Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G11880

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1905615: positive regulation of developmental vegetative growth0.00E+00
2GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA0.00E+00
3GO:0046486: glycerolipid metabolic process0.00E+00
4GO:0010495: long-distance posttranscriptional gene silencing4.18E-05
5GO:0043039: tRNA aminoacylation1.04E-04
6GO:0006650: glycerophospholipid metabolic process1.04E-04
7GO:0009220: pyrimidine ribonucleotide biosynthetic process1.04E-04
8GO:0046168: glycerol-3-phosphate catabolic process1.78E-04
9GO:0070919: production of siRNA involved in chromatin silencing by small RNA1.78E-04
10GO:0006518: peptide metabolic process1.78E-04
11GO:0009451: RNA modification2.51E-04
12GO:0044211: CTP salvage2.63E-04
13GO:0006072: glycerol-3-phosphate metabolic process2.63E-04
14GO:0006424: glutamyl-tRNA aminoacylation2.63E-04
15GO:2000904: regulation of starch metabolic process2.63E-04
16GO:0045017: glycerolipid biosynthetic process2.63E-04
17GO:0010116: positive regulation of abscisic acid biosynthetic process2.63E-04
18GO:0044206: UMP salvage3.53E-04
19GO:0044205: 'de novo' UMP biosynthetic process3.53E-04
20GO:1901371: regulation of leaf morphogenesis5.51E-04
21GO:0006206: pyrimidine nucleobase metabolic process5.51E-04
22GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione5.51E-04
23GO:0016458: gene silencing5.51E-04
24GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity6.58E-04
25GO:1901001: negative regulation of response to salt stress6.58E-04
26GO:0007050: cell cycle arrest7.69E-04
27GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process7.69E-04
28GO:0009610: response to symbiotic fungus7.69E-04
29GO:0048564: photosystem I assembly8.84E-04
30GO:0045292: mRNA cis splicing, via spliceosome8.84E-04
31GO:0009787: regulation of abscisic acid-activated signaling pathway8.84E-04
32GO:0000373: Group II intron splicing1.13E-03
33GO:1900865: chloroplast RNA modification1.25E-03
34GO:0010192: mucilage biosynthetic process1.39E-03
35GO:0030422: production of siRNA involved in RNA interference1.39E-03
36GO:0016441: posttranscriptional gene silencing1.39E-03
37GO:0005975: carbohydrate metabolic process1.51E-03
38GO:0016485: protein processing1.53E-03
39GO:0005983: starch catabolic process1.67E-03
40GO:0045037: protein import into chloroplast stroma1.67E-03
41GO:0080188: RNA-directed DNA methylation2.13E-03
42GO:0006863: purine nucleobase transport2.29E-03
43GO:0009833: plant-type primary cell wall biogenesis2.29E-03
44GO:0009116: nucleoside metabolic process2.46E-03
45GO:0009739: response to gibberellin2.71E-03
46GO:0006306: DNA methylation2.80E-03
47GO:0016226: iron-sulfur cluster assembly2.97E-03
48GO:0007005: mitochondrion organization2.97E-03
49GO:0009686: gibberellin biosynthetic process3.15E-03
50GO:0009658: chloroplast organization3.73E-03
51GO:0008654: phospholipid biosynthetic process4.31E-03
52GO:0010583: response to cyclopentenone4.72E-03
53GO:0031047: gene silencing by RNA4.72E-03
54GO:0009639: response to red or far red light5.15E-03
55GO:0009627: systemic acquired resistance6.27E-03
56GO:0006974: cellular response to DNA damage stimulus6.27E-03
57GO:0048481: plant ovule development6.98E-03
58GO:0030244: cellulose biosynthetic process6.98E-03
59GO:0009832: plant-type cell wall biogenesis7.22E-03
60GO:0010114: response to red light9.82E-03
61GO:0009416: response to light stimulus1.21E-02
62GO:0006364: rRNA processing1.21E-02
63GO:0009740: gibberellic acid mediated signaling pathway1.49E-02
64GO:0051726: regulation of cell cycle1.62E-02
65GO:0006508: proteolysis1.89E-02
66GO:0009058: biosynthetic process1.89E-02
67GO:0016036: cellular response to phosphate starvation2.18E-02
68GO:0042254: ribosome biogenesis3.17E-02
69GO:0007049: cell cycle3.38E-02
70GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.74E-02
71GO:0009751: response to salicylic acid4.76E-02
72GO:0006397: mRNA processing4.96E-02
RankGO TermAdjusted P value
1GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
2GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
3GO:0004818: glutamate-tRNA ligase activity4.18E-05
4GO:0004047: aminomethyltransferase activity1.04E-04
5GO:0019156: isoamylase activity1.04E-04
6GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.78E-04
7GO:0016707: gibberellin 3-beta-dioxygenase activity1.78E-04
8GO:0004845: uracil phosphoribosyltransferase activity3.53E-04
9GO:0004222: metalloendopeptidase activity5.25E-04
10GO:0004556: alpha-amylase activity5.51E-04
11GO:0004462: lactoylglutathione lyase activity5.51E-04
12GO:0003968: RNA-directed 5'-3' RNA polymerase activity5.51E-04
13GO:0004849: uridine kinase activity6.58E-04
14GO:0000049: tRNA binding1.67E-03
15GO:0009982: pseudouridine synthase activity1.82E-03
16GO:0008134: transcription factor binding2.46E-03
17GO:0005345: purine nucleobase transmembrane transporter activity2.62E-03
18GO:0016760: cellulose synthase (UDP-forming) activity3.15E-03
19GO:0019901: protein kinase binding4.31E-03
20GO:0003723: RNA binding5.00E-03
21GO:0016759: cellulose synthase activity5.15E-03
22GO:0008237: metallopeptidase activity5.36E-03
23GO:0004871: signal transducer activity5.77E-03
24GO:0004519: endonuclease activity7.38E-03
25GO:0004693: cyclin-dependent protein serine/threonine kinase activity7.47E-03
26GO:0004712: protein serine/threonine/tyrosine kinase activity8.75E-03
27GO:0051287: NAD binding1.12E-02
28GO:0008234: cysteine-type peptidase activity1.30E-02
29GO:0004386: helicase activity1.65E-02
30GO:0008565: protein transporter activity2.07E-02
31GO:0003676: nucleic acid binding2.72E-02
32GO:0046982: protein heterodimerization activity3.09E-02
33GO:0042803: protein homodimerization activity4.29E-02
RankGO TermAdjusted P value
1GO:0009569: chloroplast starch grain1.04E-04
2GO:0009507: chloroplast1.10E-04
3GO:0009331: glycerol-3-phosphate dehydrogenase complex2.63E-04
4GO:0042644: chloroplast nucleoid1.13E-03
5GO:0016602: CCAAT-binding factor complex1.82E-03
6GO:0000419: DNA-directed RNA polymerase V complex2.29E-03
7GO:0010319: stromule5.36E-03
8GO:0031977: thylakoid lumen9.28E-03
9GO:0009570: chloroplast stroma1.38E-02
10GO:0009706: chloroplast inner membrane1.55E-02
11GO:0005654: nucleoplasm1.79E-02
12GO:0005623: cell1.86E-02
13GO:0005759: mitochondrial matrix2.14E-02
14GO:0005739: mitochondrion4.18E-02
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Gene type



Gene DE type