co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G11690

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006573: valine metabolic process	0.00E+00
2	GO:0045176: apical protein localization	0.00E+00
3	GO:0000372: Group I intron splicing	0.00E+00
4	GO:0080127: fruit septum development	0.00E+00
5	GO:0070979: protein K11-linked ubiquitination	0.00E+00
6	GO:0000373: Group II intron splicing	3.34E-07
7	GO:1902025: nitrate import	3.37E-04
8	GO:0019478: D-amino acid catabolic process	3.37E-04
9	GO:0009090: homoserine biosynthetic process	3.37E-04
10	GO:0000012: single strand break repair	3.37E-04
11	GO:0043266: regulation of potassium ion transport	3.37E-04
12	GO:0006551: leucine metabolic process	3.37E-04
13	GO:0043087: regulation of GTPase activity	3.37E-04
14	GO:2000021: regulation of ion homeostasis	3.37E-04
15	GO:0006436: tryptophanyl-tRNA aminoacylation	3.37E-04
16	GO:0090548: response to nitrate starvation	3.37E-04
17	GO:0000066: mitochondrial ornithine transport	3.37E-04
18	GO:0034757: negative regulation of iron ion transport	3.37E-04
19	GO:0010271: regulation of chlorophyll catabolic process	7.34E-04
20	GO:0010582: floral meristem determinacy	9.59E-04
21	GO:0080117: secondary growth	1.19E-03
22	GO:0031145: anaphase-promoting complex-dependent catabolic process	1.19E-03
23	GO:0030029: actin filament-based process	1.19E-03
24	GO:0031022: nuclear migration along microfilament	1.19E-03
25	GO:0042989: sequestering of actin monomers	1.71E-03
26	GO:0009800: cinnamic acid biosynthetic process	1.71E-03
27	GO:2000904: regulation of starch metabolic process	1.71E-03
28	GO:0009067: aspartate family amino acid biosynthetic process	1.71E-03
29	GO:0051513: regulation of monopolar cell growth	1.71E-03
30	GO:0009102: biotin biosynthetic process	1.71E-03
31	GO:0030071: regulation of mitotic metaphase/anaphase transition	1.71E-03
32	GO:0051639: actin filament network formation	1.71E-03
33	GO:0034059: response to anoxia	1.71E-03
34	GO:0010239: chloroplast mRNA processing	1.71E-03
35	GO:0044211: CTP salvage	1.71E-03
36	GO:0008295: spermidine biosynthetic process	2.30E-03
37	GO:0044206: UMP salvage	2.30E-03
38	GO:0051764: actin crosslink formation	2.30E-03
39	GO:0048442: sepal development	2.30E-03
40	GO:0009696: salicylic acid metabolic process	2.93E-03
41	GO:0080110: sporopollenin biosynthetic process	2.93E-03
42	GO:0016131: brassinosteroid metabolic process	2.93E-03
43	GO:0030041: actin filament polymerization	2.93E-03
44	GO:0009904: chloroplast accumulation movement	2.93E-03
45	GO:0031365: N-terminal protein amino acid modification	2.93E-03
46	GO:0016123: xanthophyll biosynthetic process	2.93E-03
47	GO:0010158: abaxial cell fate specification	2.93E-03
48	GO:0032876: negative regulation of DNA endoreduplication	2.93E-03
49	GO:0010087: phloem or xylem histogenesis	3.10E-03
50	GO:0007018: microtubule-based movement	3.59E-03
51	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	3.63E-03
52	GO:0006559: L-phenylalanine catabolic process	3.63E-03
53	GO:0006206: pyrimidine nucleobase metabolic process	3.63E-03
54	GO:0048831: regulation of shoot system development	3.63E-03
55	GO:0010190: cytochrome b6f complex assembly	3.63E-03
56	GO:0003006: developmental process involved in reproduction	3.63E-03
57	GO:0048827: phyllome development	3.63E-03
58	GO:0016554: cytidine to uridine editing	3.63E-03
59	GO:0042372: phylloquinone biosynthetic process	4.37E-03
60	GO:0010076: maintenance of floral meristem identity	4.37E-03
61	GO:0009082: branched-chain amino acid biosynthetic process	4.37E-03
62	GO:0048509: regulation of meristem development	4.37E-03
63	GO:0009099: valine biosynthetic process	4.37E-03
64	GO:0009903: chloroplast avoidance movement	4.37E-03
65	GO:0009088: threonine biosynthetic process	4.37E-03
66	GO:0009648: photoperiodism	4.37E-03
67	GO:0007264: small GTPase mediated signal transduction	4.40E-03
68	GO:0010050: vegetative phase change	5.15E-03
69	GO:0010098: suspensor development	5.15E-03
70	GO:0051510: regulation of unidimensional cell growth	5.15E-03
71	GO:0006955: immune response	5.15E-03
72	GO:0070413: trehalose metabolism in response to stress	5.99E-03
73	GO:0009850: auxin metabolic process	5.99E-03
74	GO:0032875: regulation of DNA endoreduplication	5.99E-03
75	GO:0048564: photosystem I assembly	5.99E-03
76	GO:0009657: plastid organization	6.87E-03
77	GO:0009097: isoleucine biosynthetic process	6.87E-03
78	GO:0032544: plastid translation	6.87E-03
79	GO:0071482: cellular response to light stimulus	6.87E-03
80	GO:0009827: plant-type cell wall modification	6.87E-03
81	GO:0048507: meristem development	7.79E-03
82	GO:0000160: phosphorelay signal transduction system	8.19E-03
83	GO:0040008: regulation of growth	8.70E-03
84	GO:0010018: far-red light signaling pathway	8.75E-03
85	GO:0009086: methionine biosynthetic process	8.75E-03
86	GO:1900865: chloroplast RNA modification	8.75E-03
87	GO:0016571: histone methylation	8.75E-03
88	GO:0016573: histone acetylation	8.75E-03
89	GO:0009451: RNA modification	9.51E-03
90	GO:0048441: petal development	9.76E-03
91	GO:0006535: cysteine biosynthetic process from serine	9.76E-03
92	GO:0009089: lysine biosynthetic process via diaminopimelate	1.08E-02
93	GO:0045037: protein import into chloroplast stroma	1.19E-02
94	GO:0008283: cell proliferation	1.28E-02
95	GO:0009691: cytokinin biosynthetic process	1.30E-02
96	GO:0010229: inflorescence development	1.30E-02
97	GO:0010020: chloroplast fission	1.42E-02
98	GO:0010540: basipetal auxin transport	1.42E-02
99	GO:0009266: response to temperature stimulus	1.42E-02
100	GO:0006302: double-strand break repair	1.42E-02
101	GO:0048467: gynoecium development	1.42E-02
102	GO:0048440: carpel development	1.42E-02
103	GO:0009636: response to toxic substance	1.44E-02
104	GO:0090351: seedling development	1.54E-02
105	GO:0009658: chloroplast organization	1.61E-02
106	GO:0042753: positive regulation of circadian rhythm	1.66E-02
107	GO:0006863: purine nucleobase transport	1.66E-02
108	GO:0006364: rRNA processing	1.73E-02
109	GO:0009736: cytokinin-activated signaling pathway	1.73E-02
110	GO:0006338: chromatin remodeling	1.79E-02
111	GO:0007010: cytoskeleton organization	1.79E-02
112	GO:0051017: actin filament bundle assembly	1.79E-02
113	GO:0006289: nucleotide-excision repair	1.79E-02
114	GO:0005992: trehalose biosynthetic process	1.79E-02
115	GO:0019344: cysteine biosynthetic process	1.79E-02
116	GO:0006418: tRNA aminoacylation for protein translation	1.92E-02
117	GO:0016998: cell wall macromolecule catabolic process	2.05E-02
118	GO:0048316: seed development	2.11E-02
119	GO:0035428: hexose transmembrane transport	2.19E-02
120	GO:0016226: iron-sulfur cluster assembly	2.19E-02
121	GO:0009416: response to light stimulus	2.19E-02
122	GO:0071215: cellular response to abscisic acid stimulus	2.33E-02
123	GO:0010584: pollen exine formation	2.47E-02
124	GO:0048443: stamen development	2.47E-02
125	GO:0070417: cellular response to cold	2.62E-02
126	GO:0016117: carotenoid biosynthetic process	2.62E-02
127	GO:0008033: tRNA processing	2.77E-02
128	GO:0045489: pectin biosynthetic process	2.92E-02
129	GO:0009958: positive gravitropism	2.92E-02
130	GO:0046323: glucose import	2.92E-02
131	GO:0009741: response to brassinosteroid	2.92E-02
132	GO:0010268: brassinosteroid homeostasis	2.92E-02
133	GO:0048544: recognition of pollen	3.07E-02
134	GO:0048825: cotyledon development	3.23E-02
135	GO:0009058: biosynthetic process	3.25E-02
136	GO:0009845: seed germination	3.33E-02
137	GO:0000302: response to reactive oxygen species	3.39E-02
138	GO:0019761: glucosinolate biosynthetic process	3.55E-02
139	GO:0006633: fatty acid biosynthetic process	3.86E-02
140	GO:0009639: response to red or far red light	3.88E-02
141	GO:0051607: defense response to virus	4.23E-02
142	GO:0009911: positive regulation of flower development	4.40E-02
143	GO:0010029: regulation of seed germination	4.58E-02
144	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	4.58E-02
145	GO:0009627: systemic acquired resistance	4.76E-02
146	GO:0007166: cell surface receptor signaling pathway	4.84E-02
147	GO:0010411: xyloglucan metabolic process	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity	0.00E+00
2	GO:0019144: ADP-sugar diphosphatase activity	0.00E+00
3	GO:0008710: 8-amino-7-oxononanoate synthase activity	0.00E+00
4	GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity	0.00E+00
5	GO:0005290: L-histidine transmembrane transporter activity	3.37E-04
6	GO:0052381: tRNA dimethylallyltransferase activity	3.37E-04
7	GO:0003984: acetolactate synthase activity	3.37E-04
8	GO:0008395: steroid hydroxylase activity	3.37E-04
9	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.37E-04
10	GO:0004830: tryptophan-tRNA ligase activity	3.37E-04
11	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	3.37E-04
12	GO:0042834: peptidoglycan binding	3.37E-04
13	GO:0080042: ADP-glucose pyrophosphohydrolase activity	3.37E-04
14	GO:0008805: carbon-monoxide oxygenase activity	7.34E-04
15	GO:0000064: L-ornithine transmembrane transporter activity	7.34E-04
16	GO:0004412: homoserine dehydrogenase activity	7.34E-04
17	GO:0050736: O-malonyltransferase activity	7.34E-04
18	GO:0009884: cytokinin receptor activity	7.34E-04
19	GO:0050017: L-3-cyanoalanine synthase activity	7.34E-04
20	GO:0080041: ADP-ribose pyrophosphohydrolase activity	7.34E-04
21	GO:0004047: aminomethyltransferase activity	7.34E-04
22	GO:0004766: spermidine synthase activity	7.34E-04
23	GO:0005096: GTPase activator activity	1.15E-03
24	GO:0045548: phenylalanine ammonia-lyase activity	1.19E-03
25	GO:0004148: dihydrolipoyl dehydrogenase activity	1.19E-03
26	GO:0005034: osmosensor activity	1.19E-03
27	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	1.19E-03
28	GO:0015181: arginine transmembrane transporter activity	1.71E-03
29	GO:0017172: cysteine dioxygenase activity	1.71E-03
30	GO:0080031: methyl salicylate esterase activity	1.71E-03
31	GO:0001872: (1->3)-beta-D-glucan binding	1.71E-03
32	GO:0015189: L-lysine transmembrane transporter activity	1.71E-03
33	GO:0004072: aspartate kinase activity	1.71E-03
34	GO:0070628: proteasome binding	2.30E-03
35	GO:0042277: peptide binding	2.30E-03
36	GO:0004845: uracil phosphoribosyltransferase activity	2.30E-03
37	GO:0003785: actin monomer binding	2.93E-03
38	GO:0005471: ATP:ADP antiporter activity	2.93E-03
39	GO:0031593: polyubiquitin binding	3.63E-03
40	GO:0080030: methyl indole-3-acetate esterase activity	3.63E-03
41	GO:0003723: RNA binding	3.85E-03
42	GO:0004849: uridine kinase activity	4.37E-03
43	GO:0004656: procollagen-proline 4-dioxygenase activity	4.37E-03
44	GO:0019900: kinase binding	4.37E-03
45	GO:0004124: cysteine synthase activity	4.37E-03
46	GO:0008235: metalloexopeptidase activity	5.15E-03
47	GO:0016597: amino acid binding	5.63E-03
48	GO:0043022: ribosome binding	5.99E-03
49	GO:0003924: GTPase activity	9.25E-03
50	GO:0004673: protein histidine kinase activity	9.76E-03
51	GO:0004805: trehalose-phosphatase activity	9.76E-03
52	GO:0004519: endonuclease activity	1.05E-02
53	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.08E-02
54	GO:0004177: aminopeptidase activity	1.08E-02
55	GO:0000155: phosphorelay sensor kinase activity	1.30E-02
56	GO:0009982: pseudouridine synthase activity	1.30E-02
57	GO:0043621: protein self-association	1.38E-02
58	GO:0005525: GTP binding	1.53E-02
59	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.66E-02
60	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.66E-02
61	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.66E-02
62	GO:0003690: double-stranded DNA binding	1.79E-02
63	GO:0031418: L-ascorbic acid binding	1.79E-02
64	GO:0043130: ubiquitin binding	1.79E-02
65	GO:0003777: microtubule motor activity	1.91E-02
66	GO:0051087: chaperone binding	1.92E-02
67	GO:0043424: protein histidine kinase binding	1.92E-02
68	GO:0005345: purine nucleobase transmembrane transporter activity	1.92E-02
69	GO:0004812: aminoacyl-tRNA ligase activity	2.62E-02
70	GO:0004527: exonuclease activity	2.92E-02
71	GO:0016740: transferase activity	2.94E-02
72	GO:0010181: FMN binding	3.07E-02
73	GO:0005355: glucose transmembrane transporter activity	3.07E-02
74	GO:0050662: coenzyme binding	3.07E-02
75	GO:0019843: rRNA binding	3.08E-02
76	GO:0016787: hydrolase activity	3.12E-02
77	GO:0019901: protein kinase binding	3.23E-02
78	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.30E-02
79	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.39E-02
80	GO:0030170: pyridoxal phosphate binding	3.42E-02
81	GO:0016491: oxidoreductase activity	3.45E-02
82	GO:0004518: nuclease activity	3.55E-02
83	GO:0000156: phosphorelay response regulator activity	3.72E-02
84	GO:0051015: actin filament binding	3.72E-02
85	GO:0016791: phosphatase activity	3.88E-02
86	GO:0003684: damaged DNA binding	3.88E-02
87	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.96E-02
88	GO:0008483: transaminase activity	4.05E-02
89	GO:0005200: structural constituent of cytoskeleton	4.05E-02
90	GO:0016413: O-acetyltransferase activity	4.23E-02
91	GO:0051213: dioxygenase activity	4.40E-02
92	GO:0030247: polysaccharide binding	4.94E-02
93	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0009537: proplastid	0.00E+00
2	GO:0005948: acetolactate synthase complex	0.00E+00
3	GO:0035452: extrinsic component of plastid membrane	0.00E+00
4	GO:0009507: chloroplast	4.44E-08
5	GO:0009513: etioplast	7.34E-04
6	GO:0009509: chromoplast	1.19E-03
7	GO:0032432: actin filament bundle	1.71E-03
8	GO:0009570: chloroplast stroma	2.25E-03
9	GO:0005871: kinesin complex	2.87E-03
10	GO:0030529: intracellular ribonucleoprotein complex	5.96E-03
11	GO:0009501: amyloplast	5.99E-03
12	GO:0005680: anaphase-promoting complex	7.79E-03
13	GO:0016604: nuclear body	8.75E-03
14	GO:0005884: actin filament	1.08E-02
15	GO:0005938: cell cortex	1.30E-02
16	GO:0016602: CCAAT-binding factor complex	1.30E-02
17	GO:0009574: preprophase band	1.30E-02
18	GO:0030095: chloroplast photosystem II	1.42E-02
19	GO:0042651: thylakoid membrane	1.92E-02
20	GO:0009654: photosystem II oxygen evolving complex	1.92E-02
21	GO:0009532: plastid stroma	2.05E-02
22	GO:0031969: chloroplast membrane	2.11E-02
23	GO:0015629: actin cytoskeleton	2.33E-02
24	GO:0005770: late endosome	2.92E-02
25	GO:0005623: cell	3.16E-02
26	GO:0031965: nuclear membrane	3.23E-02
27	GO:0019898: extrinsic component of membrane	3.23E-02
28	GO:0009535: chloroplast thylakoid membrane	3.38E-02
29	GO:0005759: mitochondrial matrix	3.86E-02