co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G12440

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046486: glycerolipid metabolic process	0.00E+00
2	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
3	GO:0019685: photosynthesis, dark reaction	0.00E+00
4	GO:0044154: histone H3-K14 acetylation	0.00E+00
5	GO:0045014: negative regulation of transcription by glucose	0.00E+00
6	GO:1905615: positive regulation of developmental vegetative growth	0.00E+00
7	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
8	GO:0045176: apical protein localization	0.00E+00
9	GO:0043972: histone H3-K23 acetylation	0.00E+00
10	GO:0080127: fruit septum development	0.00E+00
11	GO:0009451: RNA modification	8.23E-05
12	GO:0009416: response to light stimulus	1.71E-04
13	GO:0051013: microtubule severing	3.70E-04
14	GO:0034757: negative regulation of iron ion transport	3.70E-04
15	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	3.70E-04
16	GO:0051171: regulation of nitrogen compound metabolic process	3.70E-04
17	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	3.70E-04
18	GO:0043971: histone H3-K18 acetylation	3.70E-04
19	GO:0010070: zygote asymmetric cell division	3.70E-04
20	GO:0009926: auxin polar transport	3.75E-04
21	GO:0009734: auxin-activated signaling pathway	4.04E-04
22	GO:0007186: G-protein coupled receptor signaling pathway	5.06E-04
23	GO:0007389: pattern specification process	5.06E-04
24	GO:0043039: tRNA aminoacylation	8.05E-04
25	GO:0010069: zygote asymmetric cytokinesis in embryo sac	8.05E-04
26	GO:0080175: phragmoplast microtubule organization	8.05E-04
27	GO:0006650: glycerophospholipid metabolic process	8.05E-04
28	GO:0010271: regulation of chlorophyll catabolic process	8.05E-04
29	GO:0001736: establishment of planar polarity	8.05E-04
30	GO:0048829: root cap development	8.35E-04
31	GO:0010582: floral meristem determinacy	1.10E-03
32	GO:0045493: xylan catabolic process	1.30E-03
33	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	1.30E-03
34	GO:0046168: glycerol-3-phosphate catabolic process	1.30E-03
35	GO:0006013: mannose metabolic process	1.30E-03
36	GO:0080117: secondary growth	1.30E-03
37	GO:0042780: tRNA 3'-end processing	1.30E-03
38	GO:0010540: basipetal auxin transport	1.40E-03
39	GO:0009825: multidimensional cell growth	1.57E-03
40	GO:0080188: RNA-directed DNA methylation	1.57E-03
41	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.61E-03
42	GO:2001141: regulation of RNA biosynthetic process	1.88E-03
43	GO:0045017: glycerolipid biosynthetic process	1.88E-03
44	GO:0010116: positive regulation of abscisic acid biosynthetic process	1.88E-03
45	GO:0051639: actin filament network formation	1.88E-03
46	GO:0006072: glycerol-3-phosphate metabolic process	1.88E-03
47	GO:0009800: cinnamic acid biosynthetic process	1.88E-03
48	GO:0010255: glucose mediated signaling pathway	1.88E-03
49	GO:0003333: amino acid transmembrane transport	2.35E-03
50	GO:0009956: radial pattern formation	2.52E-03
51	GO:0051764: actin crosslink formation	2.52E-03
52	GO:0015846: polyamine transport	2.52E-03
53	GO:0006021: inositol biosynthetic process	2.52E-03
54	GO:0009793: embryo development ending in seed dormancy	2.85E-03
55	GO:0051225: spindle assembly	3.23E-03
56	GO:0010158: abaxial cell fate specification	3.23E-03
57	GO:0009616: virus induced gene silencing	3.23E-03
58	GO:0016558: protein import into peroxisome matrix	3.23E-03
59	GO:0000271: polysaccharide biosynthetic process	3.57E-03
60	GO:0045489: pectin biosynthetic process	3.84E-03
61	GO:0009958: positive gravitropism	3.84E-03
62	GO:0048827: phyllome development	3.99E-03
63	GO:0035194: posttranscriptional gene silencing by RNA	3.99E-03
64	GO:1901371: regulation of leaf morphogenesis	3.99E-03
65	GO:0006559: L-phenylalanine catabolic process	3.99E-03
66	GO:0048831: regulation of shoot system development	3.99E-03
67	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	3.99E-03
68	GO:0003006: developmental process involved in reproduction	3.99E-03
69	GO:0009658: chloroplast organization	4.57E-03
70	GO:0002229: defense response to oomycetes	4.74E-03
71	GO:0048444: floral organ morphogenesis	4.81E-03
72	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	4.81E-03
73	GO:1901001: negative regulation of response to salt stress	4.81E-03
74	GO:0009942: longitudinal axis specification	4.81E-03
75	GO:0048509: regulation of meristem development	4.81E-03
76	GO:0010583: response to cyclopentenone	5.07E-03
77	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	5.68E-03
78	GO:0006401: RNA catabolic process	5.68E-03
79	GO:0009610: response to symbiotic fungus	5.68E-03
80	GO:0010050: vegetative phase change	5.68E-03
81	GO:0010252: auxin homeostasis	5.75E-03
82	GO:0000105: histidine biosynthetic process	6.61E-03
83	GO:0009787: regulation of abscisic acid-activated signaling pathway	6.61E-03
84	GO:0006353: DNA-templated transcription, termination	6.61E-03
85	GO:0009850: auxin metabolic process	6.61E-03
86	GO:0071482: cellular response to light stimulus	7.58E-03
87	GO:0009657: plastid organization	7.58E-03
88	GO:0010052: guard cell differentiation	7.58E-03
89	GO:0032544: plastid translation	7.58E-03
90	GO:0044030: regulation of DNA methylation	7.58E-03
91	GO:0010411: xyloglucan metabolic process	8.10E-03
92	GO:0048507: meristem development	8.60E-03
93	GO:0046916: cellular transition metal ion homeostasis	8.60E-03
94	GO:0000373: Group II intron splicing	8.60E-03
95	GO:0048589: developmental growth	8.60E-03
96	GO:0000160: phosphorelay signal transduction system	9.44E-03
97	GO:0009832: plant-type cell wall biogenesis	9.44E-03
98	GO:0010380: regulation of chlorophyll biosynthetic process	9.67E-03
99	GO:0008202: steroid metabolic process	9.67E-03
100	GO:0010192: mucilage biosynthetic process	1.08E-02
101	GO:0006535: cysteine biosynthetic process from serine	1.08E-02
102	GO:0006865: amino acid transport	1.09E-02
103	GO:0016051: carbohydrate biosynthetic process	1.14E-02
104	GO:0016485: protein processing	1.19E-02
105	GO:0048765: root hair cell differentiation	1.19E-02
106	GO:0009089: lysine biosynthetic process via diaminopimelate	1.19E-02
107	GO:0006352: DNA-templated transcription, initiation	1.19E-02
108	GO:0009733: response to auxin	1.20E-02
109	GO:0030001: metal ion transport	1.30E-02
110	GO:0006790: sulfur compound metabolic process	1.32E-02
111	GO:0005983: starch catabolic process	1.32E-02
112	GO:0045037: protein import into chloroplast stroma	1.32E-02
113	GO:0010152: pollen maturation	1.32E-02
114	GO:0010229: inflorescence development	1.44E-02
115	GO:0009718: anthocyanin-containing compound biosynthetic process	1.44E-02
116	GO:0009934: regulation of meristem structural organization	1.57E-02
117	GO:0048467: gynoecium development	1.57E-02
118	GO:0010020: chloroplast fission	1.57E-02
119	GO:0009933: meristem structural organization	1.57E-02
120	GO:0046854: phosphatidylinositol phosphorylation	1.70E-02
121	GO:0006863: purine nucleobase transport	1.84E-02
122	GO:0009833: plant-type primary cell wall biogenesis	1.84E-02
123	GO:0019344: cysteine biosynthetic process	1.98E-02
124	GO:0010187: negative regulation of seed germination	1.98E-02
125	GO:0080147: root hair cell development	1.98E-02
126	GO:0051017: actin filament bundle assembly	1.98E-02
127	GO:0006364: rRNA processing	1.99E-02
128	GO:0009736: cytokinin-activated signaling pathway	1.99E-02
129	GO:0051302: regulation of cell division	2.12E-02
130	GO:0006418: tRNA aminoacylation for protein translation	2.12E-02
131	GO:0006874: cellular calcium ion homeostasis	2.12E-02
132	GO:0043622: cortical microtubule organization	2.12E-02
133	GO:0006306: DNA methylation	2.27E-02
134	GO:0016226: iron-sulfur cluster assembly	2.42E-02
135	GO:0080167: response to karrikin	2.53E-02
136	GO:0071215: cellular response to abscisic acid stimulus	2.58E-02
137	GO:0009686: gibberellin biosynthetic process	2.58E-02
138	GO:0009740: gibberellic acid mediated signaling pathway	2.67E-02
139	GO:0048443: stamen development	2.73E-02
140	GO:0006284: base-excision repair	2.73E-02
141	GO:0010091: trichome branching	2.73E-02
142	GO:0071555: cell wall organization	2.77E-02
143	GO:0009624: response to nematode	2.84E-02
144	GO:0070417: cellular response to cold	2.90E-02
145	GO:0010087: phloem or xylem histogenesis	3.06E-02
146	GO:0048653: anther development	3.06E-02
147	GO:0000226: microtubule cytoskeleton organization	3.06E-02
148	GO:0048868: pollen tube development	3.23E-02
149	GO:0010305: leaf vascular tissue pattern formation	3.23E-02
150	GO:0016567: protein ubiquitination	3.36E-02
151	GO:0008654: phospholipid biosynthetic process	3.57E-02
152	GO:0048825: cotyledon development	3.57E-02
153	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.75E-02
154	GO:0006635: fatty acid beta-oxidation	3.75E-02
155	GO:0031047: gene silencing by RNA	3.93E-02
156	GO:0009639: response to red or far red light	4.30E-02
157	GO:0048364: root development	4.31E-02
158	GO:0006633: fatty acid biosynthetic process	4.45E-02
159	GO:0009911: positive regulation of flower development	4.87E-02

Rank	GO Term	Adjusted P value
1	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
2	GO:0008859: exoribonuclease II activity	0.00E+00
3	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
4	GO:0004401: histidinol-phosphatase activity	0.00E+00
5	GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity	0.00E+00
6	GO:0019808: polyamine binding	0.00E+00
7	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
8	GO:0010011: auxin binding	8.40E-05
9	GO:0010328: auxin influx transmembrane transporter activity	8.40E-05
10	GO:0010347: L-galactose-1-phosphate phosphatase activity	3.70E-04
11	GO:0047807: cytokinin 7-beta-glucosyltransferase activity	3.70E-04
12	GO:0008836: diaminopimelate decarboxylase activity	3.70E-04
13	GO:0004831: tyrosine-tRNA ligase activity	3.70E-04
14	GO:0008568: microtubule-severing ATPase activity	3.70E-04
15	GO:0080062: cytokinin 9-beta-glucosyltransferase activity	3.70E-04
16	GO:0004871: signal transducer activity	5.57E-04
17	GO:0009672: auxin:proton symporter activity	7.16E-04
18	GO:0050017: L-3-cyanoalanine synthase activity	8.05E-04
19	GO:0004047: aminomethyltransferase activity	8.05E-04
20	GO:0052832: inositol monophosphate 3-phosphatase activity	8.05E-04
21	GO:0008805: carbon-monoxide oxygenase activity	8.05E-04
22	GO:0008934: inositol monophosphate 1-phosphatase activity	8.05E-04
23	GO:0052833: inositol monophosphate 4-phosphatase activity	8.05E-04
24	GO:0009884: cytokinin receptor activity	8.05E-04
25	GO:0019156: isoamylase activity	8.05E-04
26	GO:0010329: auxin efflux transmembrane transporter activity	1.24E-03
27	GO:0005034: osmosensor activity	1.30E-03
28	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	1.30E-03
29	GO:0016707: gibberellin 3-beta-dioxygenase activity	1.30E-03
30	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	1.30E-03
31	GO:0045548: phenylalanine ammonia-lyase activity	1.30E-03
32	GO:0042781: 3'-tRNA processing endoribonuclease activity	1.30E-03
33	GO:0004540: ribonuclease activity	2.35E-03
34	GO:0046556: alpha-L-arabinofuranosidase activity	2.52E-03
35	GO:0001053: plastid sigma factor activity	2.52E-03
36	GO:0016987: sigma factor activity	2.52E-03
37	GO:0010385: double-stranded methylated DNA binding	2.52E-03
38	GO:0004930: G-protein coupled receptor activity	2.52E-03
39	GO:0009044: xylan 1,4-beta-xylosidase activity	2.52E-03
40	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.57E-03
41	GO:0043621: protein self-association	2.65E-03
42	GO:0005471: ATP:ADP antiporter activity	3.23E-03
43	GO:0008725: DNA-3-methyladenine glycosylase activity	3.23E-03
44	GO:0004556: alpha-amylase activity	3.99E-03
45	GO:0004462: lactoylglutathione lyase activity	3.99E-03
46	GO:0019900: kinase binding	4.81E-03
47	GO:0004559: alpha-mannosidase activity	4.81E-03
48	GO:0004124: cysteine synthase activity	4.81E-03
49	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.81E-03
50	GO:0019899: enzyme binding	5.68E-03
51	GO:0016758: transferase activity, transferring hexosyl groups	7.09E-03
52	GO:0008142: oxysterol binding	7.58E-03
53	GO:0003724: RNA helicase activity	7.58E-03
54	GO:0046914: transition metal ion binding	7.58E-03
55	GO:0015020: glucuronosyltransferase activity	1.08E-02
56	GO:0004673: protein histidine kinase activity	1.08E-02
57	GO:0008327: methyl-CpG binding	1.19E-02
58	GO:0004519: endonuclease activity	1.30E-02
59	GO:0000155: phosphorelay sensor kinase activity	1.44E-02
60	GO:0009982: pseudouridine synthase activity	1.44E-02
61	GO:0000175: 3'-5'-exoribonuclease activity	1.44E-02
62	GO:0004535: poly(A)-specific ribonuclease activity	1.57E-02
63	GO:0015293: symporter activity	1.66E-02
64	GO:0005217: intracellular ligand-gated ion channel activity	1.70E-02
65	GO:0004970: ionotropic glutamate receptor activity	1.70E-02
66	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.84E-02
67	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.84E-02
68	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.84E-02
69	GO:0004857: enzyme inhibitor activity	1.98E-02
70	GO:0008134: transcription factor binding	1.98E-02
71	GO:0043424: protein histidine kinase binding	2.12E-02
72	GO:0005345: purine nucleobase transmembrane transporter activity	2.12E-02
73	GO:0015171: amino acid transmembrane transporter activity	2.21E-02
74	GO:0016760: cellulose synthase (UDP-forming) activity	2.58E-02
75	GO:0030570: pectate lyase activity	2.58E-02
76	GO:0080043: quercetin 3-O-glucosyltransferase activity	2.59E-02
77	GO:0080044: quercetin 7-O-glucosyltransferase activity	2.59E-02
78	GO:0004812: aminoacyl-tRNA ligase activity	2.90E-02
79	GO:0004402: histone acetyltransferase activity	3.06E-02
80	GO:0008080: N-acetyltransferase activity	3.23E-02
81	GO:0001085: RNA polymerase II transcription factor binding	3.23E-02
82	GO:0005215: transporter activity	3.27E-02
83	GO:0019843: rRNA binding	3.55E-02
84	GO:0019901: protein kinase binding	3.57E-02
85	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.75E-02
86	GO:0051015: actin filament binding	4.11E-02
87	GO:0004674: protein serine/threonine kinase activity	4.11E-02
88	GO:0000156: phosphorelay response regulator activity	4.11E-02
89	GO:0016759: cellulose synthase activity	4.30E-02
90	GO:0008237: metallopeptidase activity	4.49E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0035452: extrinsic component of plastid membrane	0.00E+00
3	GO:0042597: periplasmic space	0.00E+00
4	GO:0010370: perinucleolar chromocenter	3.70E-04
5	GO:0009569: chloroplast starch grain	8.05E-04
6	GO:0070652: HAUS complex	1.30E-03
7	GO:0032432: actin filament bundle	1.88E-03
8	GO:0009331: glycerol-3-phosphate dehydrogenase complex	1.88E-03
9	GO:0000178: exosome (RNase complex)	3.23E-03
10	GO:0009507: chloroplast	3.93E-03
11	GO:0009986: cell surface	5.68E-03
12	GO:0009570: chloroplast stroma	7.96E-03
13	GO:0005720: nuclear heterochromatin	8.60E-03
14	GO:0009707: chloroplast outer membrane	8.97E-03
15	GO:0005884: actin filament	1.19E-02
16	GO:0005819: spindle	1.25E-02
17	GO:0016602: CCAAT-binding factor complex	1.44E-02
18	GO:0000419: DNA-directed RNA polymerase V complex	1.84E-02
19	GO:0005874: microtubule	2.42E-02
20	GO:0005770: late endosome	3.23E-02
21	GO:0005886: plasma membrane	3.27E-02
22	GO:0009536: plastid	3.88E-02
23	GO:0009505: plant-type cell wall	4.02E-02
24	GO:0071944: cell periphery	4.11E-02
25	GO:0010319: stromule	4.49E-02
26	GO:0043231: intracellular membrane-bounded organelle	4.61E-02
27	GO:0000932: P-body	4.87E-02