Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G22340

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006907: pinocytosis0.00E+00
2GO:0070125: mitochondrial translational elongation0.00E+00
3GO:0061157: mRNA destabilization0.00E+00
4GO:0019323: pentose catabolic process0.00E+00
5GO:0090071: negative regulation of ribosome biogenesis0.00E+00
6GO:0017038: protein import0.00E+00
7GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
8GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement0.00E+00
9GO:0007638: mechanosensory behavior0.00E+00
10GO:0080127: fruit septum development0.00E+00
11GO:0009733: response to auxin8.50E-08
12GO:0009734: auxin-activated signaling pathway1.36E-07
13GO:0040008: regulation of growth3.84E-06
14GO:0046620: regulation of organ growth7.67E-05
15GO:0015995: chlorophyll biosynthetic process1.21E-04
16GO:0048829: root cap development2.27E-04
17GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.76E-04
18GO:0005983: starch catabolic process3.38E-04
19GO:0016123: xanthophyll biosynthetic process4.11E-04
20GO:0016554: cytidine to uridine editing5.71E-04
21GO:0010027: thylakoid membrane organization6.29E-04
22GO:0030488: tRNA methylation7.54E-04
23GO:0042759: long-chain fatty acid biosynthetic process7.66E-04
24GO:1902458: positive regulation of stomatal opening7.66E-04
25GO:0015904: tetracycline transport7.66E-04
26GO:0000025: maltose catabolic process7.66E-04
27GO:0070509: calcium ion import7.66E-04
28GO:0044262: cellular carbohydrate metabolic process7.66E-04
29GO:0006438: valyl-tRNA aminoacylation7.66E-04
30GO:0046520: sphingoid biosynthetic process7.66E-04
31GO:0010480: microsporocyte differentiation7.66E-04
32GO:0010444: guard mother cell differentiation9.62E-04
33GO:1900033: negative regulation of trichome patterning1.65E-03
34GO:0001736: establishment of planar polarity1.65E-03
35GO:0009786: regulation of asymmetric cell division1.65E-03
36GO:0031648: protein destabilization1.65E-03
37GO:0001682: tRNA 5'-leader removal1.65E-03
38GO:1903426: regulation of reactive oxygen species biosynthetic process1.65E-03
39GO:2000123: positive regulation of stomatal complex development1.65E-03
40GO:0010024: phytochromobilin biosynthetic process1.65E-03
41GO:0010275: NAD(P)H dehydrogenase complex assembly1.65E-03
42GO:1901529: positive regulation of anion channel activity1.65E-03
43GO:0048255: mRNA stabilization1.65E-03
44GO:0061062: regulation of nematode larval development1.65E-03
45GO:0018026: peptidyl-lysine monomethylation1.65E-03
46GO:0010182: sugar mediated signaling pathway1.75E-03
47GO:0009958: positive gravitropism1.75E-03
48GO:0048507: meristem development1.75E-03
49GO:0009926: auxin polar transport2.01E-03
50GO:0006779: porphyrin-containing compound biosynthetic process2.07E-03
51GO:1900865: chloroplast RNA modification2.07E-03
52GO:0009641: shade avoidance2.43E-03
53GO:0006949: syncytium formation2.43E-03
54GO:0006782: protoporphyrinogen IX biosynthetic process2.43E-03
55GO:0010583: response to cyclopentenone2.51E-03
56GO:0006696: ergosterol biosynthetic process2.74E-03
57GO:0045910: negative regulation of DNA recombination2.74E-03
58GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement2.74E-03
59GO:0033591: response to L-ascorbic acid2.74E-03
60GO:1902448: positive regulation of shade avoidance2.74E-03
61GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process2.74E-03
62GO:0080055: low-affinity nitrate transport2.74E-03
63GO:0051604: protein maturation2.74E-03
64GO:0009828: plant-type cell wall loosening2.95E-03
65GO:0045037: protein import into chloroplast stroma3.23E-03
66GO:0009725: response to hormone3.68E-03
67GO:0010588: cotyledon vascular tissue pattern formation3.68E-03
68GO:2000012: regulation of auxin polar transport3.68E-03
69GO:1990019: protein storage vacuole organization3.98E-03
70GO:0010088: phloem development3.98E-03
71GO:0051513: regulation of monopolar cell growth3.98E-03
72GO:0007231: osmosensory signaling pathway3.98E-03
73GO:0009102: biotin biosynthetic process3.98E-03
74GO:0051639: actin filament network formation3.98E-03
75GO:0010239: chloroplast mRNA processing3.98E-03
76GO:0009052: pentose-phosphate shunt, non-oxidative branch3.98E-03
77GO:0009647: skotomorphogenesis3.98E-03
78GO:0007276: gamete generation3.98E-03
79GO:0046739: transport of virus in multicellular host3.98E-03
80GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity3.98E-03
81GO:0010207: photosystem II assembly4.16E-03
82GO:0070588: calcium ion transmembrane transport4.67E-03
83GO:0045892: negative regulation of transcription, DNA-templated4.71E-03
84GO:0010025: wax biosynthetic process5.21E-03
85GO:0048629: trichome patterning5.38E-03
86GO:0010109: regulation of photosynthesis5.38E-03
87GO:0051764: actin crosslink formation5.38E-03
88GO:0009765: photosynthesis, light harvesting5.38E-03
89GO:0033500: carbohydrate homeostasis5.38E-03
90GO:2000038: regulation of stomatal complex development5.38E-03
91GO:0009624: response to nematode5.49E-03
92GO:0071555: cell wall organization5.76E-03
93GO:0051017: actin filament bundle assembly5.79E-03
94GO:0006865: amino acid transport6.67E-03
95GO:0045038: protein import into chloroplast thylakoid membrane6.93E-03
96GO:0048497: maintenance of floral organ identity6.93E-03
97GO:0045487: gibberellin catabolic process6.93E-03
98GO:0009107: lipoate biosynthetic process6.93E-03
99GO:0007094: mitotic spindle assembly checkpoint6.93E-03
100GO:0000304: response to singlet oxygen6.93E-03
101GO:0080110: sporopollenin biosynthetic process6.93E-03
102GO:0010375: stomatal complex patterning6.93E-03
103GO:0016120: carotene biosynthetic process6.93E-03
104GO:0003333: amino acid transmembrane transport7.04E-03
105GO:0009831: plant-type cell wall modification involved in multidimensional cell growth8.43E-03
106GO:0018258: protein O-linked glycosylation via hydroxyproline8.61E-03
107GO:0010405: arabinogalactan protein metabolic process8.61E-03
108GO:0009913: epidermal cell differentiation8.61E-03
109GO:1902456: regulation of stomatal opening8.61E-03
110GO:0042793: transcription from plastid promoter8.61E-03
111GO:0033365: protein localization to organelle8.61E-03
112GO:0003006: developmental process involved in reproduction8.61E-03
113GO:0006631: fatty acid metabolic process8.83E-03
114GO:0042127: regulation of cell proliferation9.19E-03
115GO:0009640: photomorphogenesis9.81E-03
116GO:0009744: response to sucrose9.81E-03
117GO:2000033: regulation of seed dormancy process1.04E-02
118GO:1901259: chloroplast rRNA processing1.04E-02
119GO:0010019: chloroplast-nucleus signaling pathway1.04E-02
120GO:0042372: phylloquinone biosynthetic process1.04E-02
121GO:0017148: negative regulation of translation1.04E-02
122GO:0008033: tRNA processing1.08E-02
123GO:0010305: leaf vascular tissue pattern formation1.17E-02
124GO:0030307: positive regulation of cell growth1.24E-02
125GO:0000082: G1/S transition of mitotic cell cycle1.24E-02
126GO:0015693: magnesium ion transport1.24E-02
127GO:0048528: post-embryonic root development1.24E-02
128GO:1900056: negative regulation of leaf senescence1.24E-02
129GO:0048437: floral organ development1.24E-02
130GO:0048544: recognition of pollen1.25E-02
131GO:0009664: plant-type cell wall organization1.31E-02
132GO:0009451: RNA modification1.31E-02
133GO:0006468: protein phosphorylation1.34E-02
134GO:0006353: DNA-templated transcription, termination1.44E-02
135GO:2000070: regulation of response to water deprivation1.44E-02
136GO:0010492: maintenance of shoot apical meristem identity1.44E-02
137GO:0000105: histidine biosynthetic process1.44E-02
138GO:0009231: riboflavin biosynthetic process1.44E-02
139GO:0001522: pseudouridine synthesis1.44E-02
140GO:0071554: cell wall organization or biogenesis1.44E-02
141GO:0006605: protein targeting1.44E-02
142GO:0032502: developmental process1.54E-02
143GO:0006351: transcription, DNA-templated1.66E-02
144GO:0015996: chlorophyll catabolic process1.66E-02
145GO:0007186: G-protein coupled receptor signaling pathway1.66E-02
146GO:0010497: plasmodesmata-mediated intercellular transport1.66E-02
147GO:0009657: plastid organization1.66E-02
148GO:0006526: arginine biosynthetic process1.66E-02
149GO:0048316: seed development1.86E-02
150GO:0000373: Group II intron splicing1.89E-02
151GO:0000902: cell morphogenesis1.89E-02
152GO:0009835: fruit ripening1.89E-02
153GO:0051865: protein autoubiquitination1.89E-02
154GO:0016042: lipid catabolic process1.98E-02
155GO:0009416: response to light stimulus2.10E-02
156GO:0009793: embryo development ending in seed dormancy2.13E-02
157GO:0005982: starch metabolic process2.13E-02
158GO:0009638: phototropism2.13E-02
159GO:0042761: very long-chain fatty acid biosynthetic process2.13E-02
160GO:0009098: leucine biosynthetic process2.13E-02
161GO:0007346: regulation of mitotic cell cycle2.13E-02
162GO:0009826: unidimensional cell growth2.31E-02
163GO:0006298: mismatch repair2.38E-02
164GO:0009299: mRNA transcription2.38E-02
165GO:0010162: seed dormancy process2.38E-02
166GO:0009742: brassinosteroid mediated signaling pathway2.43E-02
167GO:0009750: response to fructose2.64E-02
168GO:0006415: translational termination2.64E-02
169GO:0018119: peptidyl-cysteine S-nitrosylation2.64E-02
170GO:0048229: gametophyte development2.64E-02
171GO:0048765: root hair cell differentiation2.64E-02
172GO:0006816: calcium ion transport2.64E-02
173GO:0009073: aromatic amino acid family biosynthetic process2.64E-02
174GO:0008285: negative regulation of cell proliferation2.64E-02
175GO:0010311: lateral root formation2.88E-02
176GO:0000160: phosphorelay signal transduction system2.88E-02
177GO:0010582: floral meristem determinacy2.90E-02
178GO:0012501: programmed cell death2.90E-02
179GO:0007275: multicellular organism development3.03E-02
180GO:0006006: glucose metabolic process3.18E-02
181GO:0009691: cytokinin biosynthetic process3.18E-02
182GO:0050826: response to freezing3.18E-02
183GO:0010075: regulation of meristem growth3.18E-02
184GO:0030048: actin filament-based movement3.18E-02
185GO:0010628: positive regulation of gene expression3.18E-02
186GO:0010102: lateral root morphogenesis3.18E-02
187GO:0009785: blue light signaling pathway3.18E-02
188GO:0009887: animal organ morphogenesis3.47E-02
189GO:0009934: regulation of meristem structural organization3.47E-02
190GO:0048467: gynoecium development3.47E-02
191GO:0010020: chloroplast fission3.47E-02
192GO:0045087: innate immune response3.48E-02
193GO:0005975: carbohydrate metabolic process3.61E-02
194GO:0090351: seedling development3.76E-02
195GO:0006833: water transport4.06E-02
196GO:0000162: tryptophan biosynthetic process4.06E-02
197GO:0009735: response to cytokinin4.65E-02
198GO:0019953: sexual reproduction4.69E-02
199GO:0006418: tRNA aminoacylation for protein translation4.69E-02
RankGO TermAdjusted P value
1GO:0047661: amino-acid racemase activity0.00E+00
2GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
3GO:0016636: oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor0.00E+00
4GO:0047793: cycloeucalenol cycloisomerase activity0.00E+00
5GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
6GO:0004076: biotin synthase activity0.00E+00
7GO:0050619: phytochromobilin:ferredoxin oxidoreductase activity0.00E+00
8GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
9GO:0071633: dihydroceramidase activity0.00E+00
10GO:0019203: carbohydrate phosphatase activity0.00E+00
11GO:0045435: lycopene epsilon cyclase activity0.00E+00
12GO:0001872: (1->3)-beta-D-glucan binding1.64E-04
13GO:0004832: valine-tRNA ligase activity7.66E-04
14GO:0052381: tRNA dimethylallyltransferase activity7.66E-04
15GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity7.66E-04
16GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity7.66E-04
17GO:0000170: sphingosine hydroxylase activity7.66E-04
18GO:0050139: nicotinate-N-glucosyltransferase activity7.66E-04
19GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity7.66E-04
20GO:0047259: glucomannan 4-beta-mannosyltransferase activity7.66E-04
21GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity7.66E-04
22GO:0005227: calcium activated cation channel activity7.66E-04
23GO:0004134: 4-alpha-glucanotransferase activity7.66E-04
24GO:0009374: biotin binding7.66E-04
25GO:0050308: sugar-phosphatase activity7.66E-04
26GO:0008835: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity7.66E-04
27GO:0017118: lipoyltransferase activity1.65E-03
28GO:0003852: 2-isopropylmalate synthase activity1.65E-03
29GO:0045543: gibberellin 2-beta-dioxygenase activity1.65E-03
30GO:0043425: bHLH transcription factor binding1.65E-03
31GO:0016415: octanoyltransferase activity1.65E-03
32GO:0004750: ribulose-phosphate 3-epimerase activity1.65E-03
33GO:0016630: protochlorophyllide reductase activity1.65E-03
34GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity1.65E-03
35GO:0008805: carbon-monoxide oxygenase activity1.65E-03
36GO:0042284: sphingolipid delta-4 desaturase activity1.65E-03
37GO:0008493: tetracycline transporter activity1.65E-03
38GO:0008138: protein tyrosine/serine/threonine phosphatase activity1.75E-03
39GO:0043621: protein self-association2.27E-03
40GO:0004519: endonuclease activity2.65E-03
41GO:0016805: dipeptidase activity2.74E-03
42GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor2.74E-03
43GO:0080054: low-affinity nitrate transmembrane transporter activity2.74E-03
44GO:0015462: ATPase-coupled protein transmembrane transporter activity2.74E-03
45GO:0004180: carboxypeptidase activity2.74E-03
46GO:0070330: aromatase activity2.74E-03
47GO:0005504: fatty acid binding2.74E-03
48GO:0003913: DNA photolyase activity2.74E-03
49GO:0005262: calcium channel activity3.68E-03
50GO:0016851: magnesium chelatase activity3.98E-03
51GO:0043023: ribosomal large subunit binding3.98E-03
52GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity3.98E-03
53GO:0016149: translation release factor activity, codon specific3.98E-03
54GO:0008266: poly(U) RNA binding4.16E-03
55GO:0030247: polysaccharide binding4.57E-03
56GO:0016279: protein-lysine N-methyltransferase activity5.38E-03
57GO:0010011: auxin binding5.38E-03
58GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed5.38E-03
59GO:0045430: chalcone isomerase activity5.38E-03
60GO:0010328: auxin influx transmembrane transporter activity5.38E-03
61GO:0019199: transmembrane receptor protein kinase activity5.38E-03
62GO:0005528: FK506 binding5.79E-03
63GO:0003989: acetyl-CoA carboxylase activity6.93E-03
64GO:0008725: DNA-3-methyladenine glycosylase activity6.93E-03
65GO:0018685: alkane 1-monooxygenase activity6.93E-03
66GO:0003723: RNA binding7.33E-03
67GO:0009055: electron carrier activity7.93E-03
68GO:2001070: starch binding8.61E-03
69GO:0030983: mismatched DNA binding8.61E-03
70GO:1990714: hydroxyproline O-galactosyltransferase activity8.61E-03
71GO:0004526: ribonuclease P activity8.61E-03
72GO:0004709: MAP kinase kinase kinase activity8.61E-03
73GO:0016208: AMP binding8.61E-03
74GO:0005515: protein binding8.78E-03
75GO:0003727: single-stranded RNA binding9.19E-03
76GO:0051920: peroxiredoxin activity1.04E-02
77GO:0051753: mannan synthase activity1.04E-02
78GO:0016832: aldehyde-lyase activity1.04E-02
79GO:0004674: protein serine/threonine kinase activity1.09E-02
80GO:0001085: RNA polymerase II transcription factor binding1.17E-02
81GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.20E-02
82GO:0009881: photoreceptor activity1.24E-02
83GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.39E-02
84GO:0030674: protein binding, bridging1.44E-02
85GO:0016209: antioxidant activity1.44E-02
86GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity1.44E-02
87GO:0042803: protein homodimerization activity1.57E-02
88GO:0004871: signal transducer activity1.57E-02
89GO:0015171: amino acid transmembrane transporter activity1.64E-02
90GO:0051015: actin filament binding1.65E-02
91GO:0000156: phosphorelay response regulator activity1.65E-02
92GO:0008173: RNA methyltransferase activity1.66E-02
93GO:0003747: translation release factor activity1.89E-02
94GO:0016413: O-acetyltransferase activity1.98E-02
95GO:0004650: polygalacturonase activity2.01E-02
96GO:0016301: kinase activity2.29E-02
97GO:0046983: protein dimerization activity2.73E-02
98GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding3.17E-02
99GO:0015095: magnesium ion transmembrane transporter activity3.18E-02
100GO:0031072: heat shock protein binding3.18E-02
101GO:0009982: pseudouridine synthase activity3.18E-02
102GO:0003725: double-stranded RNA binding3.18E-02
103GO:0004565: beta-galactosidase activity3.18E-02
104GO:0015266: protein channel activity3.18E-02
105GO:0004672: protein kinase activity3.36E-02
106GO:0003774: motor activity3.47E-02
107GO:0042973: glucan endo-1,3-beta-D-glucosidase activity3.47E-02
108GO:0003746: translation elongation factor activity3.48E-02
109GO:0003697: single-stranded DNA binding3.48E-02
110GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding3.51E-02
111GO:0005524: ATP binding3.75E-02
112GO:0004190: aspartic-type endopeptidase activity3.76E-02
113GO:0003712: transcription cofactor activity3.76E-02
114GO:0008146: sulfotransferase activity3.76E-02
115GO:0052689: carboxylic ester hydrolase activity3.87E-02
116GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.08E-02
117GO:0051536: iron-sulfur cluster binding4.37E-02
118GO:0043424: protein histidine kinase binding4.69E-02
119GO:0035091: phosphatidylinositol binding4.83E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast1.14E-11
2GO:0009941: chloroplast envelope4.18E-08
3GO:0009570: chloroplast stroma2.52E-07
4GO:0009534: chloroplast thylakoid2.65E-07
5GO:0009986: cell surface9.62E-04
6GO:0046658: anchored component of plasma membrane1.52E-03
7GO:0000427: plastid-encoded plastid RNA polymerase complex1.65E-03
8GO:0009317: acetyl-CoA carboxylase complex2.74E-03
9GO:0009528: plastid inner membrane2.74E-03
10GO:0019897: extrinsic component of plasma membrane2.74E-03
11GO:0010007: magnesium chelatase complex2.74E-03
12GO:0030139: endocytic vesicle2.74E-03
13GO:0010319: stromule3.19E-03
14GO:0009508: plastid chromosome3.68E-03
15GO:0032585: multivesicular body membrane3.98E-03
16GO:0032432: actin filament bundle3.98E-03
17GO:0005886: plasma membrane5.09E-03
18GO:0005828: kinetochore microtubule5.38E-03
19GO:0009527: plastid outer membrane5.38E-03
20GO:0009526: plastid envelope5.38E-03
21GO:0055035: plastid thylakoid membrane6.93E-03
22GO:0000776: kinetochore6.93E-03
23GO:0009532: plastid stroma7.04E-03
24GO:0009543: chloroplast thylakoid lumen7.74E-03
25GO:0031225: anchored component of membrane7.79E-03
26GO:0015629: actin cytoskeleton8.43E-03
27GO:0000793: condensed chromosome8.61E-03
28GO:0010369: chromocenter1.04E-02
29GO:0000777: condensed chromosome kinetochore1.04E-02
30GO:0031969: chloroplast membrane1.06E-02
31GO:0000794: condensed nuclear chromosome1.24E-02
32GO:0009533: chloroplast stromal thylakoid1.24E-02
33GO:0009501: amyloplast1.44E-02
34GO:0009295: nucleoid1.87E-02
35GO:0009535: chloroplast thylakoid membrane1.96E-02
36GO:0030529: intracellular ribonucleoprotein complex2.10E-02
37GO:0005876: spindle microtubule2.13E-02
38GO:0005667: transcription factor complex2.35E-02
39GO:0000418: DNA-directed RNA polymerase IV complex2.38E-02
40GO:0016459: myosin complex2.38E-02
41GO:0005884: actin filament2.64E-02
42GO:0090404: pollen tube tip2.64E-02
43GO:0009579: thylakoid2.93E-02
44GO:0005578: proteinaceous extracellular matrix3.18E-02
45GO:0005874: microtubule3.19E-02
46GO:0030095: chloroplast photosystem II3.47E-02
47GO:0043234: protein complex4.06E-02
48GO:0031977: thylakoid lumen4.13E-02
49GO:0009654: photosystem II oxygen evolving complex4.69E-02
50GO:0042651: thylakoid membrane4.69E-02
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Gene type



Gene DE type