co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G12890

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010398: xylogalacturonan metabolic process	0.00E+00
2	GO:1900409: positive regulation of cellular response to oxidative stress	0.00E+00
3	GO:0072722: response to amitrole	0.00E+00
4	GO:0006216: cytidine catabolic process	0.00E+00
5	GO:0006616: SRP-dependent cotranslational protein targeting to membrane, translocation	0.00E+00
6	GO:0046283: anthocyanin-containing compound metabolic process	1.12E-05
7	GO:0006564: L-serine biosynthetic process	1.12E-05
8	GO:0006102: isocitrate metabolic process	4.35E-05
9	GO:0060862: negative regulation of floral organ abscission	8.43E-05
10	GO:0051252: regulation of RNA metabolic process	2.00E-04
11	GO:0031204: posttranslational protein targeting to membrane, translocation	2.00E-04
12	GO:0046939: nucleotide phosphorylation	2.00E-04
13	GO:0031349: positive regulation of defense response	2.00E-04
14	GO:1902000: homogentisate catabolic process	2.00E-04
15	GO:0000162: tryptophan biosynthetic process	2.29E-04
16	GO:0061158: 3'-UTR-mediated mRNA destabilization	3.35E-04
17	GO:0010272: response to silver ion	3.35E-04
18	GO:0009072: aromatic amino acid family metabolic process	3.35E-04
19	GO:0002230: positive regulation of defense response to virus by host	3.35E-04
20	GO:0055074: calcium ion homeostasis	3.35E-04
21	GO:1902290: positive regulation of defense response to oomycetes	4.84E-04
22	GO:0000187: activation of MAPK activity	4.84E-04
23	GO:0010188: response to microbial phytotoxin	6.44E-04
24	GO:0010600: regulation of auxin biosynthetic process	6.44E-04
25	GO:0006979: response to oxidative stress	7.23E-04
26	GO:0009972: cytidine deamination	9.94E-04
27	GO:0010942: positive regulation of cell death	9.94E-04
28	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	9.94E-04
29	GO:0009228: thiamine biosynthetic process	9.94E-04
30	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	9.94E-04
31	GO:0060918: auxin transport	9.94E-04
32	GO:0009099: valine biosynthetic process	1.18E-03
33	GO:0009082: branched-chain amino acid biosynthetic process	1.18E-03
34	GO:0009407: toxin catabolic process	1.26E-03
35	GO:0071669: plant-type cell wall organization or biogenesis	1.39E-03
36	GO:0050829: defense response to Gram-negative bacterium	1.39E-03
37	GO:1900057: positive regulation of leaf senescence	1.39E-03
38	GO:0006099: tricarboxylic acid cycle	1.50E-03
39	GO:0009819: drought recovery	1.60E-03
40	GO:0009097: isoleucine biosynthetic process	1.83E-03
41	GO:0010204: defense response signaling pathway, resistance gene-independent	1.83E-03
42	GO:0022900: electron transport chain	1.83E-03
43	GO:0010112: regulation of systemic acquired resistance	2.06E-03
44	GO:0046685: response to arsenic-containing substance	2.06E-03
45	GO:0031347: regulation of defense response	2.22E-03
46	GO:1900426: positive regulation of defense response to bacterium	2.30E-03
47	GO:0009098: leucine biosynthetic process	2.30E-03
48	GO:0006032: chitin catabolic process	2.56E-03
49	GO:0000272: polysaccharide catabolic process	2.82E-03
50	GO:0071365: cellular response to auxin stimulus	3.09E-03
51	GO:0010102: lateral root morphogenesis	3.37E-03
52	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	3.37E-03
53	GO:0055114: oxidation-reduction process	3.47E-03
54	GO:0002237: response to molecule of bacterial origin	3.66E-03
55	GO:0007030: Golgi organization	3.95E-03
56	GO:0010073: meristem maintenance	4.89E-03
57	GO:0016998: cell wall macromolecule catabolic process	5.22E-03
58	GO:0009814: defense response, incompatible interaction	5.55E-03
59	GO:0010227: floral organ abscission	5.89E-03
60	GO:0045490: pectin catabolic process	6.01E-03
61	GO:0009306: protein secretion	6.24E-03
62	GO:0010051: xylem and phloem pattern formation	6.97E-03
63	GO:0042631: cellular response to water deprivation	6.97E-03
64	GO:0009617: response to bacterium	7.18E-03
65	GO:0006662: glycerol ether metabolic process	7.34E-03
66	GO:0045489: pectin biosynthetic process	7.34E-03
67	GO:0009851: auxin biosynthetic process	8.10E-03
68	GO:0010183: pollen tube guidance	8.10E-03
69	GO:1901657: glycosyl compound metabolic process	9.30E-03
70	GO:0006464: cellular protein modification process	9.72E-03
71	GO:0051607: defense response to virus	1.06E-02
72	GO:0009615: response to virus	1.10E-02
73	GO:0009627: systemic acquired resistance	1.19E-02
74	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.20E-02
75	GO:0010311: lateral root formation	1.37E-02
76	GO:0045454: cell redox homeostasis	1.38E-02
77	GO:0006499: N-terminal protein myristoylation	1.42E-02
78	GO:0007568: aging	1.47E-02
79	GO:0009631: cold acclimation	1.47E-02
80	GO:0034599: cellular response to oxidative stress	1.62E-02
81	GO:0042542: response to hydrogen peroxide	1.83E-02
82	GO:0008152: metabolic process	1.89E-02
83	GO:0000209: protein polyubiquitination	1.93E-02
84	GO:0009651: response to salt stress	2.05E-02
85	GO:0000165: MAPK cascade	2.15E-02
86	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	2.15E-02
87	GO:0006468: protein phosphorylation	2.48E-02
88	GO:0046686: response to cadmium ion	2.57E-02
89	GO:0009626: plant-type hypersensitive response	2.74E-02
90	GO:0009620: response to fungus	2.80E-02
91	GO:0042545: cell wall modification	2.92E-02
92	GO:0009611: response to wounding	3.10E-02
93	GO:0042744: hydrogen peroxide catabolic process	3.84E-02
94	GO:0016036: cellular response to phosphate starvation	4.19E-02
95	GO:0010150: leaf senescence	4.40E-02
96	GO:0010468: regulation of gene expression	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
2	GO:0016034: maleylacetoacetate isomerase activity	0.00E+00
3	GO:0051766: inositol trisphosphate kinase activity	0.00E+00
4	GO:0051670: inulinase activity	0.00E+00
5	GO:0047844: deoxycytidine deaminase activity	0.00E+00
6	GO:0051765: inositol tetrakisphosphate kinase activity	0.00E+00
7	GO:0004449: isocitrate dehydrogenase (NAD+) activity	3.52E-06
8	GO:0004714: transmembrane receptor protein tyrosine kinase activity	4.35E-05
9	GO:0031219: levanase activity	8.43E-05
10	GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity	8.43E-05
11	GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity	8.43E-05
12	GO:0010179: IAA-Ala conjugate hydrolase activity	8.43E-05
13	GO:0004425: indole-3-glycerol-phosphate synthase activity	8.43E-05
14	GO:0000824: inositol tetrakisphosphate 3-kinase activity	8.43E-05
15	GO:0051669: fructan beta-fructosidase activity	8.43E-05
16	GO:0047326: inositol tetrakisphosphate 5-kinase activity	8.43E-05
17	GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity	8.43E-05
18	GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity	2.00E-04
19	GO:0004617: phosphoglycerate dehydrogenase activity	2.00E-04
20	GO:0008428: ribonuclease inhibitor activity	2.00E-04
21	GO:0019172: glyoxalase III activity	2.00E-04
22	GO:0004049: anthranilate synthase activity	3.35E-04
23	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	3.35E-04
24	GO:0010178: IAA-amino acid conjugate hydrolase activity	4.84E-04
25	GO:0052656: L-isoleucine transaminase activity	4.84E-04
26	GO:0052654: L-leucine transaminase activity	4.84E-04
27	GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity	4.84E-04
28	GO:0052655: L-valine transaminase activity	4.84E-04
29	GO:0019201: nucleotide kinase activity	4.84E-04
30	GO:0004416: hydroxyacylglutathione hydrolase activity	4.84E-04
31	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	6.44E-04
32	GO:0005086: ARF guanyl-nucleotide exchange factor activity	6.44E-04
33	GO:0004084: branched-chain-amino-acid transaminase activity	6.44E-04
34	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	7.98E-04
35	GO:0008237: metallopeptidase activity	7.98E-04
36	GO:0008948: oxaloacetate decarboxylase activity	8.14E-04
37	GO:0035252: UDP-xylosyltransferase activity	9.94E-04
38	GO:0004126: cytidine deaminase activity	1.18E-03
39	GO:0004017: adenylate kinase activity	1.18E-03
40	GO:0004601: peroxidase activity	1.36E-03
41	GO:0043295: glutathione binding	1.39E-03
42	GO:0008121: ubiquinol-cytochrome-c reductase activity	1.39E-03
43	GO:0004708: MAP kinase kinase activity	1.60E-03
44	GO:0004364: glutathione transferase activity	1.77E-03
45	GO:0051287: NAD binding	2.22E-03
46	GO:0004568: chitinase activity	2.56E-03
47	GO:0004713: protein tyrosine kinase activity	2.56E-03
48	GO:0008794: arsenate reductase (glutaredoxin) activity	2.82E-03
49	GO:0005543: phospholipid binding	2.82E-03
50	GO:0015035: protein disulfide oxidoreductase activity	3.60E-03
51	GO:0031624: ubiquitin conjugating enzyme binding	3.66E-03
52	GO:0003824: catalytic activity	3.79E-03
53	GO:0008061: chitin binding	3.95E-03
54	GO:0003727: single-stranded RNA binding	6.24E-03
55	GO:0047134: protein-disulfide reductase activity	6.60E-03
56	GO:0004527: exonuclease activity	7.34E-03
57	GO:0001085: RNA polymerase II transcription factor binding	7.34E-03
58	GO:0004791: thioredoxin-disulfide reductase activity	7.72E-03
59	GO:0010181: FMN binding	7.72E-03
60	GO:0016740: transferase activity	7.73E-03
61	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	9.30E-03
62	GO:0016722: oxidoreductase activity, oxidizing metal ions	1.01E-02
63	GO:0016597: amino acid binding	1.06E-02
64	GO:0004674: protein serine/threonine kinase activity	1.15E-02
65	GO:0004683: calmodulin-dependent protein kinase activity	1.23E-02
66	GO:0102483: scopolin beta-glucosidase activity	1.23E-02
67	GO:0004806: triglyceride lipase activity	1.23E-02
68	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.33E-02
69	GO:0005096: GTPase activator activity	1.37E-02
70	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.47E-02
71	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.57E-02
72	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.67E-02
73	GO:0008422: beta-glucosidase activity	1.67E-02
74	GO:0045330: aspartyl esterase activity	2.50E-02
75	GO:0030599: pectinesterase activity	2.86E-02
76	GO:0051082: unfolded protein binding	2.98E-02
77	GO:0046872: metal ion binding	3.12E-02
78	GO:0008270: zinc ion binding	3.31E-02
79	GO:0016301: kinase activity	3.63E-02
80	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	3.84E-02
81	GO:0008565: protein transporter activity	3.98E-02
82	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.00E-02
83	GO:0046910: pectinesterase inhibitor activity	4.19E-02
84	GO:0005507: copper ion binding	4.31E-02
85	GO:0005524: ATP binding	4.70E-02

Rank	GO Term	Adjusted P value
1	GO:0031205: endoplasmic reticulum Sec complex	0.00E+00
2	GO:0005784: Sec61 translocon complex	0.00E+00
3	GO:0005788: endoplasmic reticulum lumen	5.89E-05
4	GO:0005950: anthranilate synthase complex	2.00E-04
5	GO:0030173: integral component of Golgi membrane	1.18E-03
6	GO:0031901: early endosome membrane	2.06E-03
7	GO:0005750: mitochondrial respiratory chain complex III	3.66E-03
8	GO:0005773: vacuole	4.01E-03
9	GO:0005886: plasma membrane	4.84E-03
10	GO:0005794: Golgi apparatus	6.16E-03
11	GO:0005737: cytoplasm	7.21E-03
12	GO:0016592: mediator complex	8.90E-03
13	GO:0071944: cell periphery	9.30E-03
14	GO:0005667: transcription factor complex	1.19E-02
15	GO:0000151: ubiquitin ligase complex	1.33E-02
16	GO:0090406: pollen tube	1.88E-02
17	GO:0009570: chloroplast stroma	1.88E-02
18	GO:0005829: cytosol	1.97E-02
19	GO:0005783: endoplasmic reticulum	2.09E-02
20	GO:0005774: vacuolar membrane	2.15E-02
21	GO:0005802: trans-Golgi network	4.84E-02