co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G19290

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0061157: mRNA destabilization	0.00E+00
2	GO:0002184: cytoplasmic translational termination	0.00E+00
3	GO:0006849: plasma membrane pyruvate transport	0.00E+00
4	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
5	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
6	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
7	GO:0042407: cristae formation	0.00E+00
8	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
9	GO:0017038: protein import	0.00E+00
10	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
11	GO:0005983: starch catabolic process	6.24E-07
12	GO:2000012: regulation of auxin polar transport	8.51E-07
13	GO:0022622: root system development	4.54E-05
14	GO:0015995: chlorophyll biosynthetic process	5.20E-05
15	GO:0009734: auxin-activated signaling pathway	1.06E-04
16	GO:0032880: regulation of protein localization	1.90E-04
17	GO:0005991: trehalose metabolic process	2.57E-04
18	GO:0006747: FAD biosynthetic process	2.57E-04
19	GO:0000023: maltose metabolic process	2.57E-04
20	GO:0000025: maltose catabolic process	2.57E-04
21	GO:0005980: glycogen catabolic process	2.57E-04
22	GO:0030198: extracellular matrix organization	2.57E-04
23	GO:0010480: microsporocyte differentiation	2.57E-04
24	GO:0042759: long-chain fatty acid biosynthetic process	2.57E-04
25	GO:0042371: vitamin K biosynthetic process	2.57E-04
26	GO:0043007: maintenance of rDNA	2.57E-04
27	GO:0015904: tetracycline transport	2.57E-04
28	GO:0009733: response to auxin	3.64E-04
29	GO:0009658: chloroplast organization	4.03E-04
30	GO:0009638: phototropism	4.27E-04
31	GO:0010275: NAD(P)H dehydrogenase complex assembly	5.68E-04
32	GO:0006423: cysteinyl-tRNA aminoacylation	5.68E-04
33	GO:0009629: response to gravity	5.68E-04
34	GO:0019388: galactose catabolic process	5.68E-04
35	GO:0007154: cell communication	5.68E-04
36	GO:0071497: cellular response to freezing	5.68E-04
37	GO:0090342: regulation of cell aging	5.68E-04
38	GO:2000123: positive regulation of stomatal complex development	5.68E-04
39	GO:0009773: photosynthetic electron transport in photosystem I	5.76E-04
40	GO:0010628: positive regulation of gene expression	7.47E-04
41	GO:0006006: glucose metabolic process	7.47E-04
42	GO:0010020: chloroplast fission	8.40E-04
43	GO:0006633: fatty acid biosynthetic process	9.06E-04
44	GO:1902448: positive regulation of shade avoidance	9.22E-04
45	GO:0040008: regulation of growth	9.73E-04
46	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.32E-03
47	GO:0010731: protein glutathionylation	1.32E-03
48	GO:0046739: transport of virus in multicellular host	1.32E-03
49	GO:0009590: detection of gravity	1.32E-03
50	GO:0043572: plastid fission	1.32E-03
51	GO:0061077: chaperone-mediated protein folding	1.39E-03
52	GO:0009765: photosynthesis, light harvesting	1.76E-03
53	GO:2000038: regulation of stomatal complex development	1.76E-03
54	GO:1901141: regulation of lignin biosynthetic process	1.76E-03
55	GO:0010109: regulation of photosynthesis	1.76E-03
56	GO:0008284: positive regulation of cell proliferation	1.95E-03
57	GO:0010375: stomatal complex patterning	2.25E-03
58	GO:0016120: carotene biosynthetic process	2.25E-03
59	GO:0010236: plastoquinone biosynthetic process	2.25E-03
60	GO:0048497: maintenance of floral organ identity	2.25E-03
61	GO:0016123: xanthophyll biosynthetic process	2.25E-03
62	GO:0009958: positive gravitropism	2.26E-03
63	GO:0010197: polar nucleus fusion	2.26E-03
64	GO:0005975: carbohydrate metabolic process	2.44E-03
65	GO:0019252: starch biosynthetic process	2.61E-03
66	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.77E-03
67	GO:0009959: negative gravitropism	2.77E-03
68	GO:0000470: maturation of LSU-rRNA	2.77E-03
69	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.77E-03
70	GO:0009913: epidermal cell differentiation	2.77E-03
71	GO:0000741: karyogamy	2.77E-03
72	GO:0010405: arabinogalactan protein metabolic process	2.77E-03
73	GO:0042026: protein refolding	3.33E-03
74	GO:0042372: phylloquinone biosynthetic process	3.33E-03
75	GO:0006458: 'de novo' protein folding	3.33E-03
76	GO:0030488: tRNA methylation	3.33E-03
77	GO:0080086: stamen filament development	3.33E-03
78	GO:0010310: regulation of hydrogen peroxide metabolic process	3.33E-03
79	GO:0009772: photosynthetic electron transport in photosystem II	3.93E-03
80	GO:0048437: floral organ development	3.93E-03
81	GO:0010098: suspensor development	3.93E-03
82	GO:0010444: guard mother cell differentiation	3.93E-03
83	GO:0030307: positive regulation of cell growth	3.93E-03
84	GO:0010161: red light signaling pathway	3.93E-03
85	GO:0005978: glycogen biosynthetic process	4.56E-03
86	GO:0046620: regulation of organ growth	4.56E-03
87	GO:0070413: trehalose metabolism in response to stress	4.56E-03
88	GO:0006605: protein targeting	4.56E-03
89	GO:0009231: riboflavin biosynthetic process	4.56E-03
90	GO:0016042: lipid catabolic process	4.85E-03
91	GO:0010099: regulation of photomorphogenesis	5.22E-03
92	GO:0010497: plasmodesmata-mediated intercellular transport	5.22E-03
93	GO:0010100: negative regulation of photomorphogenesis	5.22E-03
94	GO:0006526: arginine biosynthetic process	5.22E-03
95	GO:0032544: plastid translation	5.22E-03
96	GO:0009817: defense response to fungus, incompatible interaction	5.25E-03
97	GO:0009813: flavonoid biosynthetic process	5.52E-03
98	GO:0010206: photosystem II repair	5.92E-03
99	GO:0046916: cellular transition metal ion homeostasis	5.92E-03
100	GO:0006783: heme biosynthetic process	5.92E-03
101	GO:0048527: lateral root development	6.07E-03
102	GO:0043067: regulation of programmed cell death	6.64E-03
103	GO:0006779: porphyrin-containing compound biosynthetic process	6.64E-03
104	GO:0010629: negative regulation of gene expression	7.40E-03
105	GO:0006782: protoporphyrinogen IX biosynthetic process	7.40E-03
106	GO:0048829: root cap development	7.40E-03
107	GO:0045036: protein targeting to chloroplast	7.40E-03
108	GO:0009641: shade avoidance	7.40E-03
109	GO:0030001: metal ion transport	7.59E-03
110	GO:0006631: fatty acid metabolic process	7.91E-03
111	GO:0009073: aromatic amino acid family biosynthetic process	8.19E-03
112	GO:0048229: gametophyte development	8.19E-03
113	GO:0010588: cotyledon vascular tissue pattern formation	9.85E-03
114	GO:0010102: lateral root morphogenesis	9.85E-03
115	GO:0009785: blue light signaling pathway	9.85E-03
116	GO:0050826: response to freezing	9.85E-03
117	GO:0010075: regulation of meristem growth	9.85E-03
118	GO:0009266: response to temperature stimulus	1.07E-02
119	GO:0009934: regulation of meristem structural organization	1.07E-02
120	GO:0006508: proteolysis	1.12E-02
121	GO:0010030: positive regulation of seed germination	1.16E-02
122	GO:0010025: wax biosynthetic process	1.25E-02
123	GO:0030154: cell differentiation	1.28E-02
124	GO:0010187: negative regulation of seed germination	1.35E-02
125	GO:0005992: trehalose biosynthetic process	1.35E-02
126	GO:0015979: photosynthesis	1.52E-02
127	GO:0003333: amino acid transmembrane transport	1.55E-02
128	GO:0048511: rhythmic process	1.55E-02
129	GO:0030245: cellulose catabolic process	1.65E-02
130	GO:0009624: response to nematode	1.65E-02
131	GO:0006730: one-carbon metabolic process	1.65E-02
132	GO:0009686: gibberellin biosynthetic process	1.76E-02
133	GO:0009742: brassinosteroid mediated signaling pathway	1.76E-02
134	GO:0016117: carotenoid biosynthetic process	1.97E-02
135	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.97E-02
136	GO:0048653: anther development	2.09E-02
137	GO:0042631: cellular response to water deprivation	2.09E-02
138	GO:0000413: protein peptidyl-prolyl isomerization	2.09E-02
139	GO:0009058: biosynthetic process	2.19E-02
140	GO:0009960: endosperm development	2.20E-02
141	GO:0006520: cellular amino acid metabolic process	2.20E-02
142	GO:0010182: sugar mediated signaling pathway	2.20E-02
143	GO:0009646: response to absence of light	2.32E-02
144	GO:0048544: recognition of pollen	2.32E-02
145	GO:0006814: sodium ion transport	2.32E-02
146	GO:0042752: regulation of circadian rhythm	2.32E-02
147	GO:0009790: embryo development	2.42E-02
148	GO:0048825: cotyledon development	2.43E-02
149	GO:0010583: response to cyclopentenone	2.68E-02
150	GO:0032502: developmental process	2.68E-02
151	GO:0010090: trichome morphogenesis	2.80E-02
152	GO:1901657: glycosyl compound metabolic process	2.80E-02
153	GO:0009567: double fertilization forming a zygote and endosperm	2.93E-02
154	GO:0007267: cell-cell signaling	3.06E-02
155	GO:0010029: regulation of seed germination	3.46E-02
156	GO:0009607: response to biotic stimulus	3.46E-02
157	GO:0007275: multicellular organism development	3.47E-02
158	GO:0009627: systemic acquired resistance	3.59E-02
159	GO:0009832: plant-type cell wall biogenesis	4.16E-02
160	GO:0009631: cold acclimation	4.45E-02
161	GO:0042254: ribosome biogenesis	4.50E-02
162	GO:0009793: embryo development ending in seed dormancy	4.53E-02
163	GO:0006865: amino acid transport	4.60E-02

Rank	GO Term	Adjusted P value
1	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
2	GO:0005363: maltose transmembrane transporter activity	0.00E+00
3	GO:0010303: limit dextrinase activity	0.00E+00
4	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
5	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
6	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
7	GO:0051060: pullulanase activity	0.00E+00
8	GO:0047661: amino-acid racemase activity	0.00E+00
9	GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity	0.00E+00
10	GO:0005201: extracellular matrix structural constituent	0.00E+00
11	GO:0005504: fatty acid binding	1.11E-05
12	GO:0045430: chalcone isomerase activity	4.54E-05
13	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	2.57E-04
14	GO:0008184: glycogen phosphorylase activity	2.57E-04
15	GO:0050308: sugar-phosphatase activity	2.57E-04
16	GO:0010313: phytochrome binding	2.57E-04
17	GO:0004134: 4-alpha-glucanotransferase activity	2.57E-04
18	GO:0004645: phosphorylase activity	2.57E-04
19	GO:0009374: biotin binding	2.57E-04
20	GO:0019203: carbohydrate phosphatase activity	2.57E-04
21	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	2.57E-04
22	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	2.57E-04
23	GO:0050139: nicotinate-N-glucosyltransferase activity	2.57E-04
24	GO:0004817: cysteine-tRNA ligase activity	5.68E-04
25	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	5.68E-04
26	GO:0003919: FMN adenylyltransferase activity	5.68E-04
27	GO:0008493: tetracycline transporter activity	5.68E-04
28	GO:0016630: protochlorophyllide reductase activity	5.68E-04
29	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	5.68E-04
30	GO:0004614: phosphoglucomutase activity	5.68E-04
31	GO:0008083: growth factor activity	8.40E-04
32	GO:0015462: ATPase-coupled protein transmembrane transporter activity	9.22E-04
33	GO:0050833: pyruvate transmembrane transporter activity	9.22E-04
34	GO:0045174: glutathione dehydrogenase (ascorbate) activity	9.22E-04
35	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	9.22E-04
36	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	1.32E-03
37	GO:0016851: magnesium chelatase activity	1.32E-03
38	GO:0043023: ribosomal large subunit binding	1.32E-03
39	GO:0008508: bile acid:sodium symporter activity	1.32E-03
40	GO:0009055: electron carrier activity	1.33E-03
41	GO:0004659: prenyltransferase activity	1.76E-03
42	GO:0003959: NADPH dehydrogenase activity	2.25E-03
43	GO:0003989: acetyl-CoA carboxylase activity	2.25E-03
44	GO:0001085: RNA polymerase II transcription factor binding	2.26E-03
45	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.77E-03
46	GO:0004556: alpha-amylase activity	2.77E-03
47	GO:2001070: starch binding	2.77E-03
48	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	3.33E-03
49	GO:0008237: metallopeptidase activity	3.59E-03
50	GO:0019843: rRNA binding	3.71E-03
51	GO:0046914: transition metal ion binding	5.22E-03
52	GO:0008173: RNA methyltransferase activity	5.22E-03
53	GO:0004222: metalloendopeptidase activity	5.79E-03
54	GO:0046983: protein dimerization activity	5.90E-03
55	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	5.92E-03
56	GO:0005507: copper ion binding	5.98E-03
57	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	6.07E-03
58	GO:0044183: protein binding involved in protein folding	8.19E-03
59	GO:0004089: carbonate dehydratase activity	9.85E-03
60	GO:0016788: hydrolase activity, acting on ester bonds	9.98E-03
61	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.00E-02
62	GO:0008146: sulfotransferase activity	1.16E-02
63	GO:0005528: FK506 binding	1.35E-02
64	GO:0043424: protein histidine kinase binding	1.45E-02
65	GO:0052689: carboxylic ester hydrolase activity	1.46E-02
66	GO:0004176: ATP-dependent peptidase activity	1.55E-02
67	GO:0033612: receptor serine/threonine kinase binding	1.55E-02
68	GO:0030570: pectate lyase activity	1.76E-02
69	GO:0008810: cellulase activity	1.76E-02
70	GO:0003727: single-stranded RNA binding	1.86E-02
71	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.13E-02
72	GO:0004252: serine-type endopeptidase activity	2.30E-02
73	GO:0030170: pyridoxal phosphate binding	2.30E-02
74	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	2.36E-02
75	GO:0019901: protein kinase binding	2.43E-02
76	GO:0016791: phosphatase activity	2.93E-02
77	GO:0008483: transaminase activity	3.06E-02
78	GO:0016597: amino acid binding	3.19E-02
79	GO:0042802: identical protein binding	3.64E-02
80	GO:0102483: scopolin beta-glucosidase activity	3.73E-02
81	GO:0008236: serine-type peptidase activity	3.87E-02
82	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.01E-02
83	GO:0000287: magnesium ion binding	4.34E-02
84	GO:0003682: chromatin binding	4.67E-02
85	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	3.29E-15
2	GO:0009570: chloroplast stroma	2.35E-14
3	GO:0009941: chloroplast envelope	4.89E-13
4	GO:0009534: chloroplast thylakoid	1.06E-07
5	GO:0009535: chloroplast thylakoid membrane	1.95E-04
6	GO:0031969: chloroplast membrane	5.95E-04
7	GO:0019897: extrinsic component of plasma membrane	9.22E-04
8	GO:0010007: magnesium chelatase complex	9.22E-04
9	GO:0009317: acetyl-CoA carboxylase complex	9.22E-04
10	GO:0046658: anchored component of plasma membrane	1.59E-03
11	GO:0009706: chloroplast inner membrane	2.79E-03
12	GO:0009840: chloroplastic endopeptidase Clp complex	3.33E-03
13	GO:0009543: chloroplast thylakoid lumen	3.71E-03
14	GO:0009533: chloroplast stromal thylakoid	3.93E-03
15	GO:0005667: transcription factor complex	4.49E-03
16	GO:0009501: amyloplast	4.56E-03
17	GO:0009536: plastid	4.99E-03
18	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.92E-03
19	GO:0005615: extracellular space	6.44E-03
20	GO:0031225: anchored component of membrane	7.01E-03
21	GO:0031977: thylakoid lumen	7.91E-03
22	GO:0090404: pollen tube tip	8.19E-03
23	GO:0009532: plastid stroma	1.55E-02
24	GO:0009579: thylakoid	1.59E-02
25	GO:0009505: plant-type cell wall	1.63E-02
26	GO:0010319: stromule	3.06E-02
27	GO:0009707: chloroplast outer membrane	4.01E-02