co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G13140

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042820: vitamin B6 catabolic process	0.00E+00
2	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
3	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
4	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
5	GO:0002184: cytoplasmic translational termination	0.00E+00
6	GO:0030155: regulation of cell adhesion	0.00E+00
7	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
8	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
9	GO:0042821: pyridoxal biosynthetic process	0.00E+00
10	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
11	GO:0015979: photosynthesis	3.07E-10
12	GO:0032544: plastid translation	4.61E-10
13	GO:0015995: chlorophyll biosynthetic process	5.93E-08
14	GO:1902326: positive regulation of chlorophyll biosynthetic process	2.70E-06
15	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.23E-05
16	GO:0010027: thylakoid membrane organization	3.13E-05
17	GO:0010236: plastoquinone biosynthetic process	6.46E-05
18	GO:0042371: vitamin K biosynthetic process	2.41E-04
19	GO:0005991: trehalose metabolic process	2.41E-04
20	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	2.41E-04
21	GO:0009443: pyridoxal 5'-phosphate salvage	2.41E-04
22	GO:0071482: cellular response to light stimulus	2.70E-04
23	GO:0043085: positive regulation of catalytic activity	5.25E-04
24	GO:0019684: photosynthesis, light reaction	5.25E-04
25	GO:0010275: NAD(P)H dehydrogenase complex assembly	5.34E-04
26	GO:0006810: transport	5.57E-04
27	GO:0016024: CDP-diacylglycerol biosynthetic process	6.01E-04
28	GO:0006412: translation	6.24E-04
29	GO:0009767: photosynthetic electron transport chain	6.81E-04
30	GO:0048281: inflorescence morphogenesis	8.68E-04
31	GO:0007017: microtubule-based process	1.16E-03
32	GO:0010731: protein glutathionylation	1.24E-03
33	GO:0046739: transport of virus in multicellular host	1.24E-03
34	GO:0006986: response to unfolded protein	1.24E-03
35	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.24E-03
36	GO:2001141: regulation of RNA biosynthetic process	1.24E-03
37	GO:0051085: chaperone mediated protein folding requiring cofactor	1.24E-03
38	GO:0010148: transpiration	1.24E-03
39	GO:0009664: plant-type cell wall organization	1.44E-03
40	GO:0006546: glycine catabolic process	1.65E-03
41	GO:0019464: glycine decarboxylation via glycine cleavage system	1.65E-03
42	GO:0009765: photosynthesis, light harvesting	1.65E-03
43	GO:0006109: regulation of carbohydrate metabolic process	1.65E-03
44	GO:0022622: root system development	1.65E-03
45	GO:0051603: proteolysis involved in cellular protein catabolic process	1.65E-03
46	GO:2000122: negative regulation of stomatal complex development	1.65E-03
47	GO:0006564: L-serine biosynthetic process	2.11E-03
48	GO:0009107: lipoate biosynthetic process	2.11E-03
49	GO:0010375: stomatal complex patterning	2.11E-03
50	GO:0000304: response to singlet oxygen	2.11E-03
51	GO:0010190: cytochrome b6f complex assembly	2.60E-03
52	GO:0006751: glutathione catabolic process	2.60E-03
53	GO:0032973: amino acid export	2.60E-03
54	GO:0006655: phosphatidylglycerol biosynthetic process	2.60E-03
55	GO:0000741: karyogamy	2.60E-03
56	GO:0009742: brassinosteroid mediated signaling pathway	2.66E-03
57	GO:0009828: plant-type cell wall loosening	3.07E-03
58	GO:0042372: phylloquinone biosynthetic process	3.12E-03
59	GO:0010189: vitamin E biosynthetic process	3.12E-03
60	GO:0010019: chloroplast-nucleus signaling pathway	3.12E-03
61	GO:0080086: stamen filament development	3.12E-03
62	GO:0009955: adaxial/abaxial pattern specification	3.12E-03
63	GO:1901259: chloroplast rRNA processing	3.12E-03
64	GO:0070370: cellular heat acclimation	3.68E-03
65	GO:0010444: guard mother cell differentiation	3.68E-03
66	GO:0010103: stomatal complex morphogenesis	3.68E-03
67	GO:0032880: regulation of protein localization	3.68E-03
68	GO:0010374: stomatal complex development	3.68E-03
69	GO:0009772: photosynthetic electron transport in photosystem II	3.68E-03
70	GO:0043090: amino acid import	3.68E-03
71	GO:0006605: protein targeting	4.27E-03
72	GO:0007155: cell adhesion	4.27E-03
73	GO:0048564: photosystem I assembly	4.27E-03
74	GO:0046620: regulation of organ growth	4.27E-03
75	GO:0070413: trehalose metabolism in response to stress	4.27E-03
76	GO:0018298: protein-chromophore linkage	4.77E-03
77	GO:0009817: defense response to fungus, incompatible interaction	4.77E-03
78	GO:0010052: guard cell differentiation	4.89E-03
79	GO:0017004: cytochrome complex assembly	4.89E-03
80	GO:0010497: plasmodesmata-mediated intercellular transport	4.89E-03
81	GO:0009657: plastid organization	4.89E-03
82	GO:0001558: regulation of cell growth	4.89E-03
83	GO:0045490: pectin catabolic process	4.94E-03
84	GO:0080144: amino acid homeostasis	5.54E-03
85	GO:0046916: cellular transition metal ion homeostasis	5.54E-03
86	GO:0006779: porphyrin-containing compound biosynthetic process	6.21E-03
87	GO:0045036: protein targeting to chloroplast	6.92E-03
88	GO:0009641: shade avoidance	6.92E-03
89	GO:0006949: syncytium formation	6.92E-03
90	GO:0006782: protoporphyrinogen IX biosynthetic process	6.92E-03
91	GO:0009089: lysine biosynthetic process via diaminopimelate	7.65E-03
92	GO:0006352: DNA-templated transcription, initiation	7.65E-03
93	GO:0009773: photosynthetic electron transport in photosystem I	7.65E-03
94	GO:0006415: translational termination	7.65E-03
95	GO:0010114: response to red light	7.79E-03
96	GO:0009658: chloroplast organization	8.61E-03
97	GO:0050826: response to freezing	9.20E-03
98	GO:2000012: regulation of auxin polar transport	9.20E-03
99	GO:0010143: cutin biosynthetic process	1.00E-02
100	GO:0010030: positive regulation of seed germination	1.09E-02
101	GO:0005992: trehalose biosynthetic process	1.26E-02
102	GO:0009944: polarity specification of adaxial/abaxial axis	1.26E-02
103	GO:0051302: regulation of cell division	1.35E-02
104	GO:0031408: oxylipin biosynthetic process	1.45E-02
105	GO:0019915: lipid storage	1.45E-02
106	GO:0061077: chaperone-mediated protein folding	1.45E-02
107	GO:0006730: one-carbon metabolic process	1.54E-02
108	GO:0030245: cellulose catabolic process	1.54E-02
109	GO:0009409: response to cold	1.57E-02
110	GO:0001944: vasculature development	1.64E-02
111	GO:0009686: gibberellin biosynthetic process	1.64E-02
112	GO:0009306: protein secretion	1.74E-02
113	GO:0019722: calcium-mediated signaling	1.74E-02
114	GO:0009561: megagametogenesis	1.74E-02
115	GO:0008284: positive regulation of cell proliferation	1.84E-02
116	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.84E-02
117	GO:0000413: protein peptidyl-prolyl isomerization	1.95E-02
118	GO:0042631: cellular response to water deprivation	1.95E-02
119	GO:0006397: mRNA processing	1.96E-02
120	GO:0006662: glycerol ether metabolic process	2.05E-02
121	GO:0010197: polar nucleus fusion	2.05E-02
122	GO:0010182: sugar mediated signaling pathway	2.05E-02
123	GO:0010268: brassinosteroid homeostasis	2.05E-02
124	GO:0009958: positive gravitropism	2.05E-02
125	GO:0048544: recognition of pollen	2.16E-02
126	GO:0009790: embryo development	2.20E-02
127	GO:0016132: brassinosteroid biosynthetic process	2.38E-02
128	GO:0055114: oxidation-reduction process	2.48E-02
129	GO:0040008: regulation of growth	2.48E-02
130	GO:0032502: developmental process	2.50E-02
131	GO:0016125: sterol metabolic process	2.73E-02
132	GO:0007267: cell-cell signaling	2.85E-02
133	GO:0009627: systemic acquired resistance	3.35E-02
134	GO:0009735: response to cytokinin	3.40E-02
135	GO:0009826: unidimensional cell growth	3.87E-02
136	GO:0009832: plant-type cell wall biogenesis	3.88E-02
137	GO:0009813: flavonoid biosynthetic process	3.88E-02
138	GO:0009407: toxin catabolic process	4.01E-02
139	GO:0042254: ribosome biogenesis	4.09E-02
140	GO:0048527: lateral root development	4.15E-02
141	GO:0010119: regulation of stomatal movement	4.15E-02
142	GO:0045087: innate immune response	4.43E-02
143	GO:0009853: photorespiration	4.43E-02
144	GO:0034599: cellular response to oxidative stress	4.57E-02
145	GO:0030001: metal ion transport	4.86E-02
146	GO:0006839: mitochondrial transport	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
2	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
3	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
4	GO:0019843: rRNA binding	3.35E-07
5	GO:0019899: enzyme binding	3.00E-06
6	GO:0016851: magnesium chelatase activity	2.23E-05
7	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	4.05E-05
8	GO:0043495: protein anchor	4.05E-05
9	GO:0030570: pectate lyase activity	1.21E-04
10	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.30E-04
11	GO:0005509: calcium ion binding	1.65E-04
12	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.72E-04
13	GO:0004033: aldo-keto reductase (NADP) activity	2.19E-04
14	GO:0009374: biotin binding	2.41E-04
15	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	2.41E-04
16	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	2.41E-04
17	GO:0046906: tetrapyrrole binding	2.41E-04
18	GO:0051777: ent-kaurenoate oxidase activity	2.41E-04
19	GO:0003735: structural constituent of ribosome	3.60E-04
20	GO:0016630: protochlorophyllide reductase activity	5.34E-04
21	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	5.34E-04
22	GO:0003839: gamma-glutamylcyclotransferase activity	5.34E-04
23	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	5.34E-04
24	GO:0004617: phosphoglycerate dehydrogenase activity	5.34E-04
25	GO:0004047: aminomethyltransferase activity	5.34E-04
26	GO:0031072: heat shock protein binding	6.81E-04
27	GO:0008266: poly(U) RNA binding	7.67E-04
28	GO:0005504: fatty acid binding	8.68E-04
29	GO:0045174: glutathione dehydrogenase (ascorbate) activity	8.68E-04
30	GO:0070402: NADPH binding	8.68E-04
31	GO:0016992: lipoate synthase activity	8.68E-04
32	GO:0005528: FK506 binding	1.05E-03
33	GO:0004185: serine-type carboxypeptidase activity	1.09E-03
34	GO:0016149: translation release factor activity, codon specific	1.24E-03
35	GO:0043023: ribosomal large subunit binding	1.24E-03
36	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	1.24E-03
37	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.24E-03
38	GO:0022891: substrate-specific transmembrane transporter activity	1.51E-03
39	GO:0045430: chalcone isomerase activity	1.65E-03
40	GO:0042277: peptide binding	1.65E-03
41	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.65E-03
42	GO:0004659: prenyltransferase activity	1.65E-03
43	GO:0001053: plastid sigma factor activity	1.65E-03
44	GO:0004045: aminoacyl-tRNA hydrolase activity	1.65E-03
45	GO:0016987: sigma factor activity	1.65E-03
46	GO:0019199: transmembrane receptor protein kinase activity	1.65E-03
47	GO:0003959: NADPH dehydrogenase activity	2.11E-03
48	GO:0003989: acetyl-CoA carboxylase activity	2.11E-03
49	GO:0051082: unfolded protein binding	2.47E-03
50	GO:0048038: quinone binding	2.54E-03
51	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.60E-03
52	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.60E-03
53	GO:0016791: phosphatase activity	3.07E-03
54	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	3.12E-03
55	GO:0005200: structural constituent of cytoskeleton	3.26E-03
56	GO:0008483: transaminase activity	3.26E-03
57	GO:0016597: amino acid binding	3.46E-03
58	GO:0016829: lyase activity	3.63E-03
59	GO:0016168: chlorophyll binding	3.87E-03
60	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.77E-03
61	GO:0046914: transition metal ion binding	4.89E-03
62	GO:0003747: translation release factor activity	5.54E-03
63	GO:0042802: identical protein binding	6.70E-03
64	GO:0008047: enzyme activator activity	6.92E-03
65	GO:0004364: glutathione transferase activity	7.48E-03
66	GO:0047372: acylglycerol lipase activity	7.65E-03
67	GO:0008378: galactosyltransferase activity	8.41E-03
68	GO:0035091: phosphatidylinositol binding	8.43E-03
69	GO:0008083: growth factor activity	1.00E-02
70	GO:0004857: enzyme inhibitor activity	1.26E-02
71	GO:0051087: chaperone binding	1.35E-02
72	GO:0043424: protein histidine kinase binding	1.35E-02
73	GO:0016746: transferase activity, transferring acyl groups	1.55E-02
74	GO:0008810: cellulase activity	1.64E-02
75	GO:0003727: single-stranded RNA binding	1.74E-02
76	GO:0047134: protein-disulfide reductase activity	1.84E-02
77	GO:0003924: GTPase activity	1.86E-02
78	GO:0004791: thioredoxin-disulfide reductase activity	2.16E-02
79	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.62E-02
80	GO:0016722: oxidoreductase activity, oxidizing metal ions	2.85E-02
81	GO:0004721: phosphoprotein phosphatase activity	3.48E-02
82	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.61E-02
83	GO:0008168: methyltransferase activity	3.87E-02
84	GO:0046872: metal ion binding	4.13E-02
85	GO:0016491: oxidoreductase activity	4.46E-02
86	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0009344: nitrite reductase complex [NAD(P)H]	0.00E+00
2	GO:0009507: chloroplast	7.67E-32
3	GO:0009570: chloroplast stroma	2.58E-24
4	GO:0009535: chloroplast thylakoid membrane	1.75E-21
5	GO:0009579: thylakoid	6.98E-19
6	GO:0009543: chloroplast thylakoid lumen	4.85E-16
7	GO:0009941: chloroplast envelope	1.80E-15
8	GO:0009654: photosystem II oxygen evolving complex	6.19E-14
9	GO:0009534: chloroplast thylakoid	1.91E-12
10	GO:0019898: extrinsic component of membrane	1.38E-10
11	GO:0031977: thylakoid lumen	1.01E-08
12	GO:0030095: chloroplast photosystem II	9.18E-07
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	9.29E-06
14	GO:0010007: magnesium chelatase complex	9.82E-06
15	GO:0005840: ribosome	4.96E-05
16	GO:0031969: chloroplast membrane	8.20E-05
17	GO:0009547: plastid ribosome	2.41E-04
18	GO:0009317: acetyl-CoA carboxylase complex	8.68E-04
19	GO:0042651: thylakoid membrane	1.16E-03
20	GO:0005960: glycine cleavage complex	1.24E-03
21	GO:0015630: microtubule cytoskeleton	1.24E-03
22	GO:0009523: photosystem II	2.37E-03
23	GO:0010319: stromule	3.26E-03
24	GO:0030529: intracellular ribonucleoprotein complex	3.66E-03
25	GO:0009533: chloroplast stromal thylakoid	3.68E-03
26	GO:0009536: plastid	4.12E-03
27	GO:0009539: photosystem II reaction center	4.89E-03
28	GO:0005763: mitochondrial small ribosomal subunit	5.54E-03
29	GO:0045298: tubulin complex	5.54E-03
30	GO:0005615: extracellular space	5.70E-03
31	GO:0005618: cell wall	5.93E-03
32	GO:0016020: membrane	6.32E-03
33	GO:0000311: plastid large ribosomal subunit	8.41E-03
34	GO:0009508: plastid chromosome	9.20E-03
35	GO:0000312: plastid small ribosomal subunit	1.00E-02
36	GO:0043234: protein complex	1.17E-02
37	GO:0048046: apoplast	1.30E-02
38	GO:0009505: plant-type cell wall	1.38E-02
39	GO:0009522: photosystem I	2.16E-02
40	GO:0005576: extracellular region	2.17E-02
41	GO:0009295: nucleoid	2.85E-02
42	GO:0009707: chloroplast outer membrane	3.75E-02
43	GO:0005874: microtubule	4.80E-02