co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G19940

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
2	GO:0015979: photosynthesis	1.57E-11
3	GO:0010196: nonphotochemical quenching	3.74E-07
4	GO:0030388: fructose 1,6-bisphosphate metabolic process	5.67E-07
5	GO:0090391: granum assembly	2.15E-06
6	GO:0006000: fructose metabolic process	2.15E-06
7	GO:0005983: starch catabolic process	3.78E-06
8	GO:0015995: chlorophyll biosynthetic process	3.94E-06
9	GO:0006094: gluconeogenesis	4.78E-06
10	GO:0006002: fructose 6-phosphate metabolic process	7.69E-05
11	GO:0010206: photosystem II repair	9.49E-05
12	GO:0000023: maltose metabolic process	1.04E-04
13	GO:0000025: maltose catabolic process	1.04E-04
14	GO:0010205: photoinhibition	1.15E-04
15	GO:0006633: fatty acid biosynthetic process	1.18E-04
16	GO:0009773: photosynthetic electron transport in photosystem I	1.61E-04
17	GO:0005986: sucrose biosynthetic process	2.14E-04
18	GO:0005976: polysaccharide metabolic process	2.44E-04
19	GO:0010353: response to trehalose	2.44E-04
20	GO:0010114: response to red light	2.45E-04
21	GO:0009735: response to cytokinin	2.85E-04
22	GO:0006636: unsaturated fatty acid biosynthetic process	3.06E-04
23	GO:0009768: photosynthesis, light harvesting in photosystem I	3.76E-04
24	GO:0006518: peptide metabolic process	4.05E-04
25	GO:0006081: cellular aldehyde metabolic process	4.05E-04
26	GO:0071484: cellular response to light intensity	5.82E-04
27	GO:0006021: inositol biosynthetic process	7.73E-04
28	GO:0010117: photoprotection	9.77E-04
29	GO:0035434: copper ion transmembrane transport	9.77E-04
30	GO:0016123: xanthophyll biosynthetic process	9.77E-04
31	GO:0010027: thylakoid membrane organization	1.16E-03
32	GO:0010189: vitamin E biosynthetic process	1.43E-03
33	GO:0016311: dephosphorylation	1.43E-03
34	GO:0018298: protein-chromophore linkage	1.51E-03
35	GO:0010218: response to far red light	1.66E-03
36	GO:0008272: sulfate transport	1.67E-03
37	GO:0009610: response to symbiotic fungus	1.67E-03
38	GO:0009631: cold acclimation	1.73E-03
39	GO:0009637: response to blue light	1.90E-03
40	GO:0030091: protein repair	1.93E-03
41	GO:0019827: stem cell population maintenance	1.93E-03
42	GO:0071482: cellular response to light stimulus	2.21E-03
43	GO:0009245: lipid A biosynthetic process	2.49E-03
44	GO:0080167: response to karrikin	2.55E-03
45	GO:0009688: abscisic acid biosynthetic process	3.10E-03
46	GO:0055114: oxidation-reduction process	3.21E-03
47	GO:0072593: reactive oxygen species metabolic process	3.42E-03
48	GO:0009750: response to fructose	3.42E-03
49	GO:0032259: methylation	3.95E-03
50	GO:0009725: response to hormone	4.09E-03
51	GO:0019253: reductive pentose-phosphate cycle	4.44E-03
52	GO:0010207: photosystem II assembly	4.44E-03
53	GO:0009266: response to temperature stimulus	4.44E-03
54	GO:0010143: cutin biosynthetic process	4.44E-03
55	GO:0005985: sucrose metabolic process	4.80E-03
56	GO:0006979: response to oxidative stress	5.16E-03
57	GO:0010025: wax biosynthetic process	5.18E-03
58	GO:0006825: copper ion transport	5.95E-03
59	GO:0061077: chaperone-mediated protein folding	6.35E-03
60	GO:0019748: secondary metabolic process	6.76E-03
61	GO:0010017: red or far-red light signaling pathway	6.76E-03
62	GO:0070417: cellular response to cold	8.05E-03
63	GO:0042335: cuticle development	8.49E-03
64	GO:0010118: stomatal movement	8.49E-03
65	GO:0006606: protein import into nucleus	8.49E-03
66	GO:0010182: sugar mediated signaling pathway	8.95E-03
67	GO:0006810: transport	9.12E-03
68	GO:0019252: starch biosynthetic process	9.90E-03
69	GO:0008654: phospholipid biosynthetic process	9.90E-03
70	GO:0055072: iron ion homeostasis	9.90E-03
71	GO:0048235: pollen sperm cell differentiation	1.09E-02
72	GO:0009658: chloroplast organization	1.24E-02
73	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.40E-02
74	GO:0009627: systemic acquired resistance	1.45E-02
75	GO:0010311: lateral root formation	1.68E-02
76	GO:0000160: phosphorelay signal transduction system	1.68E-02
77	GO:0045454: cell redox homeostasis	1.85E-02
78	GO:0006869: lipid transport	2.02E-02
79	GO:0009414: response to water deprivation	2.05E-02
80	GO:0006631: fatty acid metabolic process	2.17E-02
81	GO:0016042: lipid catabolic process	2.21E-02
82	GO:0009744: response to sucrose	2.30E-02
83	GO:0051707: response to other organism	2.30E-02
84	GO:0009644: response to high light intensity	2.43E-02
85	GO:0006812: cation transport	2.70E-02
86	GO:0009585: red, far-red light phototransduction	2.84E-02
87	GO:0009736: cytokinin-activated signaling pathway	2.84E-02
88	GO:0006096: glycolytic process	3.20E-02
89	GO:0043086: negative regulation of catalytic activity	3.20E-02
90	GO:0009624: response to nematode	3.66E-02
91	GO:0009416: response to light stimulus	4.03E-02

Rank	GO Term	Adjusted P value
1	GO:0033840: NDP-glucose-starch glucosyltransferase activity	0.00E+00
2	GO:0045550: geranylgeranyl reductase activity	0.00E+00
3	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
4	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
5	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
6	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
7	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	5.67E-07
8	GO:0045485: omega-6 fatty acid desaturase activity	1.04E-04
9	GO:0031957: very long-chain fatty acid-CoA ligase activity	1.04E-04
10	GO:0004134: 4-alpha-glucanotransferase activity	1.04E-04
11	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	1.04E-04
12	GO:0030794: (S)-coclaurine-N-methyltransferase activity	1.04E-04
13	GO:0050521: alpha-glucan, water dikinase activity	1.04E-04
14	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	1.04E-04
15	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	1.15E-04
16	GO:0004512: inositol-3-phosphate synthase activity	2.44E-04
17	GO:0018708: thiol S-methyltransferase activity	2.44E-04
18	GO:0016630: protochlorophyllide reductase activity	2.44E-04
19	GO:0042389: omega-3 fatty acid desaturase activity	2.44E-04
20	GO:0010297: heteropolysaccharide binding	2.44E-04
21	GO:0008509: anion transmembrane transporter activity	2.44E-04
22	GO:0031409: pigment binding	3.06E-04
23	GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity	4.05E-04
24	GO:0004373: glycogen (starch) synthase activity	4.05E-04
25	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	5.82E-04
26	GO:0016851: magnesium chelatase activity	5.82E-04
27	GO:0009011: starch synthase activity	7.73E-04
28	GO:0004029: aldehyde dehydrogenase (NAD) activity	1.19E-03
29	GO:0031177: phosphopantetheine binding	1.19E-03
30	GO:0008200: ion channel inhibitor activity	1.19E-03
31	GO:2001070: starch binding	1.19E-03
32	GO:0004332: fructose-bisphosphate aldolase activity	1.19E-03
33	GO:0016168: chlorophyll binding	1.23E-03
34	GO:0000035: acyl binding	1.43E-03
35	GO:0004602: glutathione peroxidase activity	1.43E-03
36	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.43E-03
37	GO:0102391: decanoate--CoA ligase activity	1.43E-03
38	GO:0004467: long-chain fatty acid-CoA ligase activity	1.67E-03
39	GO:0015140: malate transmembrane transporter activity	1.67E-03
40	GO:0008168: methyltransferase activity	1.85E-03
41	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	1.93E-03
42	GO:0005375: copper ion transmembrane transporter activity	2.21E-03
43	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.21E-03
44	GO:0071949: FAD binding	2.49E-03
45	GO:0051537: 2 iron, 2 sulfur cluster binding	2.63E-03
46	GO:0044183: protein binding involved in protein folding	3.42E-03
47	GO:0015386: potassium:proton antiporter activity	3.42E-03
48	GO:0031072: heat shock protein binding	4.09E-03
49	GO:0004565: beta-galactosidase activity	4.09E-03
50	GO:0003954: NADH dehydrogenase activity	5.56E-03
51	GO:0005528: FK506 binding	5.56E-03
52	GO:0015079: potassium ion transmembrane transporter activity	5.95E-03
53	GO:0003756: protein disulfide isomerase activity	7.61E-03
54	GO:0004872: receptor activity	9.90E-03
55	GO:0048038: quinone binding	1.04E-02
56	GO:0000156: phosphorelay response regulator activity	1.14E-02
57	GO:0046872: metal ion binding	1.24E-02
58	GO:0016788: hydrolase activity, acting on ester bonds	1.26E-02
59	GO:0052689: carboxylic ester hydrolase activity	1.70E-02
60	GO:0004222: metalloendopeptidase activity	1.74E-02
61	GO:0030145: manganese ion binding	1.80E-02
62	GO:0003993: acid phosphatase activity	1.98E-02
63	GO:0004185: serine-type carboxypeptidase activity	2.30E-02
64	GO:0009055: electron carrier activity	2.44E-02
65	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.57E-02
66	GO:0016491: oxidoreductase activity	2.98E-02
67	GO:0008289: lipid binding	3.17E-02
68	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.28E-02
69	GO:0016874: ligase activity	3.50E-02
70	GO:0051082: unfolded protein binding	3.66E-02
71	GO:0015035: protein disulfide oxidoreductase activity	3.73E-02
72	GO:0016829: lyase activity	4.54E-02
73	GO:0008565: protein transporter activity	4.87E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0009535: chloroplast thylakoid membrane	4.34E-24
3	GO:0009534: chloroplast thylakoid	5.04E-24
4	GO:0009507: chloroplast	7.54E-20
5	GO:0009941: chloroplast envelope	2.54E-14
6	GO:0009579: thylakoid	4.10E-08
7	GO:0010287: plastoglobule	1.41E-07
8	GO:0009570: chloroplast stroma	1.83E-05
9	GO:0009533: chloroplast stromal thylakoid	4.66E-05
10	GO:0031969: chloroplast membrane	4.68E-05
11	GO:0009538: photosystem I reaction center	6.06E-05
12	GO:0009783: photosystem II antenna complex	1.04E-04
13	GO:0031357: integral component of chloroplast inner membrane	2.44E-04
14	GO:0031304: intrinsic component of mitochondrial inner membrane	2.44E-04
15	GO:0009569: chloroplast starch grain	2.44E-04
16	GO:0010007: magnesium chelatase complex	4.05E-04
17	GO:0009706: chloroplast inner membrane	5.72E-04
18	GO:0009522: photosystem I	7.18E-04
19	GO:0009523: photosystem II	7.69E-04
20	GO:0009517: PSII associated light-harvesting complex II	7.73E-04
21	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.49E-03
22	GO:0030095: chloroplast photosystem II	4.44E-03
23	GO:0030076: light-harvesting complex	4.80E-03
24	GO:0009543: chloroplast thylakoid lumen	5.80E-03
25	GO:0042651: thylakoid membrane	5.95E-03
26	GO:0016020: membrane	7.06E-03
27	GO:0010319: stromule	1.24E-02
28	GO:0016021: integral component of membrane	1.60E-02
29	GO:0009707: chloroplast outer membrane	1.62E-02
30	GO:0031977: thylakoid lumen	2.17E-02
31	GO:0048046: apoplast	3.52E-02
32	GO:0012505: endomembrane system	3.58E-02