co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G12900

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046486: glycerolipid metabolic process	0.00E+00
2	GO:0006907: pinocytosis	0.00E+00
3	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
4	GO:0019685: photosynthesis, dark reaction	0.00E+00
5	GO:0044154: histone H3-K14 acetylation	0.00E+00
6	GO:0045014: negative regulation of transcription by glucose	0.00E+00
7	GO:0070455: positive regulation of heme biosynthetic process	0.00E+00
8	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
9	GO:0045176: apical protein localization	0.00E+00
10	GO:0043972: histone H3-K23 acetylation	0.00E+00
11	GO:0080127: fruit septum development	0.00E+00
12	GO:0043087: regulation of GTPase activity	4.37E-04
13	GO:0051013: microtubule severing	4.37E-04
14	GO:0034757: negative regulation of iron ion transport	4.37E-04
15	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	4.37E-04
16	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	4.37E-04
17	GO:0043971: histone H3-K18 acetylation	4.37E-04
18	GO:0019478: D-amino acid catabolic process	4.37E-04
19	GO:0010070: zygote asymmetric cell division	4.37E-04
20	GO:0009958: positive gravitropism	6.04E-04
21	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	6.23E-04
22	GO:0007186: G-protein coupled receptor signaling pathway	6.43E-04
23	GO:0010583: response to cyclopentenone	8.59E-04
24	GO:0001736: establishment of planar polarity	9.44E-04
25	GO:0043039: tRNA aminoacylation	9.44E-04
26	GO:0010069: zygote asymmetric cytokinesis in embryo sac	9.44E-04
27	GO:0080175: phragmoplast microtubule organization	9.44E-04
28	GO:0006650: glycerophospholipid metabolic process	9.44E-04
29	GO:0010271: regulation of chlorophyll catabolic process	9.44E-04
30	GO:0048829: root cap development	1.06E-03
31	GO:0009416: response to light stimulus	1.18E-03
32	GO:0010582: floral meristem determinacy	1.39E-03
33	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	1.54E-03
34	GO:0046168: glycerol-3-phosphate catabolic process	1.54E-03
35	GO:0080117: secondary growth	1.54E-03
36	GO:0042780: tRNA 3'-end processing	1.54E-03
37	GO:0010540: basipetal auxin transport	1.78E-03
38	GO:0000160: phosphorelay signal transduction system	1.87E-03
39	GO:0009825: multidimensional cell growth	2.00E-03
40	GO:0080188: RNA-directed DNA methylation	2.00E-03
41	GO:2001141: regulation of RNA biosynthetic process	2.22E-03
42	GO:0045017: glycerolipid biosynthetic process	2.22E-03
43	GO:0051639: actin filament network formation	2.22E-03
44	GO:0034059: response to anoxia	2.22E-03
45	GO:0006072: glycerol-3-phosphate metabolic process	2.22E-03
46	GO:0009800: cinnamic acid biosynthetic process	2.22E-03
47	GO:0033014: tetrapyrrole biosynthetic process	2.22E-03
48	GO:0009734: auxin-activated signaling pathway	2.49E-03
49	GO:0009956: radial pattern formation	2.99E-03
50	GO:0051764: actin crosslink formation	2.99E-03
51	GO:0015846: polyamine transport	2.99E-03
52	GO:0006021: inositol biosynthetic process	2.99E-03
53	GO:0003333: amino acid transmembrane transport	3.00E-03
54	GO:0009926: auxin polar transport	3.29E-03
55	GO:0009451: RNA modification	3.55E-03
56	GO:0051225: spindle assembly	3.83E-03
57	GO:0010158: abaxial cell fate specification	3.83E-03
58	GO:0009696: salicylic acid metabolic process	3.83E-03
59	GO:0006284: base-excision repair	3.89E-03
60	GO:0000271: polysaccharide biosynthetic process	4.56E-03
61	GO:0048827: phyllome development	4.74E-03
62	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	4.74E-03
63	GO:0006559: L-phenylalanine catabolic process	4.74E-03
64	GO:0048831: regulation of shoot system development	4.74E-03
65	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	4.74E-03
66	GO:0003006: developmental process involved in reproduction	4.74E-03
67	GO:0009736: cytokinin-activated signaling pathway	4.81E-03
68	GO:0045489: pectin biosynthetic process	4.92E-03
69	GO:0009793: embryo development ending in seed dormancy	5.41E-03
70	GO:0048444: floral organ morphogenesis	5.72E-03
71	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	5.72E-03
72	GO:0009942: longitudinal axis specification	5.72E-03
73	GO:0048509: regulation of meristem development	5.72E-03
74	GO:0002229: defense response to oomycetes	6.08E-03
75	GO:0009658: chloroplast organization	6.68E-03
76	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	6.76E-03
77	GO:0006401: RNA catabolic process	6.76E-03
78	GO:0009610: response to symbiotic fungus	6.76E-03
79	GO:0010050: vegetative phase change	6.76E-03
80	GO:0000082: G1/S transition of mitotic cell cycle	6.76E-03
81	GO:0010444: guard mother cell differentiation	6.76E-03
82	GO:0000105: histidine biosynthetic process	7.86E-03
83	GO:0006353: DNA-templated transcription, termination	7.86E-03
84	GO:0009850: auxin metabolic process	7.86E-03
85	GO:0044030: regulation of DNA methylation	9.03E-03
86	GO:0009932: cell tip growth	9.03E-03
87	GO:0071482: cellular response to light stimulus	9.03E-03
88	GO:0009657: plastid organization	9.03E-03
89	GO:0010052: guard cell differentiation	9.03E-03
90	GO:0032544: plastid translation	9.03E-03
91	GO:0007389: pattern specification process	9.03E-03
92	GO:0009627: systemic acquired resistance	9.86E-03
93	GO:0000373: Group II intron splicing	1.03E-02
94	GO:0048589: developmental growth	1.03E-02
95	GO:0009056: catabolic process	1.03E-02
96	GO:0048507: meristem development	1.03E-02
97	GO:0046916: cellular transition metal ion homeostasis	1.03E-02
98	GO:0006783: heme biosynthetic process	1.03E-02
99	GO:0015995: chlorophyll biosynthetic process	1.04E-02
100	GO:0008202: steroid metabolic process	1.15E-02
101	GO:0009832: plant-type cell wall biogenesis	1.21E-02
102	GO:0010192: mucilage biosynthetic process	1.29E-02
103	GO:0006782: protoporphyrinogen IX biosynthetic process	1.29E-02
104	GO:0019538: protein metabolic process	1.29E-02
105	GO:0006535: cysteine biosynthetic process from serine	1.29E-02
106	GO:0006865: amino acid transport	1.40E-02
107	GO:0016485: protein processing	1.43E-02
108	GO:0048765: root hair cell differentiation	1.43E-02
109	GO:0006352: DNA-templated transcription, initiation	1.43E-02
110	GO:0016051: carbohydrate biosynthetic process	1.47E-02
111	GO:0006790: sulfur compound metabolic process	1.57E-02
112	GO:0045037: protein import into chloroplast stroma	1.57E-02
113	GO:0010152: pollen maturation	1.57E-02
114	GO:0030001: metal ion transport	1.67E-02
115	GO:0010229: inflorescence development	1.72E-02
116	GO:0009718: anthocyanin-containing compound biosynthetic process	1.72E-02
117	GO:0009767: photosynthetic electron transport chain	1.72E-02
118	GO:0009934: regulation of meristem structural organization	1.87E-02
119	GO:0048467: gynoecium development	1.87E-02
120	GO:0010020: chloroplast fission	1.87E-02
121	GO:0009933: meristem structural organization	1.87E-02
122	GO:0010207: photosystem II assembly	1.87E-02
123	GO:0009733: response to auxin	1.94E-02
124	GO:0046854: phosphatidylinositol phosphorylation	2.03E-02
125	GO:0010053: root epidermal cell differentiation	2.03E-02
126	GO:0006863: purine nucleobase transport	2.20E-02
127	GO:0009833: plant-type primary cell wall biogenesis	2.20E-02
128	GO:0019344: cysteine biosynthetic process	2.36E-02
129	GO:0080147: root hair cell development	2.36E-02
130	GO:0051017: actin filament bundle assembly	2.36E-02
131	GO:0006355: regulation of transcription, DNA-templated	2.44E-02
132	GO:0051302: regulation of cell division	2.54E-02
133	GO:0006418: tRNA aminoacylation for protein translation	2.54E-02
134	GO:0006874: cellular calcium ion homeostasis	2.54E-02
135	GO:0043622: cortical microtubule organization	2.54E-02
136	GO:0006364: rRNA processing	2.56E-02
137	GO:0006306: DNA methylation	2.71E-02
138	GO:0016226: iron-sulfur cluster assembly	2.89E-02
139	GO:0071215: cellular response to abscisic acid stimulus	3.08E-02
140	GO:0009686: gibberellin biosynthetic process	3.08E-02
141	GO:0010082: regulation of root meristem growth	3.08E-02
142	GO:0048443: stamen development	3.27E-02
143	GO:0010091: trichome branching	3.27E-02
144	GO:0042127: regulation of cell proliferation	3.27E-02
145	GO:0080167: response to karrikin	3.45E-02
146	GO:0070417: cellular response to cold	3.46E-02
147	GO:0009624: response to nematode	3.64E-02
148	GO:0010087: phloem or xylem histogenesis	3.66E-02
149	GO:0048653: anther development	3.66E-02
150	GO:0000226: microtubule cytoskeleton organization	3.66E-02
151	GO:0051726: regulation of cell cycle	3.85E-02
152	GO:0048868: pollen tube development	3.86E-02
153	GO:0009741: response to brassinosteroid	3.86E-02
154	GO:0010305: leaf vascular tissue pattern formation	3.86E-02
155	GO:0008654: phospholipid biosynthetic process	4.27E-02
156	GO:0009791: post-embryonic development	4.27E-02
157	GO:0048825: cotyledon development	4.27E-02
158	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	4.48E-02
159	GO:0031047: gene silencing by RNA	4.69E-02
160	GO:0006468: protein phosphorylation	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
2	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
3	GO:0008859: exoribonuclease II activity	0.00E+00
4	GO:0004401: histidinol-phosphatase activity	0.00E+00
5	GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity	0.00E+00
6	GO:0019808: polyamine binding	0.00E+00
7	GO:0010011: auxin binding	1.11E-04
8	GO:0010328: auxin influx transmembrane transporter activity	1.11E-04
9	GO:0008725: DNA-3-methyladenine glycosylase activity	1.71E-04
10	GO:0010347: L-galactose-1-phosphate phosphatase activity	4.37E-04
11	GO:0047807: cytokinin 7-beta-glucosyltransferase activity	4.37E-04
12	GO:0004831: tyrosine-tRNA ligase activity	4.37E-04
13	GO:0008568: microtubule-severing ATPase activity	4.37E-04
14	GO:0080062: cytokinin 9-beta-glucosyltransferase activity	4.37E-04
15	GO:0004871: signal transducer activity	9.16E-04
16	GO:0050017: L-3-cyanoalanine synthase activity	9.44E-04
17	GO:0005094: Rho GDP-dissociation inhibitor activity	9.44E-04
18	GO:0010296: prenylcysteine methylesterase activity	9.44E-04
19	GO:0004047: aminomethyltransferase activity	9.44E-04
20	GO:0052832: inositol monophosphate 3-phosphatase activity	9.44E-04
21	GO:0004109: coproporphyrinogen oxidase activity	9.44E-04
22	GO:0008805: carbon-monoxide oxygenase activity	9.44E-04
23	GO:0008934: inositol monophosphate 1-phosphatase activity	9.44E-04
24	GO:0052833: inositol monophosphate 4-phosphatase activity	9.44E-04
25	GO:0009884: cytokinin receptor activity	9.44E-04
26	GO:0005034: osmosensor activity	1.54E-03
27	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	1.54E-03
28	GO:0016707: gibberellin 3-beta-dioxygenase activity	1.54E-03
29	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	1.54E-03
30	GO:0045548: phenylalanine ammonia-lyase activity	1.54E-03
31	GO:0042781: 3'-tRNA processing endoribonuclease activity	1.54E-03
32	GO:0005096: GTPase activator activity	1.87E-03
33	GO:0080031: methyl salicylate esterase activity	2.22E-03
34	GO:0043424: protein histidine kinase binding	2.73E-03
35	GO:0001053: plastid sigma factor activity	2.99E-03
36	GO:0016987: sigma factor activity	2.99E-03
37	GO:0010385: double-stranded methylated DNA binding	2.99E-03
38	GO:0043495: protein anchor	2.99E-03
39	GO:0004930: G-protein coupled receptor activity	2.99E-03
40	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	3.28E-03
41	GO:0043621: protein self-association	3.64E-03
42	GO:0005471: ATP:ADP antiporter activity	3.83E-03
43	GO:0080030: methyl indole-3-acetate esterase activity	4.74E-03
44	GO:0004462: lactoylglutathione lyase activity	4.74E-03
45	GO:0010181: FMN binding	5.29E-03
46	GO:0019900: kinase binding	5.72E-03
47	GO:0004124: cysteine synthase activity	5.72E-03
48	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	5.72E-03
49	GO:0019899: enzyme binding	6.76E-03
50	GO:0000156: phosphorelay response regulator activity	6.93E-03
51	GO:0008142: oxysterol binding	9.03E-03
52	GO:0046914: transition metal ion binding	9.03E-03
53	GO:0016758: transferase activity, transferring hexosyl groups	9.74E-03
54	GO:0008236: serine-type peptidase activity	1.10E-02
55	GO:0009672: auxin:proton symporter activity	1.15E-02
56	GO:0015020: glucuronosyltransferase activity	1.29E-02
57	GO:0004673: protein histidine kinase activity	1.29E-02
58	GO:0008327: methyl-CpG binding	1.43E-02
59	GO:0000155: phosphorelay sensor kinase activity	1.72E-02
60	GO:0009982: pseudouridine synthase activity	1.72E-02
61	GO:0000175: 3'-5'-exoribonuclease activity	1.72E-02
62	GO:0010329: auxin efflux transmembrane transporter activity	1.72E-02
63	GO:0005217: intracellular ligand-gated ion channel activity	2.03E-02
64	GO:0004970: ionotropic glutamate receptor activity	2.03E-02
65	GO:0035091: phosphatidylinositol binding	2.05E-02
66	GO:0015293: symporter activity	2.13E-02
67	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	2.20E-02
68	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	2.20E-02
69	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	2.20E-02
70	GO:0004857: enzyme inhibitor activity	2.36E-02
71	GO:0008134: transcription factor binding	2.36E-02
72	GO:0005345: purine nucleobase transmembrane transporter activity	2.54E-02
73	GO:0015079: potassium ion transmembrane transporter activity	2.54E-02
74	GO:0003700: transcription factor activity, sequence-specific DNA binding	2.64E-02
75	GO:0016788: hydrolase activity, acting on ester bonds	2.70E-02
76	GO:0004540: ribonuclease activity	2.71E-02
77	GO:0015171: amino acid transmembrane transporter activity	2.83E-02
78	GO:0016760: cellulose synthase (UDP-forming) activity	3.08E-02
79	GO:0030570: pectate lyase activity	3.08E-02
80	GO:0080043: quercetin 3-O-glucosyltransferase activity	3.32E-02
81	GO:0080044: quercetin 7-O-glucosyltransferase activity	3.32E-02
82	GO:0004674: protein serine/threonine kinase activity	3.42E-02
83	GO:0004812: aminoacyl-tRNA ligase activity	3.46E-02
84	GO:0004402: histone acetyltransferase activity	3.66E-02
85	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	3.86E-02
86	GO:0008080: N-acetyltransferase activity	3.86E-02
87	GO:0004386: helicase activity	3.96E-02
88	GO:0019901: protein kinase binding	4.27E-02
89	GO:0016762: xyloglucan:xyloglucosyl transferase activity	4.48E-02
90	GO:0019843: rRNA binding	4.54E-02
91	GO:0003676: nucleic acid binding	4.78E-02
92	GO:0003677: DNA binding	4.78E-02
93	GO:0051015: actin filament binding	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0035452: extrinsic component of plastid membrane	0.00E+00
3	GO:0042597: periplasmic space	0.00E+00
4	GO:0010370: perinucleolar chromocenter	4.37E-04
5	GO:0009507: chloroplast	1.27E-03
6	GO:0070652: HAUS complex	1.54E-03
7	GO:0032432: actin filament bundle	2.22E-03
8	GO:0009331: glycerol-3-phosphate dehydrogenase complex	2.22E-03
9	GO:0000178: exosome (RNase complex)	3.83E-03
10	GO:0009986: cell surface	6.76E-03
11	GO:0009570: chloroplast stroma	7.55E-03
12	GO:0005720: nuclear heterochromatin	1.03E-02
13	GO:0009707: chloroplast outer membrane	1.15E-02
14	GO:0005886: plasma membrane	1.41E-02
15	GO:0005884: actin filament	1.43E-02
16	GO:0005819: spindle	1.60E-02
17	GO:0016602: CCAAT-binding factor complex	1.72E-02
18	GO:0009574: preprophase band	1.72E-02
19	GO:0031977: thylakoid lumen	1.75E-02
20	GO:0000419: DNA-directed RNA polymerase V complex	2.20E-02
21	GO:0043234: protein complex	2.20E-02
22	GO:0009532: plastid stroma	2.71E-02
23	GO:0005874: microtubule	3.30E-02
24	GO:0005770: late endosome	3.86E-02
25	GO:0016592: mediator complex	4.69E-02
26	GO:0071944: cell periphery	4.91E-02