co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G16590

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
2	GO:0000372: Group I intron splicing	0.00E+00
3	GO:0043972: histone H3-K23 acetylation	0.00E+00
4	GO:0080127: fruit septum development	0.00E+00
5	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
6	GO:0046486: glycerolipid metabolic process	0.00E+00
7	GO:0006907: pinocytosis	0.00E+00
8	GO:0044154: histone H3-K14 acetylation	0.00E+00
9	GO:0045014: negative regulation of transcription by glucose	0.00E+00
10	GO:0045176: apical protein localization	0.00E+00
11	GO:0000373: Group II intron splicing	5.37E-05
12	GO:0009451: RNA modification	2.38E-04
13	GO:0043087: regulation of GTPase activity	5.00E-04
14	GO:0043609: regulation of carbon utilization	5.00E-04
15	GO:0006436: tryptophanyl-tRNA aminoacylation	5.00E-04
16	GO:0051013: microtubule severing	5.00E-04
17	GO:0034757: negative regulation of iron ion transport	5.00E-04
18	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	5.00E-04
19	GO:0051171: regulation of nitrogen compound metabolic process	5.00E-04
20	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	5.00E-04
21	GO:0043971: histone H3-K18 acetylation	5.00E-04
22	GO:0009958: positive gravitropism	7.81E-04
23	GO:0006002: fructose 6-phosphate metabolic process	7.83E-04
24	GO:0080005: photosystem stoichiometry adjustment	1.08E-03
25	GO:0080175: phragmoplast microtubule organization	1.08E-03
26	GO:0006650: glycerophospholipid metabolic process	1.08E-03
27	GO:0010271: regulation of chlorophyll catabolic process	1.08E-03
28	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	1.08E-03
29	GO:0001736: establishment of planar polarity	1.08E-03
30	GO:0010583: response to cyclopentenone	1.10E-03
31	GO:0009793: embryo development ending in seed dormancy	1.48E-03
32	GO:0045037: protein import into chloroplast stroma	1.70E-03
33	GO:0010582: floral meristem determinacy	1.70E-03
34	GO:0006013: mannose metabolic process	1.76E-03
35	GO:0042780: tRNA 3'-end processing	1.76E-03
36	GO:0045493: xylan catabolic process	1.76E-03
37	GO:0030029: actin filament-based process	1.76E-03
38	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	1.76E-03
39	GO:0006000: fructose metabolic process	1.76E-03
40	GO:0046168: glycerol-3-phosphate catabolic process	1.76E-03
41	GO:0080117: secondary growth	1.76E-03
42	GO:0010411: xyloglucan metabolic process	2.00E-03
43	GO:0010540: basipetal auxin transport	2.18E-03
44	GO:0009658: chloroplast organization	2.32E-03
45	GO:0009825: multidimensional cell growth	2.45E-03
46	GO:0080188: RNA-directed DNA methylation	2.45E-03
47	GO:0010255: glucose mediated signaling pathway	2.56E-03
48	GO:2000904: regulation of starch metabolic process	2.56E-03
49	GO:0045017: glycerolipid biosynthetic process	2.56E-03
50	GO:0051513: regulation of monopolar cell growth	2.56E-03
51	GO:0009102: biotin biosynthetic process	2.56E-03
52	GO:0051639: actin filament network formation	2.56E-03
53	GO:0034059: response to anoxia	2.56E-03
54	GO:0010239: chloroplast mRNA processing	2.56E-03
55	GO:0044211: CTP salvage	2.56E-03
56	GO:0006072: glycerol-3-phosphate metabolic process	2.56E-03
57	GO:0009800: cinnamic acid biosynthetic process	2.56E-03
58	GO:0044206: UMP salvage	3.44E-03
59	GO:0006021: inositol biosynthetic process	3.44E-03
60	GO:0009956: radial pattern formation	3.44E-03
61	GO:0051764: actin crosslink formation	3.44E-03
62	GO:0015846: polyamine transport	3.44E-03
63	GO:0009734: auxin-activated signaling pathway	3.75E-03
64	GO:0009926: auxin polar transport	4.27E-03
65	GO:0009696: salicylic acid metabolic process	4.41E-03
66	GO:0051225: spindle assembly	4.41E-03
67	GO:0010158: abaxial cell fate specification	4.41E-03
68	GO:0006284: base-excision repair	4.78E-03
69	GO:0006559: L-phenylalanine catabolic process	5.46E-03
70	GO:0048831: regulation of shoot system development	5.46E-03
71	GO:0006206: pyrimidine nucleobase metabolic process	5.46E-03
72	GO:0003006: developmental process involved in reproduction	5.46E-03
73	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	5.46E-03
74	GO:0048827: phyllome development	5.46E-03
75	GO:0016554: cytidine to uridine editing	5.46E-03
76	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	5.46E-03
77	GO:0045489: pectin biosynthetic process	6.04E-03
78	GO:0009942: longitudinal axis specification	6.60E-03
79	GO:0048509: regulation of meristem development	6.60E-03
80	GO:0048444: floral organ morphogenesis	6.60E-03
81	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	6.60E-03
82	GO:0002229: defense response to oomycetes	7.48E-03
83	GO:0000082: G1/S transition of mitotic cell cycle	7.80E-03
84	GO:0010444: guard mother cell differentiation	7.80E-03
85	GO:0006401: RNA catabolic process	7.80E-03
86	GO:0010050: vegetative phase change	7.80E-03
87	GO:0009850: auxin metabolic process	9.09E-03
88	GO:0006353: DNA-templated transcription, termination	9.09E-03
89	GO:0000105: histidine biosynthetic process	9.09E-03
90	GO:0009657: plastid organization	1.04E-02
91	GO:0032544: plastid translation	1.04E-02
92	GO:0007389: pattern specification process	1.04E-02
93	GO:0044030: regulation of DNA methylation	1.04E-02
94	GO:0009932: cell tip growth	1.04E-02
95	GO:0071482: cellular response to light stimulus	1.04E-02
96	GO:0009827: plant-type cell wall modification	1.04E-02
97	GO:0007186: G-protein coupled receptor signaling pathway	1.04E-02
98	GO:0016126: sterol biosynthetic process	1.09E-02
99	GO:0048507: meristem development	1.19E-02
100	GO:0046916: cellular transition metal ion homeostasis	1.19E-02
101	GO:0048589: developmental growth	1.19E-02
102	GO:0009056: catabolic process	1.19E-02
103	GO:0009627: systemic acquired resistance	1.21E-02
104	GO:0016571: histone methylation	1.34E-02
105	GO:0008202: steroid metabolic process	1.34E-02
106	GO:0016573: histone acetylation	1.34E-02
107	GO:1900865: chloroplast RNA modification	1.34E-02
108	GO:0010380: regulation of chlorophyll biosynthetic process	1.34E-02
109	GO:0030244: cellulose biosynthetic process	1.42E-02
110	GO:0019538: protein metabolic process	1.49E-02
111	GO:0006535: cysteine biosynthetic process from serine	1.49E-02
112	GO:0009832: plant-type cell wall biogenesis	1.49E-02
113	GO:0048829: root cap development	1.49E-02
114	GO:0000160: phosphorelay signal transduction system	1.49E-02
115	GO:0010192: mucilage biosynthetic process	1.49E-02
116	GO:0006782: protoporphyrinogen IX biosynthetic process	1.49E-02
117	GO:0009089: lysine biosynthetic process via diaminopimelate	1.65E-02
118	GO:0016485: protein processing	1.65E-02
119	GO:0048765: root hair cell differentiation	1.65E-02
120	GO:0009910: negative regulation of flower development	1.65E-02
121	GO:0010152: pollen maturation	1.82E-02
122	GO:0009416: response to light stimulus	1.82E-02
123	GO:0006790: sulfur compound metabolic process	1.82E-02
124	GO:0010229: inflorescence development	1.99E-02
125	GO:0009718: anthocyanin-containing compound biosynthetic process	1.99E-02
126	GO:0030001: metal ion transport	2.06E-02
127	GO:0009933: meristem structural organization	2.17E-02
128	GO:0009266: response to temperature stimulus	2.17E-02
129	GO:0009934: regulation of meristem structural organization	2.17E-02
130	GO:0048467: gynoecium development	2.17E-02
131	GO:0010020: chloroplast fission	2.17E-02
132	GO:0046854: phosphatidylinositol phosphorylation	2.36E-02
133	GO:0010053: root epidermal cell differentiation	2.36E-02
134	GO:0042546: cell wall biogenesis	2.43E-02
135	GO:0006863: purine nucleobase transport	2.55E-02
136	GO:0009833: plant-type primary cell wall biogenesis	2.55E-02
137	GO:0009965: leaf morphogenesis	2.62E-02
138	GO:0080147: root hair cell development	2.74E-02
139	GO:0006338: chromatin remodeling	2.74E-02
140	GO:0010187: negative regulation of seed germination	2.74E-02
141	GO:0051017: actin filament bundle assembly	2.74E-02
142	GO:0006289: nucleotide-excision repair	2.74E-02
143	GO:0019344: cysteine biosynthetic process	2.74E-02
144	GO:0009733: response to auxin	2.87E-02
145	GO:0043622: cortical microtubule organization	2.94E-02
146	GO:0010073: meristem maintenance	2.94E-02
147	GO:0051302: regulation of cell division	2.94E-02
148	GO:0006418: tRNA aminoacylation for protein translation	2.94E-02
149	GO:0006364: rRNA processing	3.14E-02
150	GO:0009736: cytokinin-activated signaling pathway	3.14E-02
151	GO:0003333: amino acid transmembrane transport	3.15E-02
152	GO:0006306: DNA methylation	3.15E-02
153	GO:0035428: hexose transmembrane transport	3.35E-02
154	GO:0016226: iron-sulfur cluster assembly	3.35E-02
155	GO:0009686: gibberellin biosynthetic process	3.57E-02
156	GO:0071215: cellular response to abscisic acid stimulus	3.57E-02
157	GO:0006096: glycolytic process	3.71E-02
158	GO:0042127: regulation of cell proliferation	3.79E-02
159	GO:0048443: stamen development	3.79E-02
160	GO:0010091: trichome branching	3.79E-02
161	GO:0016117: carotenoid biosynthetic process	4.01E-02
162	GO:0070417: cellular response to cold	4.01E-02
163	GO:0009740: gibberellic acid mediated signaling pathway	4.20E-02
164	GO:0000271: polysaccharide biosynthetic process	4.24E-02
165	GO:0010087: phloem or xylem histogenesis	4.24E-02
166	GO:0048653: anther development	4.24E-02
167	GO:0000226: microtubule cytoskeleton organization	4.24E-02
168	GO:0080167: response to karrikin	4.44E-02
169	GO:0009624: response to nematode	4.46E-02
170	GO:0010305: leaf vascular tissue pattern formation	4.47E-02
171	GO:0048868: pollen tube development	4.47E-02
172	GO:0046323: glucose import	4.47E-02
173	GO:0009741: response to brassinosteroid	4.47E-02
174	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.63E-02
175	GO:0051726: regulation of cell cycle	4.72E-02
176	GO:0048825: cotyledon development	4.94E-02
177	GO:0008654: phospholipid biosynthetic process	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0019808: polyamine binding	0.00E+00
2	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
3	GO:0004401: histidinol-phosphatase activity	0.00E+00
4	GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity	0.00E+00
5	GO:0008710: 8-amino-7-oxononanoate synthase activity	0.00E+00
6	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
7	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
8	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
9	GO:0008859: exoribonuclease II activity	0.00E+00
10	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
11	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
12	GO:0010011: auxin binding	1.39E-04
13	GO:0008725: DNA-3-methyladenine glycosylase activity	2.13E-04
14	GO:0008568: microtubule-severing ATPase activity	5.00E-04
15	GO:0080062: cytokinin 9-beta-glucosyltransferase activity	5.00E-04
16	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	5.00E-04
17	GO:0004830: tryptophan-tRNA ligase activity	5.00E-04
18	GO:0010347: L-galactose-1-phosphate phosphatase activity	5.00E-04
19	GO:0047807: cytokinin 7-beta-glucosyltransferase activity	5.00E-04
20	GO:0008836: diaminopimelate decarboxylase activity	5.00E-04
21	GO:0009884: cytokinin receptor activity	1.08E-03
22	GO:0050017: L-3-cyanoalanine synthase activity	1.08E-03
23	GO:0005094: Rho GDP-dissociation inhibitor activity	1.08E-03
24	GO:0010296: prenylcysteine methylesterase activity	1.08E-03
25	GO:0004047: aminomethyltransferase activity	1.08E-03
26	GO:0052832: inositol monophosphate 3-phosphatase activity	1.08E-03
27	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.08E-03
28	GO:0004109: coproporphyrinogen oxidase activity	1.08E-03
29	GO:0008805: carbon-monoxide oxygenase activity	1.08E-03
30	GO:0008934: inositol monophosphate 1-phosphatase activity	1.08E-03
31	GO:0052833: inositol monophosphate 4-phosphatase activity	1.08E-03
32	GO:0016805: dipeptidase activity	1.76E-03
33	GO:0005034: osmosensor activity	1.76E-03
34	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	1.76E-03
35	GO:0016707: gibberellin 3-beta-dioxygenase activity	1.76E-03
36	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	1.76E-03
37	GO:0045548: phenylalanine ammonia-lyase activity	1.76E-03
38	GO:0003913: DNA photolyase activity	1.76E-03
39	GO:0042781: 3'-tRNA processing endoribonuclease activity	1.76E-03
40	GO:0004519: endonuclease activity	2.25E-03
41	GO:0005096: GTPase activator activity	2.43E-03
42	GO:0080031: methyl salicylate esterase activity	2.56E-03
43	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	2.56E-03
44	GO:0000254: C-4 methylsterol oxidase activity	2.56E-03
45	GO:0003723: RNA binding	2.68E-03
46	GO:0043424: protein histidine kinase binding	3.34E-03
47	GO:0009044: xylan 1,4-beta-xylosidase activity	3.44E-03
48	GO:0046556: alpha-L-arabinofuranosidase activity	3.44E-03
49	GO:0004845: uracil phosphoribosyltransferase activity	3.44E-03
50	GO:0010328: auxin influx transmembrane transporter activity	3.44E-03
51	GO:0010385: double-stranded methylated DNA binding	3.44E-03
52	GO:0070628: proteasome binding	3.44E-03
53	GO:0030570: pectate lyase activity	4.39E-03
54	GO:0005471: ATP:ADP antiporter activity	4.41E-03
55	GO:0043621: protein self-association	4.72E-03
56	GO:0004462: lactoylglutathione lyase activity	5.46E-03
57	GO:2001070: starch binding	5.46E-03
58	GO:0080030: methyl indole-3-acetate esterase activity	5.46E-03
59	GO:0031593: polyubiquitin binding	5.46E-03
60	GO:0004849: uridine kinase activity	6.60E-03
61	GO:0019900: kinase binding	6.60E-03
62	GO:0004559: alpha-mannosidase activity	6.60E-03
63	GO:0004124: cysteine synthase activity	6.60E-03
64	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	6.60E-03
65	GO:0016762: xyloglucan:xyloglucosyl transferase activity	7.48E-03
66	GO:0019899: enzyme binding	7.80E-03
67	GO:0009881: photoreceptor activity	7.80E-03
68	GO:0003872: 6-phosphofructokinase activity	7.80E-03
69	GO:0008237: metallopeptidase activity	9.65E-03
70	GO:0008142: oxysterol binding	1.04E-02
71	GO:0046914: transition metal ion binding	1.04E-02
72	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.28E-02
73	GO:0009672: auxin:proton symporter activity	1.34E-02
74	GO:0004673: protein histidine kinase activity	1.49E-02
75	GO:0015020: glucuronosyltransferase activity	1.49E-02
76	GO:0008327: methyl-CpG binding	1.65E-02
77	GO:0004871: signal transducer activity	1.78E-02
78	GO:0010329: auxin efflux transmembrane transporter activity	1.99E-02
79	GO:0000155: phosphorelay sensor kinase activity	1.99E-02
80	GO:0009982: pseudouridine synthase activity	1.99E-02
81	GO:0000175: 3'-5'-exoribonuclease activity	1.99E-02
82	GO:0035091: phosphatidylinositol binding	2.52E-02
83	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	2.55E-02
84	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	2.55E-02
85	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	2.55E-02
86	GO:0008134: transcription factor binding	2.74E-02
87	GO:0004857: enzyme inhibitor activity	2.74E-02
88	GO:0043130: ubiquitin binding	2.74E-02
89	GO:0005345: purine nucleobase transmembrane transporter activity	2.94E-02
90	GO:0004540: ribonuclease activity	3.15E-02
91	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	3.35E-02
92	GO:0016760: cellulose synthase (UDP-forming) activity	3.57E-02
93	GO:0004812: aminoacyl-tRNA ligase activity	4.01E-02
94	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.08E-02
95	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.08E-02
96	GO:0005525: GTP binding	4.17E-02
97	GO:0004402: histone acetyltransferase activity	4.24E-02
98	GO:0003779: actin binding	4.33E-02
99	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	4.47E-02
100	GO:0001085: RNA polymerase II transcription factor binding	4.47E-02
101	GO:0010181: FMN binding	4.71E-02
102	GO:0005355: glucose transmembrane transporter activity	4.71E-02
103	GO:0019901: protein kinase binding	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0042597: periplasmic space	0.00E+00
2	GO:0009537: proplastid	0.00E+00
3	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
4	GO:0035452: extrinsic component of plastid membrane	0.00E+00
5	GO:0009507: chloroplast	7.19E-05
6	GO:0010370: perinucleolar chromocenter	5.00E-04
7	GO:0045254: pyruvate dehydrogenase complex	1.08E-03
8	GO:0009513: etioplast	1.08E-03
9	GO:0009570: chloroplast stroma	1.44E-03
10	GO:0009509: chromoplast	1.76E-03
11	GO:0070652: HAUS complex	1.76E-03
12	GO:0009331: glycerol-3-phosphate dehydrogenase complex	2.56E-03
13	GO:0032432: actin filament bundle	2.56E-03
14	GO:0009532: plastid stroma	3.68E-03
15	GO:0005945: 6-phosphofructokinase complex	4.41E-03
16	GO:0000178: exosome (RNase complex)	4.41E-03
17	GO:0009986: cell surface	7.80E-03
18	GO:0009501: amyloplast	9.09E-03
19	GO:0030529: intracellular ribonucleoprotein complex	1.09E-02
20	GO:0005720: nuclear heterochromatin	1.19E-02
21	GO:0009707: chloroplast outer membrane	1.42E-02
22	GO:0005884: actin filament	1.65E-02
23	GO:0005819: spindle	1.97E-02
24	GO:0016602: CCAAT-binding factor complex	1.99E-02
25	GO:0009574: preprophase band	1.99E-02
26	GO:0000419: DNA-directed RNA polymerase V complex	2.55E-02
27	GO:0009536: plastid	3.37E-02
28	GO:0005874: microtubule	4.26E-02
29	GO:0009706: chloroplast inner membrane	4.46E-02
30	GO:0005770: late endosome	4.47E-02
31	GO:0009941: chloroplast envelope	4.93E-02
32	GO:0031965: nuclear membrane	4.94E-02
33	GO:0005886: plasma membrane	4.94E-02