Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G19930

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006005: L-fucose biosynthetic process0.00E+00
2GO:0098755: maintenance of seed dormancy by absisic acid0.00E+00
3GO:0050691: regulation of defense response to virus by host9.14E-05
4GO:0042350: GDP-L-fucose biosynthetic process9.14E-05
5GO:1990641: response to iron ion starvation9.14E-05
6GO:0099132: ATP hydrolysis coupled cation transmembrane transport9.14E-05
7GO:0002237: response to molecule of bacterial origin2.02E-04
8GO:0006101: citrate metabolic process2.16E-04
9GO:0080183: response to photooxidative stress2.16E-04
10GO:0080151: positive regulation of salicylic acid mediated signaling pathway2.16E-04
11GO:0042351: 'de novo' GDP-L-fucose biosynthetic process3.61E-04
12GO:0006065: UDP-glucuronate biosynthetic process3.61E-04
13GO:0052546: cell wall pectin metabolic process3.61E-04
14GO:0055089: fatty acid homeostasis5.20E-04
15GO:0009960: endosperm development5.66E-04
16GO:0030041: actin filament polymerization8.73E-04
17GO:0006097: glyoxylate cycle8.73E-04
18GO:0006354: DNA-templated transcription, elongation1.07E-03
19GO:0048317: seed morphogenesis1.07E-03
20GO:0045926: negative regulation of growth1.27E-03
21GO:0071470: cellular response to osmotic stress1.27E-03
22GO:0015031: protein transport1.31E-03
23GO:2000014: regulation of endosperm development1.49E-03
24GO:0045010: actin nucleation1.72E-03
25GO:0031540: regulation of anthocyanin biosynthetic process1.72E-03
26GO:0006102: isocitrate metabolic process1.72E-03
27GO:0010928: regulation of auxin mediated signaling pathway1.72E-03
28GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline1.72E-03
29GO:0000209: protein polyubiquitination2.13E-03
30GO:0010200: response to chitin2.13E-03
31GO:0010112: regulation of systemic acquired resistance2.21E-03
32GO:0006379: mRNA cleavage2.21E-03
33GO:0007338: single fertilization2.21E-03
34GO:0008202: steroid metabolic process2.48E-03
35GO:0019684: photosynthesis, light reaction3.03E-03
36GO:2000028: regulation of photoperiodism, flowering3.63E-03
37GO:0018107: peptidyl-threonine phosphorylation3.63E-03
38GO:0046688: response to copper ion4.26E-03
39GO:0070588: calcium ion transmembrane transport4.26E-03
40GO:0006636: unsaturated fatty acid biosynthetic process4.58E-03
41GO:0080147: root hair cell development4.92E-03
42GO:0006289: nucleotide-excision repair4.92E-03
43GO:0006825: copper ion transport5.27E-03
44GO:0006334: nucleosome assembly5.62E-03
45GO:0009814: defense response, incompatible interaction5.98E-03
46GO:0030433: ubiquitin-dependent ERAD pathway5.98E-03
47GO:0071456: cellular response to hypoxia5.98E-03
48GO:0009306: protein secretion6.73E-03
49GO:0008380: RNA splicing8.00E-03
50GO:0006623: protein targeting to vacuole8.74E-03
51GO:0071554: cell wall organization or biogenesis9.16E-03
52GO:0009567: double fertilization forming a zygote and endosperm1.05E-02
53GO:0071805: potassium ion transmembrane transport1.09E-02
54GO:0009788: negative regulation of abscisic acid-activated signaling pathway1.23E-02
55GO:0010029: regulation of seed germination1.23E-02
56GO:0006906: vesicle fusion1.28E-02
57GO:0016192: vesicle-mediated transport1.36E-02
58GO:0000724: double-strand break repair via homologous recombination1.64E-02
59GO:0045087: innate immune response1.69E-02
60GO:0006099: tricarboxylic acid cycle1.75E-02
61GO:0009751: response to salicylic acid1.88E-02
62GO:0006887: exocytosis1.91E-02
63GO:0006897: endocytosis1.91E-02
64GO:0042542: response to hydrogen peroxide1.97E-02
65GO:0051707: response to other organism2.03E-02
66GO:0000165: MAPK cascade2.32E-02
67GO:0031347: regulation of defense response2.32E-02
68GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process2.32E-02
69GO:0006813: potassium ion transport2.51E-02
70GO:0046686: response to cadmium ion2.94E-02
71GO:0009738: abscisic acid-activated signaling pathway3.27E-02
72GO:0018105: peptidyl-serine phosphorylation3.29E-02
73GO:0006396: RNA processing3.29E-02
74GO:0000398: mRNA splicing, via spliceosome3.57E-02
75GO:0035556: intracellular signal transduction3.57E-02
76GO:0009845: seed germination4.00E-02
77GO:0009737: response to abscisic acid4.33E-02
78GO:0006633: fatty acid biosynthetic process4.45E-02
79GO:0010150: leaf senescence4.75E-02
RankGO TermAdjusted P value
1GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor0.00E+00
2GO:0005212: structural constituent of eye lens0.00E+00
3GO:0050577: GDP-L-fucose synthase activity9.14E-05
4GO:0003994: aconitate hydratase activity2.16E-04
5GO:0032934: sterol binding2.16E-04
6GO:0003979: UDP-glucose 6-dehydrogenase activity3.61E-04
7GO:0016531: copper chaperone activity3.61E-04
8GO:0035529: NADH pyrophosphatase activity5.20E-04
9GO:0045300: acyl-[acyl-carrier-protein] desaturase activity8.73E-04
10GO:0047631: ADP-ribose diphosphatase activity8.73E-04
11GO:0000210: NAD+ diphosphatase activity1.07E-03
12GO:0004656: procollagen-proline 4-dioxygenase activity1.27E-03
13GO:0004708: MAP kinase kinase activity1.72E-03
14GO:0004869: cysteine-type endopeptidase inhibitor activity1.72E-03
15GO:0008142: oxysterol binding1.96E-03
16GO:0051287: NAD binding2.47E-03
17GO:0030234: enzyme regulator activity2.75E-03
18GO:0046872: metal ion binding3.13E-03
19GO:0005388: calcium-transporting ATPase activity3.63E-03
20GO:0031418: L-ascorbic acid binding4.92E-03
21GO:0015079: potassium ion transmembrane transporter activity5.27E-03
22GO:0050662: coenzyme binding8.32E-03
23GO:0016853: isomerase activity8.32E-03
24GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity1.09E-02
25GO:0003682: chromatin binding1.10E-02
26GO:0016413: O-acetyltransferase activity1.14E-02
27GO:0008375: acetylglucosaminyltransferase activity1.28E-02
28GO:0004806: triglyceride lipase activity1.33E-02
29GO:0061630: ubiquitin protein ligase activity1.36E-02
30GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.43E-02
31GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors1.69E-02
32GO:0000149: SNARE binding1.80E-02
33GO:0004712: protein serine/threonine/tyrosine kinase activity1.80E-02
34GO:0051539: 4 iron, 4 sulfur cluster binding1.86E-02
35GO:0005484: SNAP receptor activity2.03E-02
36GO:0051537: 2 iron, 2 sulfur cluster binding2.14E-02
37GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.51E-02
38GO:0004842: ubiquitin-protein transferase activity2.54E-02
39GO:0031625: ubiquitin protein ligase binding2.70E-02
40GO:0016874: ligase activity3.09E-02
41GO:0003779: actin binding3.16E-02
42GO:0003676: nucleic acid binding3.25E-02
43GO:0015035: protein disulfide oxidoreductase activity3.29E-02
44GO:0008270: zinc ion binding4.13E-02
45GO:0008565: protein transporter activity4.30E-02
46GO:0016787: hydrolase activity4.36E-02
47GO:0003700: transcription factor activity, sequence-specific DNA binding4.55E-02
RankGO TermAdjusted P value
1GO:0009898: cytoplasmic side of plasma membrane6.90E-04
2GO:0000813: ESCRT I complex8.73E-04
3GO:0031463: Cul3-RING ubiquitin ligase complex1.07E-03
4GO:0030665: clathrin-coated vesicle membrane2.48E-03
5GO:0005783: endoplasmic reticulum2.75E-03
6GO:0017119: Golgi transport complex2.75E-03
7GO:0016021: integral component of membrane3.60E-03
8GO:0005758: mitochondrial intermembrane space4.92E-03
9GO:0031902: late endosome membrane1.91E-02
10GO:0031201: SNARE complex1.91E-02
11GO:0005794: Golgi apparatus2.06E-02
12GO:0005887: integral component of plasma membrane2.59E-02
13GO:0005681: spliceosomal complex2.82E-02
14GO:0005789: endoplasmic reticulum membrane2.87E-02
15GO:0016607: nuclear speck2.89E-02
16GO:0010008: endosome membrane2.89E-02
17GO:0009543: chloroplast thylakoid lumen3.78E-02
18GO:0009524: phragmoplast3.93E-02
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Gene type



Gene DE type