co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G23060

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009661: chromoplast organization	0.00E+00
2	GO:1902171: regulation of tocopherol cyclase activity	0.00E+00
3	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
4	GO:0033494: ferulate metabolic process	0.00E+00
5	GO:0005996: monosaccharide metabolic process	0.00E+00
6	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
7	GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process	0.00E+00
8	GO:0009773: photosynthetic electron transport in photosystem I	1.21E-09
9	GO:0010207: photosystem II assembly	3.59E-07
10	GO:0090391: granum assembly	5.74E-06
11	GO:0006094: gluconeogenesis	1.69E-05
12	GO:0006636: unsaturated fatty acid biosynthetic process	3.03E-05
13	GO:0042549: photosystem II stabilization	5.89E-05
14	GO:0010114: response to red light	6.13E-05
15	GO:0050821: protein stabilization	1.40E-04
16	GO:0006096: glycolytic process	1.43E-04
17	GO:0080051: cutin transport	1.80E-04
18	GO:0080093: regulation of photorespiration	1.80E-04
19	GO:0031998: regulation of fatty acid beta-oxidation	1.80E-04
20	GO:0046467: membrane lipid biosynthetic process	1.80E-04
21	GO:0015671: oxygen transport	1.80E-04
22	GO:0006098: pentose-phosphate shunt	2.13E-04
23	GO:0005982: starch metabolic process	2.55E-04
24	GO:0015979: photosynthesis	2.94E-04
25	GO:0015995: chlorophyll biosynthetic process	3.01E-04
26	GO:1904143: positive regulation of carotenoid biosynthetic process	4.05E-04
27	GO:0080029: cellular response to boron-containing substance levels	4.05E-04
28	GO:0015908: fatty acid transport	4.05E-04
29	GO:0071457: cellular response to ozone	4.05E-04
30	GO:0010143: cutin biosynthetic process	5.13E-04
31	GO:0006631: fatty acid metabolic process	5.83E-04
32	GO:0010025: wax biosynthetic process	6.38E-04
33	GO:0006810: transport	7.25E-04
34	GO:0009768: photosynthesis, light harvesting in photosystem I	7.77E-04
35	GO:0046713: borate transport	9.45E-04
36	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	9.45E-04
37	GO:1902358: sulfate transmembrane transport	9.45E-04
38	GO:0071484: cellular response to light intensity	9.45E-04
39	GO:0010222: stem vascular tissue pattern formation	1.25E-03
40	GO:0071486: cellular response to high light intensity	1.25E-03
41	GO:0009765: photosynthesis, light harvesting	1.25E-03
42	GO:0045727: positive regulation of translation	1.25E-03
43	GO:0015994: chlorophyll metabolic process	1.25E-03
44	GO:0006021: inositol biosynthetic process	1.25E-03
45	GO:0042631: cellular response to water deprivation	1.27E-03
46	GO:0055114: oxidation-reduction process	1.37E-03
47	GO:0019252: starch biosynthetic process	1.57E-03
48	GO:0006097: glyoxylate cycle	1.59E-03
49	GO:0071493: cellular response to UV-B	1.59E-03
50	GO:0016120: carotene biosynthetic process	1.59E-03
51	GO:0006869: lipid transport	1.93E-03
52	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.96E-03
53	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.96E-03
54	GO:1902456: regulation of stomatal opening	1.96E-03
55	GO:0009228: thiamine biosynthetic process	1.96E-03
56	GO:0010190: cytochrome b6f complex assembly	1.96E-03
57	GO:0051607: defense response to virus	2.29E-03
58	GO:0010189: vitamin E biosynthetic process	2.35E-03
59	GO:0009854: oxidative photosynthetic carbon pathway	2.35E-03
60	GO:0006633: fatty acid biosynthetic process	2.57E-03
61	GO:0005975: carbohydrate metabolic process	2.72E-03
62	GO:0009395: phospholipid catabolic process	2.77E-03
63	GO:0010196: nonphotochemical quenching	2.77E-03
64	GO:0008272: sulfate transport	2.77E-03
65	GO:0009769: photosynthesis, light harvesting in photosystem II	2.77E-03
66	GO:1900057: positive regulation of leaf senescence	2.77E-03
67	GO:0009645: response to low light intensity stimulus	2.77E-03
68	GO:0018298: protein-chromophore linkage	3.15E-03
69	GO:0052543: callose deposition in cell wall	3.21E-03
70	GO:0016559: peroxisome fission	3.21E-03
71	GO:0019827: stem cell population maintenance	3.21E-03
72	GO:0008610: lipid biosynthetic process	3.21E-03
73	GO:0009642: response to light intensity	3.21E-03
74	GO:0070413: trehalose metabolism in response to stress	3.21E-03
75	GO:0010218: response to far red light	3.47E-03
76	GO:0032544: plastid translation	3.67E-03
77	GO:2000031: regulation of salicylic acid mediated signaling pathway	3.67E-03
78	GO:0071482: cellular response to light stimulus	3.67E-03
79	GO:0019430: removal of superoxide radicals	3.67E-03
80	GO:0009657: plastid organization	3.67E-03
81	GO:0009637: response to blue light	3.98E-03
82	GO:0019432: triglyceride biosynthetic process	4.15E-03
83	GO:0006783: heme biosynthetic process	4.15E-03
84	GO:0034599: cellular response to oxidative stress	4.16E-03
85	GO:0042742: defense response to bacterium	4.46E-03
86	GO:0006779: porphyrin-containing compound biosynthetic process	4.65E-03
87	GO:0009641: shade avoidance	5.18E-03
88	GO:0006782: protoporphyrinogen IX biosynthetic process	5.18E-03
89	GO:0006535: cysteine biosynthetic process from serine	5.18E-03
90	GO:0009644: response to high light intensity	5.54E-03
91	GO:0018119: peptidyl-cysteine S-nitrosylation	5.72E-03
92	GO:0043085: positive regulation of catalytic activity	5.72E-03
93	GO:0000272: polysaccharide catabolic process	5.72E-03
94	GO:0002213: defense response to insect	6.28E-03
95	GO:0080167: response to karrikin	6.63E-03
96	GO:0006108: malate metabolic process	6.86E-03
97	GO:0006006: glucose metabolic process	6.86E-03
98	GO:0009767: photosynthetic electron transport chain	6.86E-03
99	GO:0010588: cotyledon vascular tissue pattern formation	6.86E-03
100	GO:0006364: rRNA processing	6.90E-03
101	GO:0010223: secondary shoot formation	7.46E-03
102	GO:0009266: response to temperature stimulus	7.46E-03
103	GO:0010020: chloroplast fission	7.46E-03
104	GO:0019253: reductive pentose-phosphate cycle	7.46E-03
105	GO:0009833: plant-type primary cell wall biogenesis	8.71E-03
106	GO:0005992: trehalose biosynthetic process	9.37E-03
107	GO:0019344: cysteine biosynthetic process	9.37E-03
108	GO:0042545: cell wall modification	9.54E-03
109	GO:0009695: jasmonic acid biosynthetic process	1.00E-02
110	GO:0016998: cell wall macromolecule catabolic process	1.07E-02
111	GO:0009269: response to desiccation	1.07E-02
112	GO:0016114: terpenoid biosynthetic process	1.07E-02
113	GO:0019748: secondary metabolic process	1.14E-02
114	GO:0035428: hexose transmembrane transport	1.14E-02
115	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.14E-02
116	GO:0030433: ubiquitin-dependent ERAD pathway	1.14E-02
117	GO:0016117: carotenoid biosynthetic process	1.37E-02
118	GO:0000413: protein peptidyl-prolyl isomerization	1.44E-02
119	GO:0042335: cuticle development	1.44E-02
120	GO:0046323: glucose import	1.52E-02
121	GO:0071472: cellular response to salt stress	1.52E-02
122	GO:0006520: cellular amino acid metabolic process	1.52E-02
123	GO:0006662: glycerol ether metabolic process	1.52E-02
124	GO:0008654: phospholipid biosynthetic process	1.68E-02
125	GO:0045490: pectin catabolic process	1.71E-02
126	GO:0007623: circadian rhythm	1.71E-02
127	GO:0010193: response to ozone	1.77E-02
128	GO:0032502: developmental process	1.85E-02
129	GO:0009630: gravitropism	1.85E-02
130	GO:1901657: glycosyl compound metabolic process	1.94E-02
131	GO:0009735: response to cytokinin	2.01E-02
132	GO:0009416: response to light stimulus	2.25E-02
133	GO:0010027: thylakoid membrane organization	2.30E-02
134	GO:0009611: response to wounding	2.31E-02
135	GO:0042128: nitrate assimilation	2.48E-02
136	GO:0009409: response to cold	2.51E-02
137	GO:0006950: response to stress	2.58E-02
138	GO:0010411: xyloglucan metabolic process	2.58E-02
139	GO:0030244: cellulose biosynthetic process	2.77E-02
140	GO:0000160: phosphorelay signal transduction system	2.87E-02
141	GO:0010311: lateral root formation	2.87E-02
142	GO:0009853: photorespiration	3.28E-02
143	GO:0006099: tricarboxylic acid cycle	3.39E-02
144	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.39E-02
145	GO:0042542: response to hydrogen peroxide	3.82E-02
146	GO:0042546: cell wall biogenesis	4.04E-02
147	GO:0000209: protein polyubiquitination	4.04E-02
148	GO:0006855: drug transmembrane transport	4.39E-02
149	GO:0032259: methylation	4.61E-02
150	GO:0016042: lipid catabolic process	4.68E-02
151	GO:0009736: cytokinin-activated signaling pathway	4.86E-02
152	GO:0010224: response to UV-B	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0008465: glycerate dehydrogenase activity	0.00E+00
2	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
3	GO:0004768: stearoyl-CoA 9-desaturase activity	0.00E+00
4	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
5	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
6	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
7	GO:0046863: ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity	0.00E+00
8	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
9	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
10	GO:0045550: geranylgeranyl reductase activity	0.00E+00
11	GO:0033840: NDP-glucose-starch glucosyltransferase activity	0.00E+00
12	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
13	GO:0009011: starch synthase activity	1.12E-07
14	GO:0004332: fructose-bisphosphate aldolase activity	5.00E-07
15	GO:0004373: glycogen (starch) synthase activity	5.74E-06
16	GO:0004565: beta-galactosidase activity	1.69E-05
17	GO:0015245: fatty acid transporter activity	1.80E-04
18	GO:0005344: oxygen transporter activity	1.80E-04
19	GO:0035671: enone reductase activity	1.80E-04
20	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	1.80E-04
21	GO:0030794: (S)-coclaurine-N-methyltransferase activity	1.80E-04
22	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	1.80E-04
23	GO:0031957: very long-chain fatty acid-CoA ligase activity	1.80E-04
24	GO:0015168: glycerol transmembrane transporter activity	1.80E-04
25	GO:0050017: L-3-cyanoalanine synthase activity	4.05E-04
26	GO:0008883: glutamyl-tRNA reductase activity	4.05E-04
27	GO:0047746: chlorophyllase activity	4.05E-04
28	GO:0042389: omega-3 fatty acid desaturase activity	4.05E-04
29	GO:0010297: heteropolysaccharide binding	4.05E-04
30	GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity	4.05E-04
31	GO:0033201: alpha-1,4-glucan synthase activity	4.05E-04
32	GO:0004512: inositol-3-phosphate synthase activity	4.05E-04
33	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	4.05E-04
34	GO:0019172: glyoxalase III activity	4.05E-04
35	GO:0031409: pigment binding	6.38E-04
36	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	6.61E-04
37	GO:0050734: hydroxycinnamoyltransferase activity	6.61E-04
38	GO:0046715: borate transmembrane transporter activity	9.45E-04
39	GO:0001872: (1->3)-beta-D-glucan binding	9.45E-04
40	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	9.45E-04
41	GO:0015204: urea transmembrane transporter activity	1.25E-03
42	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.25E-03
43	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	1.59E-03
44	GO:0016615: malate dehydrogenase activity	1.96E-03
45	GO:2001070: starch binding	1.96E-03
46	GO:0004784: superoxide dismutase activity	1.96E-03
47	GO:0004462: lactoylglutathione lyase activity	1.96E-03
48	GO:0004124: cysteine synthase activity	2.35E-03
49	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	2.35E-03
50	GO:0102391: decanoate--CoA ligase activity	2.35E-03
51	GO:0030060: L-malate dehydrogenase activity	2.35E-03
52	GO:0016168: chlorophyll binding	2.56E-03
53	GO:0004467: long-chain fatty acid-CoA ligase activity	2.77E-03
54	GO:0005337: nucleoside transmembrane transporter activity	3.21E-03
55	GO:0008271: secondary active sulfate transmembrane transporter activity	3.67E-03
56	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	3.67E-03
57	GO:0008289: lipid binding	3.81E-03
58	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.93E-03
59	GO:0042802: identical protein binding	3.93E-03
60	GO:0050661: NADP binding	4.53E-03
61	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	4.65E-03
62	GO:0016788: hydrolase activity, acting on ester bonds	5.17E-03
63	GO:0030234: enzyme regulator activity	5.18E-03
64	GO:0008047: enzyme activator activity	5.18E-03
65	GO:0051537: 2 iron, 2 sulfur cluster binding	5.54E-03
66	GO:0051287: NAD binding	6.20E-03
67	GO:0015116: sulfate transmembrane transporter activity	6.28E-03
68	GO:0008266: poly(U) RNA binding	7.46E-03
69	GO:0045330: aspartyl esterase activity	7.64E-03
70	GO:0030599: pectinesterase activity	9.25E-03
71	GO:0016760: cellulose synthase (UDP-forming) activity	1.22E-02
72	GO:0022891: substrate-specific transmembrane transporter activity	1.22E-02
73	GO:0003727: single-stranded RNA binding	1.29E-02
74	GO:0047134: protein-disulfide reductase activity	1.37E-02
75	GO:0004791: thioredoxin-disulfide reductase activity	1.60E-02
76	GO:0016853: isomerase activity	1.60E-02
77	GO:0005355: glucose transmembrane transporter activity	1.60E-02
78	GO:0050662: coenzyme binding	1.60E-02
79	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.77E-02
80	GO:0048038: quinone binding	1.77E-02
81	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.94E-02
82	GO:0000156: phosphorelay response regulator activity	1.94E-02
83	GO:0003743: translation initiation factor activity	1.99E-02
84	GO:0016759: cellulose synthase activity	2.03E-02
85	GO:0016791: phosphatase activity	2.03E-02
86	GO:0015250: water channel activity	2.30E-02
87	GO:0016491: oxidoreductase activity	2.41E-02
88	GO:0008168: methyltransferase activity	2.54E-02
89	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.58E-02
90	GO:0102483: scopolin beta-glucosidase activity	2.58E-02
91	GO:0030247: polysaccharide binding	2.58E-02
92	GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding	2.68E-02
93	GO:0016740: transferase activity	2.88E-02
94	GO:0030246: carbohydrate binding	3.26E-02
95	GO:0003993: acid phosphatase activity	3.39E-02
96	GO:0000987: core promoter proximal region sequence-specific DNA binding	3.39E-02
97	GO:0008422: beta-glucosidase activity	3.50E-02
98	GO:0052689: carboxylic ester hydrolase activity	3.62E-02
99	GO:0004185: serine-type carboxypeptidase activity	3.93E-02
100	GO:0043621: protein self-association	4.16E-02
101	GO:0015293: symporter activity	4.27E-02
102	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.39E-02
103	GO:0016787: hydrolase activity	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0042579: microbody	0.00E+00
2	GO:0009507: chloroplast	2.60E-25
3	GO:0009534: chloroplast thylakoid	4.32E-15
4	GO:0009535: chloroplast thylakoid membrane	5.88E-13
5	GO:0009941: chloroplast envelope	2.44E-11
6	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.24E-08
7	GO:0010287: plastoglobule	6.22E-08
8	GO:0009570: chloroplast stroma	1.45E-07
9	GO:0048046: apoplast	1.73E-07
10	GO:0009579: thylakoid	1.08E-06
11	GO:0009543: chloroplast thylakoid lumen	1.70E-06
12	GO:0031969: chloroplast membrane	2.79E-05
13	GO:0009344: nitrite reductase complex [NAD(P)H]	1.80E-04
14	GO:0009515: granal stacked thylakoid	1.80E-04
15	GO:0010319: stromule	2.05E-04
16	GO:0043036: starch grain	4.05E-04
17	GO:0000427: plastid-encoded plastid RNA polymerase complex	4.05E-04
18	GO:0009569: chloroplast starch grain	4.05E-04
19	GO:0030095: chloroplast photosystem II	5.13E-04
20	GO:0005773: vacuole	5.34E-04
21	GO:0030076: light-harvesting complex	5.74E-04
22	GO:0031977: thylakoid lumen	5.83E-04
23	GO:0009897: external side of plasma membrane	6.61E-04
24	GO:0009654: photosystem II oxygen evolving complex	7.77E-04
25	GO:0009517: PSII associated light-harvesting complex II	1.25E-03
26	GO:0009522: photosystem I	1.47E-03
27	GO:0009523: photosystem II	1.57E-03
28	GO:0019898: extrinsic component of membrane	1.57E-03
29	GO:0005777: peroxisome	1.65E-03
30	GO:0005618: cell wall	2.16E-03
31	GO:0009501: amyloplast	3.21E-03
32	GO:0008180: COP9 signalosome	4.15E-03
33	GO:0009505: plant-type cell wall	6.61E-03
34	GO:0043234: protein complex	8.71E-03
35	GO:0042651: thylakoid membrane	1.00E-02
36	GO:0019005: SCF ubiquitin ligase complex	2.77E-02
37	GO:0009707: chloroplast outer membrane	2.77E-02
38	GO:0000502: proteasome complex	4.86E-02