co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G16550

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0033528: S-methylmethionine cycle	0.00E+00
2	GO:1905177: tracheary element differentiation	0.00E+00
3	GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
4	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
5	GO:0070979: protein K11-linked ubiquitination	0.00E+00
6	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
7	GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
8	GO:0006573: valine metabolic process	0.00E+00
9	GO:0006114: glycerol biosynthetic process	0.00E+00
10	GO:0000455: enzyme-directed rRNA pseudouridine synthesis	0.00E+00
11	GO:0080110: sporopollenin biosynthetic process	6.58E-05
12	GO:0000012: single strand break repair	2.43E-04
13	GO:0043266: regulation of potassium ion transport	2.43E-04
14	GO:0010080: regulation of floral meristem growth	2.43E-04
15	GO:0006551: leucine metabolic process	2.43E-04
16	GO:2000021: regulation of ion homeostasis	2.43E-04
17	GO:0070574: cadmium ion transmembrane transport	2.43E-04
18	GO:0090548: response to nitrate starvation	2.43E-04
19	GO:0000066: mitochondrial ornithine transport	2.43E-04
20	GO:0051382: kinetochore assembly	2.43E-04
21	GO:1902025: nitrate import	2.43E-04
22	GO:0009090: homoserine biosynthetic process	2.43E-04
23	GO:0009086: methionine biosynthetic process	3.94E-04
24	GO:1900871: chloroplast mRNA modification	5.39E-04
25	GO:0031297: replication fork processing	5.39E-04
26	GO:0006435: threonyl-tRNA aminoacylation	5.39E-04
27	GO:0010207: photosystem II assembly	7.77E-04
28	GO:0031145: anaphase-promoting complex-dependent catabolic process	8.75E-04
29	GO:0010623: programmed cell death involved in cell development	8.75E-04
30	GO:0006696: ergosterol biosynthetic process	8.75E-04
31	GO:0005977: glycogen metabolic process	8.75E-04
32	GO:0010022: meristem determinacy	8.75E-04
33	GO:0046836: glycolipid transport	1.25E-03
34	GO:0009067: aspartate family amino acid biosynthetic process	1.25E-03
35	GO:0030071: regulation of mitotic metaphase/anaphase transition	1.25E-03
36	GO:0042989: sequestering of actin monomers	1.25E-03
37	GO:0010584: pollen exine formation	1.66E-03
38	GO:0010021: amylopectin biosynthetic process	1.67E-03
39	GO:0048442: sepal development	1.67E-03
40	GO:0051322: anaphase	1.67E-03
41	GO:0010508: positive regulation of autophagy	1.67E-03
42	GO:0008295: spermidine biosynthetic process	1.67E-03
43	GO:0009793: embryo development ending in seed dormancy	1.71E-03
44	GO:0016117: carotenoid biosynthetic process	1.79E-03
45	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.79E-03
46	GO:0030041: actin filament polymerization	2.13E-03
47	GO:0045038: protein import into chloroplast thylakoid membrane	2.13E-03
48	GO:0016123: xanthophyll biosynthetic process	2.13E-03
49	GO:0032876: negative regulation of DNA endoreduplication	2.13E-03
50	GO:0007059: chromosome segregation	2.24E-03
51	GO:0010190: cytochrome b6f complex assembly	2.62E-03
52	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.62E-03
53	GO:0007264: small GTPase mediated signal transduction	2.75E-03
54	GO:0010076: maintenance of floral meristem identity	3.15E-03
55	GO:0009082: branched-chain amino acid biosynthetic process	3.15E-03
56	GO:0009099: valine biosynthetic process	3.15E-03
57	GO:0009854: oxidative photosynthetic carbon pathway	3.15E-03
58	GO:0009088: threonine biosynthetic process	3.15E-03
59	GO:0042372: phylloquinone biosynthetic process	3.15E-03
60	GO:0051510: regulation of unidimensional cell growth	3.72E-03
61	GO:0000712: resolution of meiotic recombination intermediates	3.72E-03
62	GO:0032875: regulation of DNA endoreduplication	4.31E-03
63	GO:0048564: photosystem I assembly	4.31E-03
64	GO:0042255: ribosome assembly	4.31E-03
65	GO:0006353: DNA-templated transcription, termination	4.31E-03
66	GO:0070413: trehalose metabolism in response to stress	4.31E-03
67	GO:0006875: cellular metal ion homeostasis	4.31E-03
68	GO:0009097: isoleucine biosynthetic process	4.93E-03
69	GO:0032544: plastid translation	4.93E-03
70	GO:0007129: synapsis	4.93E-03
71	GO:0009657: plastid organization	4.93E-03
72	GO:0010206: photosystem II repair	5.59E-03
73	GO:0000373: Group II intron splicing	5.59E-03
74	GO:0009098: leucine biosynthetic process	6.27E-03
75	GO:0006259: DNA metabolic process	6.99E-03
76	GO:0048441: petal development	6.99E-03
77	GO:0006415: translational termination	7.73E-03
78	GO:0006265: DNA topological change	7.73E-03
79	GO:0009089: lysine biosynthetic process via diaminopimelate	7.73E-03
80	GO:0045037: protein import into chloroplast stroma	8.49E-03
81	GO:0010582: floral meristem determinacy	8.49E-03
82	GO:0009658: chloroplast organization	8.77E-03
83	GO:0006302: double-strand break repair	1.01E-02
84	GO:0048440: carpel development	1.01E-02
85	GO:0090351: seedling development	1.10E-02
86	GO:0006289: nucleotide-excision repair	1.27E-02
87	GO:0005992: trehalose biosynthetic process	1.27E-02
88	GO:0030150: protein import into mitochondrial matrix	1.27E-02
89	GO:0007010: cytoskeleton organization	1.27E-02
90	GO:0048316: seed development	1.30E-02
91	GO:0055114: oxidation-reduction process	1.34E-02
92	GO:0008299: isoprenoid biosynthetic process	1.37E-02
93	GO:0031348: negative regulation of defense response	1.56E-02
94	GO:0010089: xylem development	1.76E-02
95	GO:0048443: stamen development	1.76E-02
96	GO:0019722: calcium-mediated signaling	1.76E-02
97	GO:0032259: methylation	1.79E-02
98	GO:0008033: tRNA processing	1.97E-02
99	GO:0010087: phloem or xylem histogenesis	1.97E-02
100	GO:0010197: polar nucleus fusion	2.07E-02
101	GO:0046323: glucose import	2.07E-02
102	GO:0010268: brassinosteroid homeostasis	2.07E-02
103	GO:0045489: pectin biosynthetic process	2.07E-02
104	GO:0007018: microtubule-based movement	2.18E-02
105	GO:0019252: starch biosynthetic process	2.29E-02
106	GO:0055072: iron ion homeostasis	2.29E-02
107	GO:0016132: brassinosteroid biosynthetic process	2.41E-02
108	GO:0016032: viral process	2.52E-02
109	GO:0019761: glucosinolate biosynthetic process	2.52E-02
110	GO:0032502: developmental process	2.52E-02
111	GO:0010583: response to cyclopentenone	2.52E-02
112	GO:0016125: sterol metabolic process	2.76E-02
113	GO:0007267: cell-cell signaling	2.88E-02
114	GO:0007166: cell surface receptor signaling pathway	3.01E-02
115	GO:0000910: cytokinesis	3.01E-02
116	GO:0016126: sterol biosynthetic process	3.13E-02
117	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.26E-02
118	GO:0010029: regulation of seed germination	3.26E-02
119	GO:0048573: photoperiodism, flowering	3.52E-02
120	GO:0016311: dephosphorylation	3.65E-02
121	GO:0009738: abscisic acid-activated signaling pathway	3.71E-02
122	GO:0042254: ribosome biogenesis	4.15E-02
123	GO:0048527: lateral root development	4.19E-02
124	GO:0045087: innate immune response	4.48E-02
125	GO:0009853: photorespiration	4.48E-02
126	GO:0006839: mitochondrial transport	4.91E-02
127	GO:0030001: metal ion transport	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0050613: delta14-sterol reductase activity	0.00E+00
2	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
3	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
4	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
5	GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity	0.00E+00
6	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
7	GO:0046905: phytoene synthase activity	0.00E+00
8	GO:0019144: ADP-sugar diphosphatase activity	0.00E+00
9	GO:0043022: ribosome binding	2.22E-04
10	GO:0003690: double-stranded DNA binding	2.38E-04
11	GO:0016618: hydroxypyruvate reductase activity	2.43E-04
12	GO:0003984: acetolactate synthase activity	2.43E-04
13	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.43E-04
14	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	2.43E-04
15	GO:0004451: isocitrate lyase activity	2.43E-04
16	GO:0016776: phosphotransferase activity, phosphate group as acceptor	2.43E-04
17	GO:0080042: ADP-glucose pyrophosphohydrolase activity	2.43E-04
18	GO:0005290: L-histidine transmembrane transporter activity	2.43E-04
19	GO:0051996: squalene synthase activity	2.43E-04
20	GO:0004829: threonine-tRNA ligase activity	5.39E-04
21	GO:0019156: isoamylase activity	5.39E-04
22	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	5.39E-04
23	GO:0010291: carotene beta-ring hydroxylase activity	5.39E-04
24	GO:0080041: ADP-ribose pyrophosphohydrolase activity	5.39E-04
25	GO:0008898: S-adenosylmethionine-homocysteine S-methyltransferase activity	5.39E-04
26	GO:0004766: spermidine synthase activity	5.39E-04
27	GO:0000064: L-ornithine transmembrane transporter activity	5.39E-04
28	GO:0004412: homoserine dehydrogenase activity	5.39E-04
29	GO:0048531: beta-1,3-galactosyltransferase activity	5.39E-04
30	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	7.77E-04
31	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	8.75E-04
32	GO:0030267: glyoxylate reductase (NADP) activity	8.75E-04
33	GO:0070402: NADPH binding	8.75E-04
34	GO:0008430: selenium binding	8.75E-04
35	GO:0004180: carboxypeptidase activity	8.75E-04
36	GO:0003861: 3-isopropylmalate dehydratase activity	8.75E-04
37	GO:0015086: cadmium ion transmembrane transporter activity	1.25E-03
38	GO:0016149: translation release factor activity, codon specific	1.25E-03
39	GO:0004300: enoyl-CoA hydratase activity	1.25E-03
40	GO:0015189: L-lysine transmembrane transporter activity	1.25E-03
41	GO:0017089: glycolipid transporter activity	1.25E-03
42	GO:0004072: aspartate kinase activity	1.25E-03
43	GO:0005354: galactose transmembrane transporter activity	1.25E-03
44	GO:0015181: arginine transmembrane transporter activity	1.25E-03
45	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.25E-03
46	GO:0042277: peptide binding	1.67E-03
47	GO:0016836: hydro-lyase activity	1.67E-03
48	GO:0051861: glycolipid binding	1.67E-03
49	GO:0052793: pectin acetylesterase activity	1.67E-03
50	GO:0070628: proteasome binding	1.67E-03
51	GO:0003785: actin monomer binding	2.13E-03
52	GO:0050662: coenzyme binding	2.24E-03
53	GO:0004556: alpha-amylase activity	2.62E-03
54	GO:0031593: polyubiquitin binding	2.62E-03
55	GO:0004656: procollagen-proline 4-dioxygenase activity	3.15E-03
56	GO:0016597: amino acid binding	3.50E-03
57	GO:0015103: inorganic anion transmembrane transporter activity	3.72E-03
58	GO:0015144: carbohydrate transmembrane transporter activity	4.20E-03
59	GO:0016787: hydrolase activity	4.31E-03
60	GO:0008236: serine-type peptidase activity	4.60E-03
61	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.60E-03
62	GO:0016491: oxidoreductase activity	4.87E-03
63	GO:0005351: sugar:proton symporter activity	4.88E-03
64	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	4.93E-03
65	GO:0003747: translation release factor activity	5.59E-03
66	GO:0004672: protein kinase activity	6.04E-03
67	GO:0005525: GTP binding	6.65E-03
68	GO:0004805: trehalose-phosphatase activity	6.99E-03
69	GO:0005089: Rho guanyl-nucleotide exchange factor activity	7.73E-03
70	GO:0008081: phosphoric diester hydrolase activity	9.29E-03
71	GO:0009982: pseudouridine synthase activity	9.29E-03
72	GO:0015266: protein channel activity	9.29E-03
73	GO:0003723: RNA binding	1.25E-02
74	GO:0031418: L-ascorbic acid binding	1.27E-02
75	GO:0043130: ubiquitin binding	1.27E-02
76	GO:0003727: single-stranded RNA binding	1.76E-02
77	GO:0003924: GTPase activity	1.89E-02
78	GO:0019843: rRNA binding	1.91E-02
79	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.96E-02
80	GO:0004527: exonuclease activity	2.07E-02
81	GO:0046873: metal ion transmembrane transporter activity	2.07E-02
82	GO:0016853: isomerase activity	2.18E-02
83	GO:0010181: FMN binding	2.18E-02
84	GO:0005355: glucose transmembrane transporter activity	2.18E-02
85	GO:0019901: protein kinase binding	2.29E-02
86	GO:0048038: quinone binding	2.41E-02
87	GO:0004518: nuclease activity	2.52E-02
88	GO:0003684: damaged DNA binding	2.76E-02
89	GO:0016791: phosphatase activity	2.76E-02
90	GO:0008017: microtubule binding	2.76E-02
91	GO:0005506: iron ion binding	2.99E-02
92	GO:0004721: phosphoprotein phosphatase activity	3.52E-02
93	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.78E-02
94	GO:0008168: methyltransferase activity	3.92E-02
95	GO:0030145: manganese ion binding	4.19E-02
96	GO:0003746: translation elongation factor activity	4.48E-02
97	GO:0003697: single-stranded DNA binding	4.48E-02
98	GO:0003993: acid phosphatase activity	4.62E-02
99	GO:0050661: NADP binding	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0005948: acetolactate synthase complex	0.00E+00
3	GO:0009507: chloroplast	1.74E-12
4	GO:0043240: Fanconi anaemia nuclear complex	2.43E-04
5	GO:0071821: FANCM-MHF complex	2.43E-04
6	GO:0080085: signal recognition particle, chloroplast targeting	5.39E-04
7	GO:0042651: thylakoid membrane	1.17E-03
8	GO:0009570: chloroplast stroma	1.28E-03
9	GO:0009535: chloroplast thylakoid membrane	1.58E-03
10	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	1.67E-03
11	GO:0031305: integral component of mitochondrial inner membrane	4.31E-03
12	GO:0009501: amyloplast	4.31E-03
13	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	4.93E-03
14	GO:0005680: anaphase-promoting complex	5.59E-03
15	GO:0016604: nuclear body	6.27E-03
16	GO:0046658: anchored component of plasma membrane	7.19E-03
17	GO:0009574: preprophase band	9.29E-03
18	GO:0005938: cell cortex	9.29E-03
19	GO:0030176: integral component of endoplasmic reticulum membrane	1.10E-02
20	GO:0009536: plastid	1.36E-02
21	GO:0015629: actin cytoskeleton	1.66E-02
22	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.76E-02
23	GO:0010287: plastoglobule	1.81E-02
24	GO:0005871: kinesin complex	1.86E-02
25	GO:0005623: cell	1.96E-02
26	GO:0009295: nucleoid	2.88E-02
27	GO:0019005: SCF ubiquitin ligase complex	3.78E-02
28	GO:0005874: microtubule	4.86E-02