732: D-xylose metabolic process	2.26E-03
62	GO:0030163: protein catabolic process	2.35E-03
63	GO:0006886: intracellular protein transport	2.43E-03
64	GO:0034389: lipid particle organization	2.71E-03
65	GO:0009612: response to mechanical stimulus	2.71E-03
66	GO:0009554: megasporogenesis	2.71E-03
67	GO:0019509: L-methionine salvage from methylthioadenosine	2.71E-03
68	GO:0008272: sulfate transport	3.20E-03
69	GO:0080186: developmental vegetative growth	3.20E-03
70	GO:0006888: ER to Golgi vesicle-mediated transport	3.50E-03
71	GO:0006402: mRNA catabolic process	3.71E-03
72	GO:0006491: N-glycan processing	3.71E-03
73	GO:0010078: maintenance of root meristem identity	3.71E-03
74	GO:0050821: protein stabilization	3.71E-03
75	GO:0009699: phenylpropanoid biosynthetic process	4.24E-03
76	GO:0006002: fructose 6-phosphate metabolic process	4.24E-03
77	GO:0015996: chlorophyll catabolic process	4.24E-03
78	GO:0060321: acceptance of pollen	4.24E-03
79	GO:0006499: N-terminal protein myristoylation	4.28E-03
80	GO:0010043: response to zinc ion	4.48E-03
81	GO:0046685: response to arsenic-containing substance	4.80E-03
82	GO:0045087: innate immune response	4.91E-03
83	GO:0006099: tricarboxylic acid cycle	5.13E-03
84	GO:0048354: mucilage biosynthetic process involved in seed coat development	5.38E-03
85	GO:0051453: regulation of intracellular pH	5.38E-03
86	GO:0043067: regulation of programmed cell death	5.38E-03
87	GO:0009688: abscisic acid biosynthetic process	5.99E-03
88	GO:0048829: root cap development	5.99E-03
89	GO:0051555: flavonol biosynthetic process	5.99E-03
90	GO:0072593: reactive oxygen species metabolic process	6.62E-03
91	GO:0043085: positive regulation of catalytic activity	6.62E-03
92	GO:0046856: phosphatidylinositol dephosphorylation	6.62E-03
93	GO:0010015: root morphogenesis	6.62E-03
94	GO:0016925: protein sumoylation	7.28E-03
95	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	7.28E-03
96	GO:0055046: microgametogenesis	7.96E-03
97	GO:0009933: meristem structural organization	8.66E-03
98	GO:0034605: cellular response to heat	8.66E-03
99	GO:0051603: proteolysis involved in cellular protein catabolic process	8.83E-03
100	GO:0019853: L-ascorbic acid biosynthetic process	9.37E-03
101	GO:0090351: seedling development	9.37E-03
102	GO:0010053: root epidermal cell differentiation	9.37E-03
103	GO:0007031: peroxisome organization	9.37E-03
104	GO:0034976: response to endoplasmic reticulum stress	1.01E-02
105	GO:0006096: glycolytic process	1.01E-02
106	GO:0045454: cell redox homeostasis	1.09E-02
107	GO:0015992: proton transport	1.25E-02
108	GO:0019915: lipid storage	1.25E-02
109	GO:0009814: defense response, incompatible interaction	1.33E-02
110	GO:0080092: regulation of pollen tube growth	1.33E-02
111	GO:0019748: secondary metabolic process	1.33E-02
112	GO:0010227: floral organ abscission	1.41E-02
113	GO:0009561: megagametogenesis	1.50E-02
114	GO:0042127: regulation of cell proliferation	1.50E-02
115	GO:0009306: protein secretion	1.50E-02
116	GO:0042147: retrograde transport, endosome to Golgi	1.59E-02
117	GO:0015991: ATP hydrolysis coupled proton transport	1.68E-02
118	GO:0006662: glycerol ether metabolic process	1.77E-02
119	GO:0015986: ATP synthesis coupled proton transport	1.86E-02
120	GO:0006814: sodium ion transport	1.86E-02
121	GO:0009646: response to absence of light	1.86E-02
122	GO:0055072: iron ion homeostasis	1.96E-02
123	GO:0009851: auxin biosynthetic process	1.96E-02
124	GO:0010183: pollen tube guidance	1.96E-02
125	GO:0006635: fatty acid beta-oxidation	2.06E-02
126	GO:0031047: gene silencing by RNA	2.15E-02
127	GO:0006914: autophagy	2.36E-02
128	GO:0006470: protein dephosphorylation	2.42E-02
129	GO:0071805: potassium ion transmembrane transport	2.46E-02
130	GO:0006904: vesicle docking involved in exocytosis	2.46E-02
131	GO:0016579: protein deubiquitination	2.57E-02
132	GO:0009816: defense response to bacterium, incompatible interaction	2.78E-02
133	GO:0009817: defense response to fungus, incompatible interaction	3.23E-02
134	GO:0010311: lateral root formation	3.34E-02
135	GO:0048767: root hair elongation	3.34E-02
136	GO:0009407: toxin catabolic process	3.46E-02
137	GO:0009860: pollen tube growth	3.52E-02
138	GO:0007568: aging	3.58E-02
139	GO:0016051: carbohydrate biosynthetic process	3.82E-02
140	GO:0034599: cellular response to oxidative stress	3.94E-02
141	GO:0006839: mitochondrial transport	4.19E-02
142	GO:0016192: vesicle-mediated transport	4.25E-02
143	GO:0006887: exocytosis	4.32E-02
144	GO:0006631: fatty acid metabolic process	4.32E-02
145	GO:0009744: response to sucrose	4.57E-02
146	GO:0009636: response to toxic substance	4.97E-02
147	GO:0009965: leaf morphogenesis	4.97E-02
148	GO:0055114: oxidation-reduction process	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0052861: glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group	0.00E+00
2	GO:0016504: peptidase activator activity	0.00E+00
3	GO:0070577: lysine-acetylated histone binding	0.00E+00
4	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	7.54E-06
5	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.73E-05
6	GO:0004298: threonine-type endopeptidase activity	6.78E-05
7	GO:0036402: proteasome-activating ATPase activity	7.50E-05
8	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.04E-04
9	GO:0043813: phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity	2.09E-04
10	GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	2.09E-04
11	GO:0004476: mannose-6-phosphate isomerase activity	2.09E-04
12	GO:0102293: pheophytinase b activity	2.09E-04
13	GO:0019786: Atg8-specific protease activity	2.09E-04
14	GO:0030234: enzyme regulator activity	3.71E-04
15	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.97E-04
16	GO:0019779: Atg8 activating enzyme activity	4.66E-04
17	GO:0050377: UDP-glucose 4,6-dehydratase activity	4.66E-04
18	GO:0015117: thiosulfate transmembrane transporter activity	4.66E-04
19	GO:1901677: phosphate transmembrane transporter activity	4.66E-04
20	GO:0047746: chlorophyllase activity	4.66E-04
21	GO:0052739: phosphatidylserine 1-acylhydrolase activity	4.66E-04
22	GO:0010297: heteropolysaccharide binding	4.66E-04
23	GO:0008460: dTDP-glucose 4,6-dehydratase activity	4.66E-04
24	GO:0051879: Hsp90 protein binding	4.66E-04
25	GO:0052740: 1-acyl-2-lysophosphatidylserine acylhydrolase activity	4.66E-04
26	GO:0004617: phosphoglycerate dehydrogenase activity	4.66E-04
27	GO:0010280: UDP-L-rhamnose synthase activity	4.66E-04
28	GO:0008805: carbon-monoxide oxygenase activity	4.66E-04
29	GO:0003746: translation elongation factor activity	6.12E-04
30	GO:0017025: TBP-class protein binding	7.02E-04
31	GO:0015141: succinate transmembrane transporter activity	7.59E-04
32	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	7.59E-04
33	GO:0005310: dicarboxylic acid transmembrane transporter activity	7.59E-04
34	GO:0043130: ubiquitin binding	8.63E-04
35	GO:0015131: oxaloacetate transmembrane transporter activity	1.08E-03
36	GO:0004165: dodecenoyl-CoA delta-isomerase activity	1.08E-03
37	GO:0017077: oxidative phosphorylation uncoupler activity	1.08E-03
38	GO:0070628: proteasome binding	1.44E-03
39	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	1.44E-03
40	GO:0004031: aldehyde oxidase activity	1.44E-03
41	GO:0050302: indole-3-acetaldehyde oxidase activity	1.44E-03
42	GO:0019776: Atg8 ligase activity	1.44E-03
43	GO:0047134: protein-disulfide reductase activity	1.45E-03
44	GO:0016887: ATPase activity	1.48E-03
45	GO:0004791: thioredoxin-disulfide reductase activity	1.81E-03
46	GO:0031386: protein tag	1.83E-03
47	GO:0008374: O-acyltransferase activity	1.83E-03
48	GO:0019139: cytokinin dehydrogenase activity	1.83E-03
49	GO:0004518: nuclease activity	2.21E-03
50	GO:0031593: polyubiquitin binding	2.26E-03
51	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	2.26E-03
52	GO:0051117: ATPase binding	2.26E-03
53	GO:0048040: UDP-glucuronate decarboxylase activity	2.26E-03
54	GO:0008474: palmitoyl-(protein) hydrolase activity	2.26E-03
55	GO:0003950: NAD+ ADP-ribosyltransferase activity	2.71E-03
56	GO:0070403: NAD+ binding	2.71E-03
57	GO:0015140: malate transmembrane transporter activity	3.20E-03
58	GO:0008320: protein transmembrane transporter activity	3.20E-03
59	GO:0003872: 6-phosphofructokinase activity	3.20E-03
60	GO:0008375: acetylglucosaminyltransferase activity	3.32E-03
61	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	4.24E-03
62	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.48E-03
63	GO:0030955: potassium ion binding	5.38E-03
64	GO:0004743: pyruvate kinase activity	5.38E-03
65	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	5.99E-03
66	GO:0008047: enzyme activator activity	5.99E-03
67	GO:0015386: potassium:proton antiporter activity	6.62E-03
68	GO:0046961: proton-transporting ATPase activity, rotational mechanism	6.62E-03
69	GO:0015116: sulfate transmembrane transporter activity	7.28E-03
70	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	7.28E-03
71	GO:0051287: NAD binding	7.66E-03
72	GO:0031072: heat shock protein binding	7.96E-03
73	GO:0050660: flavin adenine dinucleotide binding	7.96E-03
74	GO:0008233: peptidase activity	8.50E-03
75	GO:0008131: primary amine oxidase activity	8.66E-03
76	GO:0004190: aspartic-type endopeptidase activity	9.37E-03
77	GO:0004725: protein tyrosine phosphatase activity	1.01E-02
78	GO:0004722: protein serine/threonine phosphatase activity	1.23E-02
79	GO:0008408: 3'-5' exonuclease activity	1.25E-02
80	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	1.25E-02
81	GO:0003756: protein disulfide isomerase activity	1.50E-02
82	GO:0004527: exonuclease activity	1.77E-02
83	GO:0008565: protein transporter activity	1.83E-02
84	GO:0016853: isomerase activity	1.86E-02
85	GO:0004843: thiol-dependent ubiquitin-specific protease activity	2.06E-02
86	GO:0015385: sodium:proton antiporter activity	2.25E-02
87	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.25E-02
88	GO:0003824: catalytic activity	2.53E-02
89	GO:0016597: amino acid binding	2.57E-02
90	GO:0051213: dioxygenase activity	2.67E-02
91	GO:0004721: phosphoprotein phosphatase activity	3.00E-02
92	GO:0000287: magnesium ion binding	3.21E-02
93	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.23E-02
94	GO:0005096: GTPase activator activity	3.34E-02
95	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.82E-02
96	GO:0046872: metal ion binding	4.22E-02
97	GO:0004364: glutathione transferase activity	4.45E-02
98	GO:0035091: phosphatidylinositol binding	4.84E-02
99	GO:0051537: 2 iron, 2 sulfur cluster binding	4.84E-02
100	GO:0005198: structural molecule activity	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
2	GO:0000502: proteasome complex	1.58E-11
3	GO:0005839: proteasome core complex	1.97E-06
4	GO:0005829: cytosol	3.46E-06
5	GO:0031597: cytosolic proteasome complex	1.04E-04
6	GO:0031595: nuclear proteasome complex	1.37E-04
7	GO:0012510: trans-Golgi network transport vesicle membrane	2.09E-04
8	GO:0016442: RISC complex	2.09E-04
9	GO:0008540: proteasome regulatory particle, base subcomplex	3.16E-04
10	GO:0008541: proteasome regulatory particle, lid subcomplex	4.29E-04
11	GO:0030132: clathrin coat of coated pit	7.59E-04
12	GO:0030130: clathrin coat of trans-Golgi network vesicle	7.59E-04
13	GO:0005775: vacuolar lumen	1.08E-03
14	GO:0005776: autophagosome	1.44E-03
15	GO:0016471: vacuolar proton-transporting V-type ATPase complex	1.44E-03
16	GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain	1.83E-03
17	GO:0005945: 6-phosphofructokinase complex	1.83E-03
18	GO:0000813: ESCRT I complex	1.83E-03
19	GO:0030127: COPII vesicle coat	2.26E-03
20	GO:0030904: retromer complex	2.26E-03
21	GO:0005794: Golgi apparatus	2.40E-03
22	GO:0032580: Golgi cisterna membrane	2.50E-03
23	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	3.20E-03
24	GO:0005737: cytoplasm	3.52E-03
25	GO:0000421: autophagosome membrane	3.71E-03
26	GO:0031982: vesicle	3.71E-03
27	GO:0005886: plasma membrane	4.09E-03
28	GO:0005811: lipid particle	4.24E-03
29	GO:0000326: protein storage vacuole	4.24E-03
30	GO:0019773: proteasome core complex, alpha-subunit complex	4.24E-03
31	GO:0031090: organelle membrane	4.80E-03
32	GO:0010494: cytoplasmic stress granule	4.80E-03
33	GO:0005768: endosome	5.38E-03
34	GO:0005783: endoplasmic reticulum	5.40E-03
35	GO:0031902: late endosome membrane	5.84E-03
36	GO:0048471: perinuclear region of cytoplasm	6.62E-03
37	GO:0031307: integral component of mitochondrial outer membrane	7.28E-03
38	GO:0031410: cytoplasmic vesicle	1.33E-02
39	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.50E-02
40	GO:0005802: trans-Golgi network	1.55E-02
41	GO:0000145: exocyst	2.15E-02
42	GO:0005778: peroxisomal membrane	2.46E-02
43	GO:0000932: P-body	2.67E-02
44	GO:0005788: endoplasmic reticulum lumen	2.78E-02
45	GO:0009536: plastid	2.98E-02
46	GO:0000325: plant-type vacuole	3.58E-02
47	GO:0005773: vacuole	4.50E-02
48	GO:0005856: cytoskeleton	4.97E-02