Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G13460

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1901918: negative regulation of exoribonuclease activity0.00E+00
2GO:0033494: ferulate metabolic process0.00E+00
3GO:0090279: regulation of calcium ion import0.00E+00
4GO:0042821: pyridoxal biosynthetic process0.00E+00
5GO:0042820: vitamin B6 catabolic process0.00E+00
6GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
7GO:0015882: L-ascorbic acid transport0.00E+00
8GO:0046471: phosphatidylglycerol metabolic process0.00E+00
9GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process0.00E+00
10GO:0008298: intracellular mRNA localization0.00E+00
11GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
12GO:0071474: cellular hyperosmotic response0.00E+00
13GO:0034337: RNA folding0.00E+00
14GO:0009773: photosynthetic electron transport in photosystem I6.16E-07
15GO:1902326: positive regulation of chlorophyll biosynthetic process3.71E-06
16GO:0015979: photosynthesis2.91E-05
17GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.99E-05
18GO:0043085: positive regulation of catalytic activity3.13E-05
19GO:0009765: photosynthesis, light harvesting5.37E-05
20GO:0015995: chlorophyll biosynthetic process6.80E-05
21GO:0009854: oxidative photosynthetic carbon pathway1.69E-04
22GO:0055114: oxidation-reduction process1.98E-04
23GO:0000476: maturation of 4.5S rRNA2.84E-04
24GO:0009443: pyridoxal 5'-phosphate salvage2.84E-04
25GO:0000967: rRNA 5'-end processing2.84E-04
26GO:0046467: membrane lipid biosynthetic process2.84E-04
27GO:0015671: oxygen transport2.84E-04
28GO:0019544: arginine catabolic process to glutamate2.84E-04
29GO:0051775: response to redox state2.84E-04
30GO:0000481: maturation of 5S rRNA2.84E-04
31GO:0042371: vitamin K biosynthetic process2.84E-04
32GO:0071461: cellular response to redox state2.84E-04
33GO:0080093: regulation of photorespiration2.84E-04
34GO:0031998: regulation of fatty acid beta-oxidation2.84E-04
35GO:0010028: xanthophyll cycle2.84E-04
36GO:0019252: starch biosynthetic process3.21E-04
37GO:0005975: carbohydrate metabolic process3.34E-04
38GO:0009657: plastid organization3.44E-04
39GO:0071482: cellular response to light stimulus3.44E-04
40GO:0005982: starch metabolic process4.91E-04
41GO:0051645: Golgi localization6.25E-04
42GO:0080005: photosystem stoichiometry adjustment6.25E-04
43GO:0010541: acropetal auxin transport6.25E-04
44GO:0060151: peroxisome localization6.25E-04
45GO:0071457: cellular response to ozone6.25E-04
46GO:0051262: protein tetramerization6.25E-04
47GO:0034470: ncRNA processing6.25E-04
48GO:0018298: protein-chromophore linkage7.94E-04
49GO:0030048: actin filament-based movement8.57E-04
50GO:0006108: malate metabolic process8.57E-04
51GO:0048467: gynoecium development9.62E-04
52GO:0010143: cutin biosynthetic process9.62E-04
53GO:0010207: photosystem II assembly9.62E-04
54GO:0090391: granum assembly1.01E-03
55GO:0090436: leaf pavement cell development1.01E-03
56GO:0051646: mitochondrion localization1.01E-03
57GO:0010160: formation of animal organ boundary1.01E-03
58GO:0015940: pantothenate biosynthetic process1.01E-03
59GO:0005977: glycogen metabolic process1.01E-03
60GO:0009853: photorespiration1.06E-03
61GO:0034599: cellular response to oxidative stress1.13E-03
62GO:0009052: pentose-phosphate shunt, non-oxidative branch1.45E-03
63GO:0043481: anthocyanin accumulation in tissues in response to UV light1.45E-03
64GO:0010731: protein glutathionylation1.45E-03
65GO:2001141: regulation of RNA biosynthetic process1.45E-03
66GO:0071484: cellular response to light intensity1.45E-03
67GO:0009152: purine ribonucleotide biosynthetic process1.45E-03
68GO:0046653: tetrahydrofolate metabolic process1.45E-03
69GO:0006107: oxaloacetate metabolic process1.45E-03
70GO:0010114: response to red light1.46E-03
71GO:2000122: negative regulation of stomatal complex development1.94E-03
72GO:0015994: chlorophyll metabolic process1.94E-03
73GO:0006546: glycine catabolic process1.94E-03
74GO:0006021: inositol biosynthetic process1.94E-03
75GO:0006734: NADH metabolic process1.94E-03
76GO:0010021: amylopectin biosynthetic process1.94E-03
77GO:0010037: response to carbon dioxide1.94E-03
78GO:0015976: carbon utilization1.94E-03
79GO:0071486: cellular response to high light intensity1.94E-03
80GO:0015689: molybdate ion transport1.94E-03
81GO:0006109: regulation of carbohydrate metabolic process1.94E-03
82GO:0006465: signal peptide processing2.48E-03
83GO:0071493: cellular response to UV-B2.48E-03
84GO:0006564: L-serine biosynthetic process2.48E-03
85GO:0043097: pyrimidine nucleoside salvage2.48E-03
86GO:0006097: glyoxylate cycle2.48E-03
87GO:0009958: positive gravitropism2.61E-03
88GO:0006662: glycerol ether metabolic process2.61E-03
89GO:0060918: auxin transport3.06E-03
90GO:0010190: cytochrome b6f complex assembly3.06E-03
91GO:0006206: pyrimidine nucleobase metabolic process3.06E-03
92GO:0009228: thiamine biosynthetic process3.06E-03
93GO:0046855: inositol phosphate dephosphorylation3.06E-03
94GO:0050665: hydrogen peroxide biosynthetic process3.06E-03
95GO:0042549: photosystem II stabilization3.06E-03
96GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.06E-03
97GO:0006810: transport3.12E-03
98GO:0080167: response to karrikin3.49E-03
99GO:0009735: response to cytokinin3.55E-03
100GO:1901259: chloroplast rRNA processing3.68E-03
101GO:0010019: chloroplast-nucleus signaling pathway3.68E-03
102GO:0071333: cellular response to glucose stimulus3.68E-03
103GO:1900056: negative regulation of leaf senescence4.34E-03
104GO:0009645: response to low light intensity stimulus4.34E-03
105GO:0009769: photosynthesis, light harvesting in photosystem II4.34E-03
106GO:0009772: photosynthetic electron transport in photosystem II4.34E-03
107GO:0009058: biosynthetic process4.76E-03
108GO:0009642: response to light intensity5.03E-03
109GO:0010078: maintenance of root meristem identity5.03E-03
110GO:0032508: DNA duplex unwinding5.03E-03
111GO:0016559: peroxisome fission5.03E-03
112GO:0019430: removal of superoxide radicals5.77E-03
113GO:0010204: defense response signaling pathway, resistance gene-independent5.77E-03
114GO:0043562: cellular response to nitrogen levels5.77E-03
115GO:0017004: cytochrome complex assembly5.77E-03
116GO:0009821: alkaloid biosynthetic process6.54E-03
117GO:0006098: pentose-phosphate shunt6.54E-03
118GO:0019432: triglyceride biosynthetic process6.54E-03
119GO:0006783: heme biosynthetic process6.54E-03
120GO:0098656: anion transmembrane transport6.54E-03
121GO:0010218: response to far red light6.68E-03
122GO:0048527: lateral root development7.01E-03
123GO:0010380: regulation of chlorophyll biosynthetic process7.35E-03
124GO:0071577: zinc II ion transmembrane transport7.35E-03
125GO:0006779: porphyrin-containing compound biosynthetic process7.35E-03
126GO:0009637: response to blue light7.68E-03
127GO:0009409: response to cold8.04E-03
128GO:0006099: tricarboxylic acid cycle8.04E-03
129GO:0006782: protoporphyrinogen IX biosynthetic process8.19E-03
130GO:0006949: syncytium formation8.19E-03
131GO:0019684: photosynthesis, light reaction9.06E-03
132GO:0009089: lysine biosynthetic process via diaminopimelate9.06E-03
133GO:0006352: DNA-templated transcription, initiation9.06E-03
134GO:0018119: peptidyl-cysteine S-nitrosylation9.06E-03
135GO:0009684: indoleacetic acid biosynthetic process9.06E-03
136GO:0016024: CDP-diacylglycerol biosynthetic process9.96E-03
137GO:0008361: regulation of cell size9.96E-03
138GO:0006790: sulfur compound metabolic process9.96E-03
139GO:0010588: cotyledon vascular tissue pattern formation1.09E-02
140GO:0006094: gluconeogenesis1.09E-02
141GO:0009767: photosynthetic electron transport chain1.09E-02
142GO:0009658: chloroplast organization1.17E-02
143GO:0010020: chloroplast fission1.19E-02
144GO:0019253: reductive pentose-phosphate cycle1.19E-02
145GO:0010540: basipetal auxin transport1.19E-02
146GO:0019853: L-ascorbic acid biosynthetic process1.29E-02
147GO:0046854: phosphatidylinositol phosphorylation1.29E-02
148GO:0051603: proteolysis involved in cellular protein catabolic process1.39E-02
149GO:0006636: unsaturated fatty acid biosynthetic process1.39E-02
150GO:0009833: plant-type primary cell wall biogenesis1.39E-02
151GO:0009416: response to light stimulus1.51E-02
152GO:0009768: photosynthesis, light harvesting in photosystem I1.60E-02
153GO:0007017: microtubule-based process1.60E-02
154GO:0048367: shoot system development1.64E-02
155GO:0019915: lipid storage1.72E-02
156GO:0061077: chaperone-mediated protein folding1.72E-02
157GO:0009269: response to desiccation1.72E-02
158GO:0016114: terpenoid biosynthetic process1.72E-02
159GO:0016226: iron-sulfur cluster assembly1.83E-02
160GO:0030433: ubiquitin-dependent ERAD pathway1.83E-02
161GO:0019748: secondary metabolic process1.83E-02
162GO:0030245: cellulose catabolic process1.83E-02
163GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.95E-02
164GO:0071215: cellular response to abscisic acid stimulus1.95E-02
165GO:0009686: gibberellin biosynthetic process1.95E-02
166GO:0048443: stamen development2.07E-02
167GO:0009306: protein secretion2.07E-02
168GO:0016117: carotenoid biosynthetic process2.19E-02
169GO:0042631: cellular response to water deprivation2.31E-02
170GO:0080022: primary root development2.31E-02
171GO:0010087: phloem or xylem histogenesis2.31E-02
172GO:0010118: stomatal movement2.31E-02
173GO:0006520: cellular amino acid metabolic process2.44E-02
174GO:0071472: cellular response to salt stress2.44E-02
175GO:0010154: fruit development2.44E-02
176GO:0010268: brassinosteroid homeostasis2.44E-02
177GO:0016310: phosphorylation2.51E-02
178GO:0015986: ATP synthesis coupled proton transport2.57E-02
179GO:0009791: post-embryonic development2.70E-02
180GO:0048825: cotyledon development2.70E-02
181GO:0009851: auxin biosynthetic process2.70E-02
182GO:0016132: brassinosteroid biosynthetic process2.83E-02
183GO:0032502: developmental process2.97E-02
184GO:0010090: trichome morphogenesis3.11E-02
185GO:1901657: glycosyl compound metabolic process3.11E-02
186GO:0009639: response to red or far red light3.25E-02
187GO:0009828: plant-type cell wall loosening3.25E-02
188GO:0016125: sterol metabolic process3.25E-02
189GO:0009627: systemic acquired resistance3.98E-02
190GO:0042128: nitrate assimilation3.98E-02
191GO:0042742: defense response to bacterium4.25E-02
192GO:0016311: dephosphorylation4.29E-02
193GO:0016049: cell growth4.29E-02
194GO:0009817: defense response to fungus, incompatible interaction4.45E-02
195GO:0030244: cellulose biosynthetic process4.45E-02
196GO:0009813: flavonoid biosynthetic process4.60E-02
197GO:0010119: regulation of stomatal movement4.93E-02
198GO:0009910: negative regulation of flower development4.93E-02
RankGO TermAdjusted P value
1GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
2GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
3GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
4GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity0.00E+00
5GO:0008974: phosphoribulokinase activity0.00E+00
6GO:0015229: L-ascorbic acid transporter activity0.00E+00
7GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
8GO:0008465: glycerate dehydrogenase activity0.00E+00
9GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
10GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
11GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
12GO:0019899: enzyme binding4.56E-06
13GO:0042802: identical protein binding5.34E-05
14GO:0009011: starch synthase activity5.37E-05
15GO:0043495: protein anchor5.37E-05
16GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor5.37E-05
17GO:0016615: malate dehydrogenase activity1.23E-04
18GO:0030060: L-malate dehydrogenase activity1.69E-04
19GO:0051777: ent-kaurenoate oxidase activity2.84E-04
20GO:0004856: xylulokinase activity2.84E-04
21GO:0008746: NAD(P)+ transhydrogenase activity2.84E-04
22GO:0010347: L-galactose-1-phosphate phosphatase activity2.84E-04
23GO:0005344: oxygen transporter activity2.84E-04
24GO:0046906: tetrapyrrole binding2.84E-04
25GO:0005227: calcium activated cation channel activity2.84E-04
26GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity2.84E-04
27GO:0008047: enzyme activator activity5.73E-04
28GO:0016168: chlorophyll binding6.09E-04
29GO:0080097: L-tryptophan:pyruvate aminotransferase activity6.25E-04
30GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity6.25E-04
31GO:0008934: inositol monophosphate 1-phosphatase activity6.25E-04
32GO:0019156: isoamylase activity6.25E-04
33GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase6.25E-04
34GO:0052833: inositol monophosphate 4-phosphatase activity6.25E-04
35GO:0008883: glutamyl-tRNA reductase activity6.25E-04
36GO:0047746: chlorophyllase activity6.25E-04
37GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity6.25E-04
38GO:0004617: phosphoglycerate dehydrogenase activity6.25E-04
39GO:0004047: aminomethyltransferase activity6.25E-04
40GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity6.25E-04
41GO:0052832: inositol monophosphate 3-phosphatase activity6.25E-04
42GO:0033201: alpha-1,4-glucan synthase activity6.25E-04
43GO:0003774: motor activity9.62E-04
44GO:0004373: glycogen (starch) synthase activity1.01E-03
45GO:0050734: hydroxycinnamoyltransferase activity1.01E-03
46GO:0004751: ribose-5-phosphate isomerase activity1.01E-03
47GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.01E-03
48GO:0070402: NADPH binding1.01E-03
49GO:0008864: formyltetrahydrofolate deformylase activity1.01E-03
50GO:0005528: FK506 binding1.32E-03
51GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity1.45E-03
52GO:0016851: magnesium chelatase activity1.45E-03
53GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity1.45E-03
54GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity1.45E-03
55GO:0004185: serine-type carboxypeptidase activity1.46E-03
56GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.78E-03
57GO:0022891: substrate-specific transmembrane transporter activity1.91E-03
58GO:0008453: alanine-glyoxylate transaminase activity1.94E-03
59GO:0004045: aminoacyl-tRNA hydrolase activity1.94E-03
60GO:0016987: sigma factor activity1.94E-03
61GO:0045430: chalcone isomerase activity1.94E-03
62GO:0015098: molybdate ion transmembrane transporter activity1.94E-03
63GO:0008891: glycolate oxidase activity1.94E-03
64GO:0001053: plastid sigma factor activity1.94E-03
65GO:0047134: protein-disulfide reductase activity2.24E-03
66GO:0016846: carbon-sulfur lyase activity2.48E-03
67GO:0016773: phosphotransferase activity, alcohol group as acceptor2.48E-03
68GO:0004791: thioredoxin-disulfide reductase activity2.80E-03
69GO:0004556: alpha-amylase activity3.06E-03
70GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.06E-03
71GO:0004784: superoxide dismutase activity3.06E-03
72GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.06E-03
73GO:2001070: starch binding3.06E-03
74GO:0004332: fructose-bisphosphate aldolase activity3.06E-03
75GO:0048038: quinone binding3.22E-03
76GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.66E-03
77GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity3.68E-03
78GO:0004849: uridine kinase activity3.68E-03
79GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.68E-03
80GO:0005261: cation channel activity3.68E-03
81GO:0004033: aldo-keto reductase (NADP) activity5.03E-03
82GO:0016844: strictosidine synthase activity7.35E-03
83GO:0016491: oxidoreductase activity7.62E-03
84GO:0003993: acid phosphatase activity8.04E-03
85GO:0047372: acylglycerol lipase activity9.06E-03
86GO:0003725: double-stranded RNA binding1.09E-02
87GO:0004565: beta-galactosidase activity1.09E-02
88GO:0004022: alcohol dehydrogenase (NAD) activity1.09E-02
89GO:0010329: auxin efflux transmembrane transporter activity1.09E-02
90GO:0005315: inorganic phosphate transmembrane transporter activity1.09E-02
91GO:0004089: carbonate dehydratase activity1.09E-02
92GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.19E-02
93GO:0008266: poly(U) RNA binding1.19E-02
94GO:0016788: hydrolase activity, acting on ester bonds1.20E-02
95GO:0051287: NAD binding1.20E-02
96GO:0031409: pigment binding1.39E-02
97GO:0051536: iron-sulfur cluster binding1.50E-02
98GO:0005385: zinc ion transmembrane transporter activity1.50E-02
99GO:0004857: enzyme inhibitor activity1.50E-02
100GO:0008324: cation transmembrane transporter activity1.60E-02
101GO:0008810: cellulase activity1.95E-02
102GO:0016760: cellulose synthase (UDP-forming) activity1.95E-02
103GO:0015035: protein disulfide oxidoreductase activity1.97E-02
104GO:0003727: single-stranded RNA binding2.07E-02
105GO:0008514: organic anion transmembrane transporter activity2.07E-02
106GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.28E-02
107GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.44E-02
108GO:0010181: FMN binding2.57E-02
109GO:0016791: phosphatase activity3.25E-02
110GO:0016759: cellulose synthase activity3.25E-02
111GO:0008483: transaminase activity3.39E-02
112GO:0016722: oxidoreductase activity, oxidizing metal ions3.39E-02
113GO:0005200: structural constituent of cytoskeleton3.39E-02
114GO:0016597: amino acid binding3.54E-02
115GO:0102483: scopolin beta-glucosidase activity4.13E-02
116GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.93E-02
RankGO TermAdjusted P value
1GO:0042579: microbody0.00E+00
2GO:0009507: chloroplast1.81E-30
3GO:0009535: chloroplast thylakoid membrane1.55E-13
4GO:0009570: chloroplast stroma1.01E-12
5GO:0009941: chloroplast envelope1.34E-10
6GO:0009534: chloroplast thylakoid2.11E-08
7GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.90E-07
8GO:0009543: chloroplast thylakoid lumen7.72E-07
9GO:0009579: thylakoid1.95E-06
10GO:0009523: photosystem II2.07E-05
11GO:0042651: thylakoid membrane1.14E-04
12GO:0031969: chloroplast membrane1.46E-04
13GO:0005787: signal peptidase complex2.84E-04
14GO:0009344: nitrite reductase complex [NAD(P)H]2.84E-04
15GO:0048046: apoplast4.40E-04
16GO:0010319: stromule4.89E-04
17GO:0016459: myosin complex5.73E-04
18GO:0043036: starch grain6.25E-04
19GO:0032040: small-subunit processome7.56E-04
20GO:0033281: TAT protein transport complex1.01E-03
21GO:0010007: magnesium chelatase complex1.01E-03
22GO:0031977: thylakoid lumen1.32E-03
23GO:0005777: peroxisome1.44E-03
24GO:0009654: photosystem II oxygen evolving complex1.45E-03
25GO:0009517: PSII associated light-harvesting complex II1.94E-03
26GO:0009522: photosystem I2.80E-03
27GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)3.06E-03
28GO:0005618: cell wall4.08E-03
29GO:0010287: plastoglobule4.16E-03
30GO:0009501: amyloplast5.03E-03
31GO:0009539: photosystem II reaction center5.77E-03
32GO:0045298: tubulin complex6.54E-03
33GO:0005773: vacuole8.53E-03
34GO:0030095: chloroplast photosystem II1.19E-02
35GO:0030076: light-harvesting complex1.29E-02
36GO:0043234: protein complex1.39E-02
37GO:0005623: cell2.46E-02
38GO:0019898: extrinsic component of membrane2.70E-02
39GO:0030529: intracellular ribonucleoprotein complex3.68E-02
40GO:0009707: chloroplast outer membrane4.45E-02
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Gene type



Gene DE type