Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G16400

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1901918: negative regulation of exoribonuclease activity0.00E+00
2GO:0033494: ferulate metabolic process0.00E+00
3GO:0061635: regulation of protein complex stability0.00E+00
4GO:0005996: monosaccharide metabolic process0.00E+00
5GO:0035674: tricarboxylic acid transmembrane transport0.00E+00
6GO:0046471: phosphatidylglycerol metabolic process0.00E+00
7GO:0009773: photosynthetic electron transport in photosystem I8.81E-09
8GO:0015979: photosynthesis2.39E-08
9GO:0010207: photosystem II assembly2.89E-08
10GO:0090391: granum assembly2.93E-08
11GO:0006636: unsaturated fatty acid biosynthetic process3.02E-06
12GO:0071484: cellular response to light intensity3.21E-05
13GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.21E-05
14GO:0006094: gluconeogenesis5.34E-05
15GO:0015994: chlorophyll metabolic process5.77E-05
16GO:0010143: cutin biosynthetic process6.46E-05
17GO:0015995: chlorophyll biosynthetic process7.63E-05
18GO:0009768: photosynthesis, light harvesting in photosystem I1.24E-04
19GO:0042549: photosystem II stabilization1.32E-04
20GO:0010190: cytochrome b6f complex assembly1.32E-04
21GO:0009853: photorespiration1.42E-04
22GO:1901259: chloroplast rRNA processing1.81E-04
23GO:0009854: oxidative photosynthetic carbon pathway1.81E-04
24GO:0006631: fatty acid metabolic process1.91E-04
25GO:0006633: fatty acid biosynthetic process2.18E-04
26GO:0010114: response to red light2.20E-04
27GO:0010196: nonphotochemical quenching2.36E-04
28GO:0010028: xanthophyll cycle2.97E-04
29GO:0034337: RNA folding2.97E-04
30GO:0006835: dicarboxylic acid transport2.97E-04
31GO:0005980: glycogen catabolic process2.97E-04
32GO:0046467: membrane lipid biosynthetic process2.97E-04
33GO:0015671: oxygen transport2.97E-04
34GO:0071277: cellular response to calcium ion2.97E-04
35GO:0019544: arginine catabolic process to glutamate2.97E-04
36GO:0080093: regulation of photorespiration2.97E-04
37GO:0031998: regulation of fatty acid beta-oxidation2.97E-04
38GO:0006810: transport3.64E-04
39GO:0032544: plastid translation3.66E-04
40GO:0006098: pentose-phosphate shunt4.41E-04
41GO:0010206: photosystem II repair4.41E-04
42GO:0006096: glycolytic process4.67E-04
43GO:0055114: oxidation-reduction process6.00E-04
44GO:0006729: tetrahydrobiopterin biosynthetic process6.50E-04
45GO:0080029: cellular response to boron-containing substance levels6.50E-04
46GO:0006898: receptor-mediated endocytosis6.50E-04
47GO:0071457: cellular response to ozone6.50E-04
48GO:0016122: xanthophyll metabolic process6.50E-04
49GO:0006518: peptide metabolic process1.05E-03
50GO:0010025: wax biosynthetic process1.27E-03
51GO:0006020: inositol metabolic process1.51E-03
52GO:0009152: purine ribonucleotide biosynthetic process1.51E-03
53GO:0046653: tetrahydrofolate metabolic process1.51E-03
54GO:0009052: pentose-phosphate shunt, non-oxidative branch1.51E-03
55GO:0046713: borate transport1.51E-03
56GO:1902358: sulfate transmembrane transport1.51E-03
57GO:0032259: methylation1.56E-03
58GO:0019748: secondary metabolic process1.86E-03
59GO:0015976: carbon utilization2.02E-03
60GO:0071486: cellular response to high light intensity2.02E-03
61GO:0009765: photosynthesis, light harvesting2.02E-03
62GO:0045727: positive regulation of translation2.02E-03
63GO:2000122: negative regulation of stomatal complex development2.02E-03
64GO:0006021: inositol biosynthetic process2.02E-03
65GO:0071483: cellular response to blue light2.02E-03
66GO:0010037: response to carbon dioxide2.02E-03
67GO:0042631: cellular response to water deprivation2.57E-03
68GO:0006465: signal peptide processing2.58E-03
69GO:0071493: cellular response to UV-B2.58E-03
70GO:0006564: L-serine biosynthetic process2.58E-03
71GO:0009904: chloroplast accumulation movement2.58E-03
72GO:0006097: glyoxylate cycle2.58E-03
73GO:1902456: regulation of stomatal opening3.19E-03
74GO:0046855: inositol phosphate dephosphorylation3.19E-03
75GO:0080167: response to karrikin3.84E-03
76GO:0005975: carbohydrate metabolic process3.84E-03
77GO:0071333: cellular response to glucose stimulus3.84E-03
78GO:0009955: adaxial/abaxial pattern specification3.84E-03
79GO:0009903: chloroplast avoidance movement3.84E-03
80GO:0010189: vitamin E biosynthetic process3.84E-03
81GO:0009735: response to cytokinin3.96E-03
82GO:0009772: photosynthetic electron transport in photosystem II4.53E-03
83GO:0008272: sulfate transport4.53E-03
84GO:0009769: photosynthesis, light harvesting in photosystem II4.53E-03
85GO:1900057: positive regulation of leaf senescence4.53E-03
86GO:0009645: response to low light intensity stimulus4.53E-03
87GO:0009416: response to light stimulus4.63E-03
88GO:0010027: thylakoid membrane organization4.94E-03
89GO:0019827: stem cell population maintenance5.26E-03
90GO:0008610: lipid biosynthetic process5.26E-03
91GO:0070413: trehalose metabolism in response to stress5.26E-03
92GO:0009704: de-etiolation5.26E-03
93GO:2000031: regulation of salicylic acid mediated signaling pathway6.03E-03
94GO:0071482: cellular response to light stimulus6.03E-03
95GO:0019430: removal of superoxide radicals6.03E-03
96GO:0009657: plastid organization6.03E-03
97GO:0018298: protein-chromophore linkage6.45E-03
98GO:0009821: alkaloid biosynthetic process6.83E-03
99GO:0019432: triglyceride biosynthetic process6.83E-03
100GO:0090333: regulation of stomatal closure6.83E-03
101GO:0006783: heme biosynthetic process6.83E-03
102GO:0006754: ATP biosynthetic process6.83E-03
103GO:0010218: response to far red light7.11E-03
104GO:0010205: photoinhibition7.67E-03
105GO:0006779: porphyrin-containing compound biosynthetic process7.67E-03
106GO:0005982: starch metabolic process7.67E-03
107GO:0009637: response to blue light8.18E-03
108GO:0006782: protoporphyrinogen IX biosynthetic process8.55E-03
109GO:0009641: shade avoidance8.55E-03
110GO:0000272: polysaccharide catabolic process9.46E-03
111GO:0018119: peptidyl-cysteine S-nitrosylation9.46E-03
112GO:0006790: sulfur compound metabolic process1.04E-02
113GO:0002213: defense response to insect1.04E-02
114GO:0016024: CDP-diacylglycerol biosynthetic process1.04E-02
115GO:0009725: response to hormone1.14E-02
116GO:0009767: photosynthetic electron transport chain1.14E-02
117GO:0006108: malate metabolic process1.14E-02
118GO:0006006: glucose metabolic process1.14E-02
119GO:0009266: response to temperature stimulus1.24E-02
120GO:0019253: reductive pentose-phosphate cycle1.24E-02
121GO:0007015: actin filament organization1.24E-02
122GO:0010223: secondary shoot formation1.24E-02
123GO:0046854: phosphatidylinositol phosphorylation1.34E-02
124GO:0006364: rRNA processing1.43E-02
125GO:0019762: glucosinolate catabolic process1.45E-02
126GO:0005992: trehalose biosynthetic process1.56E-02
127GO:0009695: jasmonic acid biosynthetic process1.68E-02
128GO:0061077: chaperone-mediated protein folding1.79E-02
129GO:0009269: response to desiccation1.79E-02
130GO:0016998: cell wall macromolecule catabolic process1.79E-02
131GO:0016226: iron-sulfur cluster assembly1.91E-02
132GO:2000022: regulation of jasmonic acid mediated signaling pathway1.91E-02
133GO:0030433: ubiquitin-dependent ERAD pathway1.91E-02
134GO:0071215: cellular response to abscisic acid stimulus2.03E-02
135GO:0042335: cuticle development2.42E-02
136GO:0000413: protein peptidyl-prolyl isomerization2.42E-02
137GO:0071472: cellular response to salt stress2.55E-02
138GO:0006520: cellular amino acid metabolic process2.55E-02
139GO:0009409: response to cold2.64E-02
140GO:0015986: ATP synthesis coupled proton transport2.68E-02
141GO:0009058: biosynthetic process2.69E-02
142GO:0019252: starch biosynthetic process2.82E-02
143GO:0010193: response to ozone2.96E-02
144GO:0009630: gravitropism3.10E-02
145GO:0032502: developmental process3.10E-02
146GO:1901657: glycosyl compound metabolic process3.25E-02
147GO:0046686: response to cadmium ion3.33E-02
148GO:0051607: defense response to virus3.70E-02
149GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.00E-02
150GO:0042128: nitrate assimilation4.16E-02
151GO:0010411: xyloglucan metabolic process4.32E-02
152GO:0016311: dephosphorylation4.48E-02
153GO:0009817: defense response to fungus, incompatible interaction4.65E-02
154GO:0042742: defense response to bacterium4.65E-02
155GO:0000160: phosphorelay signal transduction system4.81E-02
156GO:0010311: lateral root formation4.81E-02
RankGO TermAdjusted P value
1GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
2GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
3GO:0046863: ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity0.00E+00
4GO:0046422: violaxanthin de-epoxidase activity0.00E+00
5GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
6GO:0008887: glycerate kinase activity0.00E+00
7GO:0045550: geranylgeranyl reductase activity0.00E+00
8GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
9GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
10GO:0008465: glycerate dehydrogenase activity0.00E+00
11GO:0046408: chlorophyll synthetase activity0.00E+00
12GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
13GO:0004768: stearoyl-CoA 9-desaturase activity0.00E+00
14GO:0015142: tricarboxylic acid transmembrane transporter activity0.00E+00
15GO:0004332: fructose-bisphosphate aldolase activity1.81E-06
16GO:0018708: thiol S-methyltransferase activity4.02E-06
17GO:0004565: beta-galactosidase activity5.34E-05
18GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor5.77E-05
19GO:0009011: starch synthase activity5.77E-05
20GO:0031409: pigment binding9.16E-05
21GO:0005344: oxygen transporter activity2.97E-04
22GO:0035671: enone reductase activity2.97E-04
23GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity2.97E-04
24GO:0030794: (S)-coclaurine-N-methyltransferase activity2.97E-04
25GO:0008184: glycogen phosphorylase activity2.97E-04
26GO:0004645: phosphorylase activity2.97E-04
27GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity2.97E-04
28GO:0009374: biotin binding2.97E-04
29GO:0045485: omega-6 fatty acid desaturase activity2.97E-04
30GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity2.97E-04
31GO:0031957: very long-chain fatty acid-CoA ligase activity2.97E-04
32GO:0015168: glycerol transmembrane transporter activity2.97E-04
33GO:0008168: methyltransferase activity5.46E-04
34GO:0030234: enzyme regulator activity6.09E-04
35GO:0004617: phosphoglycerate dehydrogenase activity6.50E-04
36GO:0052832: inositol monophosphate 3-phosphatase activity6.50E-04
37GO:0033201: alpha-1,4-glucan synthase activity6.50E-04
38GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity6.50E-04
39GO:0008934: inositol monophosphate 1-phosphatase activity6.50E-04
40GO:0052833: inositol monophosphate 4-phosphatase activity6.50E-04
41GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity6.50E-04
42GO:0008883: glutamyl-tRNA reductase activity6.50E-04
43GO:0047746: chlorophyllase activity6.50E-04
44GO:0042389: omega-3 fatty acid desaturase activity6.50E-04
45GO:0010297: heteropolysaccharide binding6.50E-04
46GO:0016168: chlorophyll binding6.58E-04
47GO:0005310: dicarboxylic acid transmembrane transporter activity1.05E-03
48GO:0004373: glycogen (starch) synthase activity1.05E-03
49GO:0050734: hydroxycinnamoyltransferase activity1.05E-03
50GO:0004751: ribose-5-phosphate isomerase activity1.05E-03
51GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.05E-03
52GO:0008864: formyltetrahydrofolate deformylase activity1.05E-03
53GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.05E-03
54GO:0017077: oxidative phosphorylation uncoupler activity1.51E-03
55GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.51E-03
56GO:0016851: magnesium chelatase activity1.51E-03
57GO:0046715: borate transmembrane transporter activity1.51E-03
58GO:0004185: serine-type carboxypeptidase activity1.58E-03
59GO:0051287: NAD binding2.02E-03
60GO:0008453: alanine-glyoxylate transaminase activity2.02E-03
61GO:0015204: urea transmembrane transporter activity2.02E-03
62GO:0042802: identical protein binding2.05E-03
63GO:0045300: acyl-[acyl-carrier-protein] desaturase activity2.58E-03
64GO:0003989: acetyl-CoA carboxylase activity2.58E-03
65GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.19E-03
66GO:0004784: superoxide dismutase activity3.19E-03
67GO:0016615: malate dehydrogenase activity3.19E-03
68GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.19E-03
69GO:0048038: quinone binding3.42E-03
70GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity3.84E-03
71GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.84E-03
72GO:0102391: decanoate--CoA ligase activity3.84E-03
73GO:0030060: L-malate dehydrogenase activity3.84E-03
74GO:0016791: phosphatase activity4.15E-03
75GO:0004467: long-chain fatty acid-CoA ligase activity4.53E-03
76GO:0019843: rRNA binding4.82E-03
77GO:0008271: secondary active sulfate transmembrane transporter activity6.03E-03
78GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water6.03E-03
79GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity7.67E-03
80GO:0016844: strictosidine synthase activity7.67E-03
81GO:0050661: NADP binding9.33E-03
82GO:0047372: acylglycerol lipase activity9.46E-03
83GO:0015116: sulfate transmembrane transporter activity1.04E-02
84GO:0051537: 2 iron, 2 sulfur cluster binding1.14E-02
85GO:0004022: alcohol dehydrogenase (NAD) activity1.14E-02
86GO:0004089: carbonate dehydratase activity1.14E-02
87GO:0031072: heat shock protein binding1.14E-02
88GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.23E-02
89GO:0008266: poly(U) RNA binding1.24E-02
90GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.24E-02
91GO:0005528: FK506 binding1.56E-02
92GO:0051536: iron-sulfur cluster binding1.56E-02
93GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups1.75E-02
94GO:0003727: single-stranded RNA binding2.16E-02
95GO:0016787: hydrolase activity2.19E-02
96GO:0016491: oxidoreductase activity2.52E-02
97GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.55E-02
98GO:0016853: isomerase activity2.68E-02
99GO:0050662: coenzyme binding2.68E-02
100GO:0004872: receptor activity2.82E-02
101GO:0030170: pyridoxal phosphate binding2.83E-02
102GO:0016762: xyloglucan:xyloglucosyl transferase activity2.96E-02
103GO:0000156: phosphorelay response regulator activity3.25E-02
104GO:0016597: amino acid binding3.70E-02
105GO:0015250: water channel activity3.85E-02
106GO:0003743: translation initiation factor activity4.10E-02
107GO:0005509: calcium ion binding4.14E-02
108GO:0102483: scopolin beta-glucosidase activity4.32E-02
109GO:0016798: hydrolase activity, acting on glycosyl bonds4.32E-02
110GO:0042626: ATPase activity, coupled to transmembrane movement of substances4.46E-02
111GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.48E-02
112GO:0004222: metalloendopeptidase activity4.98E-02
RankGO TermAdjusted P value
1GO:0042579: microbody0.00E+00
2GO:0009575: chromoplast stroma0.00E+00
3GO:0009515: granal stacked thylakoid0.00E+00
4GO:0009507: chloroplast2.58E-44
5GO:0009535: chloroplast thylakoid membrane9.03E-35
6GO:0009534: chloroplast thylakoid1.58E-34
7GO:0009941: chloroplast envelope4.00E-22
8GO:0009579: thylakoid1.49E-21
9GO:0009543: chloroplast thylakoid lumen3.48E-15
10GO:0009570: chloroplast stroma1.47E-11
11GO:0031977: thylakoid lumen2.66E-11
12GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.95E-09
13GO:0010287: plastoglobule7.92E-07
14GO:0030095: chloroplast photosystem II1.79E-06
15GO:0009654: photosystem II oxygen evolving complex4.80E-06
16GO:0019898: extrinsic component of membrane2.34E-05
17GO:0048046: apoplast4.96E-05
18GO:0030076: light-harvesting complex7.75E-05
19GO:0031969: chloroplast membrane1.69E-04
20GO:0005787: signal peptidase complex2.97E-04
21GO:0009344: nitrite reductase complex [NAD(P)H]2.97E-04
22GO:0010319: stromule5.29E-04
23GO:0000427: plastid-encoded plastid RNA polymerase complex6.50E-04
24GO:0010007: magnesium chelatase complex1.05E-03
25GO:0009317: acetyl-CoA carboxylase complex1.05E-03
26GO:0009517: PSII associated light-harvesting complex II2.02E-03
27GO:0009544: chloroplast ATP synthase complex2.02E-03
28GO:0009522: photosystem I2.98E-03
29GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)3.19E-03
30GO:0009523: photosystem II3.20E-03
31GO:0009501: amyloplast5.26E-03
32GO:0031982: vesicle5.26E-03
33GO:0008180: COP9 signalosome6.83E-03
34GO:0005763: mitochondrial small ribosomal subunit6.83E-03
35GO:0005773: vacuole9.98E-03
36GO:0032040: small-subunit processome1.04E-02
37GO:0043234: protein complex1.45E-02
38GO:0042651: thylakoid membrane1.68E-02
39GO:0015935: small ribosomal subunit1.79E-02
40GO:0005777: peroxisome2.03E-02
41GO:0005618: cell wall2.93E-02
42GO:0019005: SCF ubiquitin ligase complex4.65E-02
43GO:0005840: ribosome4.97E-02
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Gene type



Gene DE type