co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G19740

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0044154: histone H3-K14 acetylation	0.00E+00
2	GO:0009583: detection of light stimulus	0.00E+00
3	GO:1901698: response to nitrogen compound	0.00E+00
4	GO:0071000: response to magnetism	0.00E+00
5	GO:0046460: neutral lipid biosynthetic process	0.00E+00
6	GO:0031116: positive regulation of microtubule polymerization	0.00E+00
7	GO:0000372: Group I intron splicing	0.00E+00
8	GO:0043972: histone H3-K23 acetylation	0.00E+00
9	GO:0033528: S-methylmethionine cycle	0.00E+00
10	GO:0051322: anaphase	4.33E-05
11	GO:0051171: regulation of nitrogen compound metabolic process	2.51E-04
12	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	2.51E-04
13	GO:0043971: histone H3-K18 acetylation	2.51E-04
14	GO:0048657: anther wall tapetum cell differentiation	2.51E-04
15	GO:0000012: single strand break repair	2.51E-04
16	GO:0042547: cell wall modification involved in multidimensional cell growth	2.51E-04
17	GO:0072387: flavin adenine dinucleotide metabolic process	2.51E-04
18	GO:0006436: tryptophanyl-tRNA aminoacylation	2.51E-04
19	GO:0000066: mitochondrial ornithine transport	2.51E-04
20	GO:0000373: Group II intron splicing	3.46E-04
21	GO:1901529: positive regulation of anion channel activity	5.53E-04
22	GO:0006435: threonyl-tRNA aminoacylation	5.53E-04
23	GO:0080005: photosystem stoichiometry adjustment	5.53E-04
24	GO:0010617: circadian regulation of calcium ion oscillation	5.53E-04
25	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	5.53E-04
26	GO:0099402: plant organ development	5.53E-04
27	GO:0010343: singlet oxygen-mediated programmed cell death	5.53E-04
28	GO:0009793: embryo development ending in seed dormancy	6.31E-04
29	GO:0010207: photosystem II assembly	8.08E-04
30	GO:1902448: positive regulation of shade avoidance	8.99E-04
31	GO:0006013: mannose metabolic process	8.99E-04
32	GO:1901672: positive regulation of systemic acquired resistance	8.99E-04
33	GO:0071705: nitrogen compound transport	8.99E-04
34	GO:0001578: microtubule bundle formation	8.99E-04
35	GO:0045493: xylan catabolic process	8.99E-04
36	GO:0009800: cinnamic acid biosynthetic process	1.28E-03
37	GO:0010306: rhamnogalacturonan II biosynthetic process	1.28E-03
38	GO:0010255: glucose mediated signaling pathway	1.28E-03
39	GO:1901332: negative regulation of lateral root development	1.28E-03
40	GO:0006508: proteolysis	1.31E-03
41	GO:0071249: cellular response to nitrate	1.71E-03
42	GO:0006552: leucine catabolic process	1.71E-03
43	GO:0007020: microtubule nucleation	1.71E-03
44	GO:0015846: polyamine transport	1.71E-03
45	GO:1902347: response to strigolactone	1.71E-03
46	GO:0051781: positive regulation of cell division	1.71E-03
47	GO:0048868: pollen tube development	2.18E-03
48	GO:0046323: glucose import	2.18E-03
49	GO:0010268: brassinosteroid homeostasis	2.18E-03
50	GO:0006465: signal peptide processing	2.19E-03
51	GO:0046785: microtubule polymerization	2.19E-03
52	GO:0010117: photoprotection	2.19E-03
53	GO:0046283: anthocyanin-containing compound metabolic process	2.19E-03
54	GO:0031365: N-terminal protein amino acid modification	2.19E-03
55	GO:0009646: response to absence of light	2.34E-03
56	GO:0016132: brassinosteroid biosynthetic process	2.68E-03
57	GO:1901371: regulation of leaf morphogenesis	2.70E-03
58	GO:0006559: L-phenylalanine catabolic process	2.70E-03
59	GO:0060918: auxin transport	2.70E-03
60	GO:0046777: protein autophosphorylation	2.92E-03
61	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	3.24E-03
62	GO:0034389: lipid particle organization	3.24E-03
63	GO:0010310: regulation of hydrogen peroxide metabolic process	3.24E-03
64	GO:0016125: sterol metabolic process	3.24E-03
65	GO:0000910: cytokinesis	3.65E-03
66	GO:0022904: respiratory electron transport chain	3.82E-03
67	GO:0051510: regulation of unidimensional cell growth	3.82E-03
68	GO:0009610: response to symbiotic fungus	3.82E-03
69	GO:0048528: post-embryonic root development	3.82E-03
70	GO:0006353: DNA-templated transcription, termination	4.44E-03
71	GO:0009704: de-etiolation	4.44E-03
72	GO:0045010: actin nucleation	4.44E-03
73	GO:0048564: photosystem I assembly	4.44E-03
74	GO:0009827: plant-type cell wall modification	5.08E-03
75	GO:0044030: regulation of DNA methylation	5.08E-03
76	GO:0006002: fructose 6-phosphate metabolic process	5.08E-03
77	GO:0022900: electron transport chain	5.08E-03
78	GO:0009451: RNA modification	5.46E-03
79	GO:0019432: triglyceride biosynthetic process	5.75E-03
80	GO:0009821: alkaloid biosynthetic process	5.75E-03
81	GO:0090305: nucleic acid phosphodiester bond hydrolysis	5.75E-03
82	GO:0009086: methionine biosynthetic process	6.46E-03
83	GO:0010380: regulation of chlorophyll biosynthetic process	6.46E-03
84	GO:0008202: steroid metabolic process	6.46E-03
85	GO:1900426: positive regulation of defense response to bacterium	6.46E-03
86	GO:0009638: phototropism	6.46E-03
87	GO:0006535: cysteine biosynthetic process from serine	7.20E-03
88	GO:0006259: DNA metabolic process	7.20E-03
89	GO:0006415: translational termination	7.96E-03
90	GO:0006265: DNA topological change	7.96E-03
91	GO:0009750: response to fructose	7.96E-03
92	GO:0045037: protein import into chloroplast stroma	8.75E-03
93	GO:0015706: nitrate transport	8.75E-03
94	GO:0009785: blue light signaling pathway	9.57E-03
95	GO:0030036: actin cytoskeleton organization	9.57E-03
96	GO:0010075: regulation of meristem growth	9.57E-03
97	GO:0009767: photosynthetic electron transport chain	9.57E-03
98	GO:0006302: double-strand break repair	1.04E-02
99	GO:0080188: RNA-directed DNA methylation	1.13E-02
100	GO:0010167: response to nitrate	1.13E-02
101	GO:0090351: seedling development	1.13E-02
102	GO:0009416: response to light stimulus	1.14E-02
103	GO:0051603: proteolysis involved in cellular protein catabolic process	1.15E-02
104	GO:0006071: glycerol metabolic process	1.22E-02
105	GO:0080167: response to karrikin	1.22E-02
106	GO:0006417: regulation of translation	1.23E-02
107	GO:0010187: negative regulation of seed germination	1.31E-02
108	GO:0006289: nucleotide-excision repair	1.31E-02
109	GO:2000377: regulation of reactive oxygen species metabolic process	1.31E-02
110	GO:0019344: cysteine biosynthetic process	1.31E-02
111	GO:0006418: tRNA aminoacylation for protein translation	1.41E-02
112	GO:0043622: cortical microtubule organization	1.41E-02
113	GO:0006825: copper ion transport	1.41E-02
114	GO:0009740: gibberellic acid mediated signaling pathway	1.50E-02
115	GO:0015992: proton transport	1.50E-02
116	GO:0009814: defense response, incompatible interaction	1.60E-02
117	GO:0035428: hexose transmembrane transport	1.60E-02
118	GO:0016226: iron-sulfur cluster assembly	1.60E-02
119	GO:0006730: one-carbon metabolic process	1.60E-02
120	GO:0080092: regulation of pollen tube growth	1.60E-02
121	GO:0010584: pollen exine formation	1.81E-02
122	GO:0010118: stomatal movement	2.02E-02
123	GO:0045489: pectin biosynthetic process	2.14E-02
124	GO:0007018: microtubule-based movement	2.25E-02
125	GO:0042752: regulation of circadian rhythm	2.25E-02
126	GO:0007059: chromosome segregation	2.25E-02
127	GO:0009790: embryo development	2.33E-02
128	GO:0009749: response to glucose	2.36E-02
129	GO:0006633: fatty acid biosynthetic process	2.50E-02
130	GO:0007264: small GTPase mediated signal transduction	2.60E-02
131	GO:0010090: trichome morphogenesis	2.72E-02
132	GO:0007623: circadian rhythm	2.75E-02
133	GO:0009739: response to gibberellin	3.08E-02
134	GO:0009911: positive regulation of flower development	3.23E-02
135	GO:0016126: sterol biosynthetic process	3.23E-02
136	GO:0010468: regulation of gene expression	3.28E-02
137	GO:0010411: xyloglucan metabolic process	3.62E-02
138	GO:0048481: plant ovule development	3.90E-02
139	GO:0030244: cellulose biosynthetic process	3.90E-02
140	GO:0018298: protein-chromophore linkage	3.90E-02
141	GO:0010311: lateral root formation	4.04E-02
142	GO:0009834: plant-type secondary cell wall biogenesis	4.18E-02
143	GO:0006811: ion transport	4.18E-02
144	GO:0010218: response to far red light	4.18E-02
145	GO:0009658: chloroplast organization	4.24E-02
146	GO:0048527: lateral root development	4.32E-02
147	GO:0007568: aging	4.32E-02
148	GO:0009910: negative regulation of flower development	4.32E-02
149	GO:0009860: pollen tube growth	4.56E-02
150	GO:0009637: response to blue light	4.61E-02
151	GO:0009853: photorespiration	4.61E-02

Rank	GO Term	Adjusted P value
1	GO:0004561: alpha-N-acetylglucosaminidase activity	0.00E+00
2	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
3	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
4	GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity	0.00E+00
5	GO:0019808: polyamine binding	0.00E+00
6	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
7	GO:0048039: ubiquinone binding	0.00E+00
8	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
9	GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity	0.00E+00
10	GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity	0.00E+00
11	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	2.51E-04
12	GO:0005290: L-histidine transmembrane transporter activity	2.51E-04
13	GO:0004008: copper-exporting ATPase activity	2.51E-04
14	GO:0004830: tryptophan-tRNA ligase activity	2.51E-04
15	GO:0000064: L-ornithine transmembrane transporter activity	5.53E-04
16	GO:0004829: threonine-tRNA ligase activity	5.53E-04
17	GO:0050017: L-3-cyanoalanine synthase activity	5.53E-04
18	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	5.53E-04
19	GO:0008898: S-adenosylmethionine-homocysteine S-methyltransferase activity	5.53E-04
20	GO:0004047: aminomethyltransferase activity	5.53E-04
21	GO:0004222: metalloendopeptidase activity	7.14E-04
22	GO:0045548: phenylalanine ammonia-lyase activity	8.99E-04
23	GO:0032549: ribonucleoside binding	8.99E-04
24	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	8.99E-04
25	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	8.99E-04
26	GO:0000254: C-4 methylsterol oxidase activity	1.28E-03
27	GO:0005354: galactose transmembrane transporter activity	1.28E-03
28	GO:0015181: arginine transmembrane transporter activity	1.28E-03
29	GO:0009678: hydrogen-translocating pyrophosphatase activity	1.28E-03
30	GO:0009882: blue light photoreceptor activity	1.28E-03
31	GO:0015189: L-lysine transmembrane transporter activity	1.28E-03
32	GO:0010385: double-stranded methylated DNA binding	1.71E-03
33	GO:0070628: proteasome binding	1.71E-03
34	GO:0009044: xylan 1,4-beta-xylosidase activity	1.71E-03
35	GO:0046556: alpha-L-arabinofuranosidase activity	1.71E-03
36	GO:0005471: ATP:ADP antiporter activity	2.19E-03
37	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	2.19E-03
38	GO:0005355: glucose transmembrane transporter activity	2.34E-03
39	GO:0031593: polyubiquitin binding	2.70E-03
40	GO:0009927: histidine phosphotransfer kinase activity	3.24E-03
41	GO:0004144: diacylglycerol O-acyltransferase activity	3.24E-03
42	GO:0004656: procollagen-proline 4-dioxygenase activity	3.24E-03
43	GO:0004559: alpha-mannosidase activity	3.24E-03
44	GO:0004124: cysteine synthase activity	3.24E-03
45	GO:0004427: inorganic diphosphatase activity	3.82E-03
46	GO:0003872: 6-phosphofructokinase activity	3.82E-03
47	GO:0008235: metalloexopeptidase activity	3.82E-03
48	GO:0005375: copper ion transmembrane transporter activity	5.08E-03
49	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	5.08E-03
50	GO:0008142: oxysterol binding	5.08E-03
51	GO:0008017: microtubule binding	5.62E-03
52	GO:0071949: FAD binding	5.75E-03
53	GO:0003747: translation release factor activity	5.75E-03
54	GO:0016844: strictosidine synthase activity	6.46E-03
55	GO:0015020: glucuronosyltransferase activity	7.20E-03
56	GO:0046872: metal ion binding	7.28E-03
57	GO:0005089: Rho guanyl-nucleotide exchange factor activity	7.96E-03
58	GO:0001054: RNA polymerase I activity	7.96E-03
59	GO:0004177: aminopeptidase activity	7.96E-03
60	GO:0004185: serine-type carboxypeptidase activity	8.24E-03
61	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	9.57E-03
62	GO:0005506: iron ion binding	9.99E-03
63	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.22E-02
64	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.22E-02
65	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.22E-02
66	GO:0031418: L-ascorbic acid binding	1.31E-02
67	GO:0043130: ubiquitin binding	1.31E-02
68	GO:0003723: RNA binding	1.39E-02
69	GO:0004176: ATP-dependent peptidase activity	1.50E-02
70	GO:0030570: pectate lyase activity	1.71E-02
71	GO:0030246: carbohydrate binding	1.78E-02
72	GO:0004812: aminoacyl-tRNA ligase activity	1.92E-02
73	GO:0004672: protein kinase activity	1.99E-02
74	GO:0004402: histone acetyltransferase activity	2.02E-02
75	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.05E-02
76	GO:0001085: RNA polymerase II transcription factor binding	2.14E-02
77	GO:0004527: exonuclease activity	2.14E-02
78	GO:0008536: Ran GTPase binding	2.14E-02
79	GO:0004519: endonuclease activity	2.22E-02
80	GO:0010181: FMN binding	2.25E-02
81	GO:0019901: protein kinase binding	2.36E-02
82	GO:0015144: carbohydrate transmembrane transporter activity	2.38E-02
83	GO:0048038: quinone binding	2.48E-02
84	GO:0004518: nuclease activity	2.60E-02
85	GO:0005351: sugar:proton symporter activity	2.69E-02
86	GO:0003684: damaged DNA binding	2.85E-02
87	GO:0008237: metallopeptidase activity	2.97E-02
88	GO:0016413: O-acetyltransferase activity	3.10E-02
89	GO:0004806: triglyceride lipase activity	3.62E-02
90	GO:0004721: phosphoprotein phosphatase activity	3.62E-02
91	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	4.32E-02
92	GO:0003682: chromatin binding	4.48E-02
93	GO:0003697: single-stranded DNA binding	4.61E-02

Rank	GO Term	Adjusted P value
1	GO:0042597: periplasmic space	0.00E+00
2	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
3	GO:0009507: chloroplast	2.26E-08
4	GO:0009574: preprophase band	7.18E-04
5	GO:0016605: PML body	8.99E-04
6	GO:0009505: plant-type cell wall	1.46E-03
7	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	1.71E-03
8	GO:0072686: mitotic spindle	2.19E-03
9	GO:0005945: 6-phosphofructokinase complex	2.19E-03
10	GO:0031209: SCAR complex	2.70E-03
11	GO:0010005: cortical microtubule, transverse to long axis	3.24E-03
12	GO:0030529: intracellular ribonucleoprotein complex	3.87E-03
13	GO:0031305: integral component of mitochondrial inner membrane	4.44E-03
14	GO:0005811: lipid particle	5.08E-03
15	GO:0005736: DNA-directed RNA polymerase I complex	5.75E-03
16	GO:0016604: nuclear body	6.46E-03
17	GO:0005802: trans-Golgi network	6.83E-03
18	GO:0005740: mitochondrial envelope	7.20E-03
19	GO:0016324: apical plasma membrane	7.20E-03
20	GO:0055028: cortical microtubule	7.20E-03
21	GO:0005768: endosome	8.55E-03
22	GO:0005938: cell cortex	9.57E-03
23	GO:0016602: CCAAT-binding factor complex	9.57E-03
24	GO:0005578: proteinaceous extracellular matrix	9.57E-03
25	GO:0005874: microtubule	1.16E-02
26	GO:0009536: plastid	1.46E-02
27	GO:0009535: chloroplast thylakoid membrane	1.48E-02
28	GO:0009532: plastid stroma	1.50E-02
29	GO:0009706: chloroplast inner membrane	1.59E-02
30	GO:0005871: kinesin complex	1.92E-02
31	GO:0009524: phragmoplast	2.10E-02
32	GO:0009941: chloroplast envelope	2.49E-02
33	GO:0009295: nucleoid	2.97E-02
34	GO:0005667: transcription factor complex	3.49E-02
35	GO:0009506: plasmodesma	4.81E-02
36	GO:0009570: chloroplast stroma	4.84E-02
37	GO:0005819: spindle	4.90E-02