Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G11160

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0018023: peptidyl-lysine trimethylation0.00E+00
2GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process0.00E+00
3GO:1905157: positive regulation of photosynthesis0.00E+00
4GO:0097275: cellular ammonia homeostasis0.00E+00
5GO:1901918: negative regulation of exoribonuclease activity0.00E+00
6GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
7GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
8GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
9GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
10GO:0017038: protein import0.00E+00
11GO:0051924: regulation of calcium ion transport0.00E+00
12GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
13GO:0042821: pyridoxal biosynthetic process0.00E+00
14GO:0042407: cristae formation0.00E+00
15GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
16GO:0042820: vitamin B6 catabolic process0.00E+00
17GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly7.55E-07
18GO:0009658: chloroplast organization3.56E-06
19GO:0032502: developmental process1.27E-05
20GO:1902326: positive regulation of chlorophyll biosynthetic process1.32E-05
21GO:0015979: photosynthesis1.40E-05
22GO:0009657: plastid organization4.91E-05
23GO:0009773: photosynthetic electron transport in photosystem I1.38E-04
24GO:0006021: inositol biosynthetic process1.61E-04
25GO:0010236: plastoquinone biosynthetic process2.46E-04
26GO:0010027: thylakoid membrane organization2.83E-04
27GO:0010190: cytochrome b6f complex assembly3.46E-04
28GO:0009228: thiamine biosynthetic process3.46E-04
29GO:0015995: chlorophyll biosynthetic process3.70E-04
30GO:0009955: adaxial/abaxial pattern specification4.62E-04
31GO:1901259: chloroplast rRNA processing4.62E-04
32GO:0006659: phosphatidylserine biosynthetic process5.49E-04
33GO:1904964: positive regulation of phytol biosynthetic process5.49E-04
34GO:0042371: vitamin K biosynthetic process5.49E-04
35GO:0043686: co-translational protein modification5.49E-04
36GO:0005991: trehalose metabolic process5.49E-04
37GO:0000476: maturation of 4.5S rRNA5.49E-04
38GO:0009443: pyridoxal 5'-phosphate salvage5.49E-04
39GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process5.49E-04
40GO:0000967: rRNA 5'-end processing5.49E-04
41GO:1905039: carboxylic acid transmembrane transport5.49E-04
42GO:1905200: gibberellic acid transmembrane transport5.49E-04
43GO:0080112: seed growth5.49E-04
44GO:1902478: negative regulation of defense response to bacterium, incompatible interaction5.49E-04
45GO:1904966: positive regulation of vitamin E biosynthetic process5.49E-04
46GO:0046620: regulation of organ growth7.35E-04
47GO:0032544: plastid translation8.95E-04
48GO:0019252: starch biosynthetic process1.11E-03
49GO:0071457: cellular response to ozone1.18E-03
50GO:1904143: positive regulation of carotenoid biosynthetic process1.18E-03
51GO:0006568: tryptophan metabolic process1.18E-03
52GO:0010024: phytochromobilin biosynthetic process1.18E-03
53GO:0034470: ncRNA processing1.18E-03
54GO:0018026: peptidyl-lysine monomethylation1.18E-03
55GO:0034755: iron ion transmembrane transport1.18E-03
56GO:0006423: cysteinyl-tRNA aminoacylation1.18E-03
57GO:1901657: glycosyl compound metabolic process1.43E-03
58GO:0019684: photosynthesis, light reaction1.70E-03
59GO:0005977: glycogen metabolic process1.94E-03
60GO:0006954: inflammatory response1.94E-03
61GO:0034051: negative regulation of plant-type hypersensitive response1.94E-03
62GO:0006788: heme oxidation1.94E-03
63GO:0010207: photosystem II assembly2.50E-03
64GO:0016556: mRNA modification2.81E-03
65GO:0006020: inositol metabolic process2.81E-03
66GO:0071484: cellular response to light intensity2.81E-03
67GO:0009152: purine ribonucleotide biosynthetic process2.81E-03
68GO:0046653: tetrahydrofolate metabolic process2.81E-03
69GO:0009052: pentose-phosphate shunt, non-oxidative branch2.81E-03
70GO:0010731: protein glutathionylation2.81E-03
71GO:0010021: amylopectin biosynthetic process3.79E-03
72GO:0010109: regulation of photosynthesis3.79E-03
73GO:0071486: cellular response to high light intensity3.79E-03
74GO:0009765: photosynthesis, light harvesting3.79E-03
75GO:0006109: regulation of carbohydrate metabolic process3.79E-03
76GO:0010107: potassium ion import3.79E-03
77GO:0022622: root system development3.79E-03
78GO:0006546: glycine catabolic process3.79E-03
79GO:0061077: chaperone-mediated protein folding4.23E-03
80GO:0006730: one-carbon metabolic process4.63E-03
81GO:0031365: N-terminal protein amino acid modification4.86E-03
82GO:0080110: sporopollenin biosynthetic process4.86E-03
83GO:0006465: signal peptide processing4.86E-03
84GO:0071493: cellular response to UV-B4.86E-03
85GO:0098719: sodium ion import across plasma membrane4.86E-03
86GO:0006564: L-serine biosynthetic process4.86E-03
87GO:0009643: photosynthetic acclimation6.02E-03
88GO:0046855: inositol phosphate dephosphorylation6.02E-03
89GO:0006751: glutathione catabolic process6.02E-03
90GO:0042549: photosystem II stabilization6.02E-03
91GO:0010264: myo-inositol hexakisphosphate biosynthetic process6.02E-03
92GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway6.02E-03
93GO:1902456: regulation of stomatal opening6.02E-03
94GO:0006086: acetyl-CoA biosynthetic process from pyruvate6.02E-03
95GO:0032973: amino acid export6.02E-03
96GO:0000741: karyogamy6.02E-03
97GO:0055114: oxidation-reduction process6.16E-03
98GO:0006855: drug transmembrane transport6.22E-03
99GO:0010197: polar nucleus fusion6.96E-03
100GO:0009958: positive gravitropism6.96E-03
101GO:0006662: glycerol ether metabolic process6.96E-03
102GO:0010189: vitamin E biosynthetic process7.28E-03
103GO:0080086: stamen filament development7.28E-03
104GO:0042372: phylloquinone biosynthetic process7.28E-03
105GO:0042026: protein refolding7.28E-03
106GO:0006458: 'de novo' protein folding7.28E-03
107GO:0048280: vesicle fusion with Golgi apparatus7.28E-03
108GO:0009646: response to absence of light7.49E-03
109GO:0009791: post-embryonic development8.04E-03
110GO:0032880: regulation of protein localization8.61E-03
111GO:0009772: photosynthetic electron transport in photosystem II8.61E-03
112GO:0043090: amino acid import8.61E-03
113GO:0009645: response to low light intensity stimulus8.61E-03
114GO:0009769: photosynthesis, light harvesting in photosystem II8.61E-03
115GO:0010583: response to cyclopentenone9.21E-03
116GO:0070413: trehalose metabolism in response to stress1.00E-02
117GO:0055075: potassium ion homeostasis1.00E-02
118GO:0052543: callose deposition in cell wall1.00E-02
119GO:0048564: photosystem I assembly1.00E-02
120GO:0009690: cytokinin metabolic process1.00E-02
121GO:0006605: protein targeting1.00E-02
122GO:0042255: ribosome assembly1.00E-02
123GO:0010078: maintenance of root meristem identity1.00E-02
124GO:0006353: DNA-templated transcription, termination1.00E-02
125GO:0006810: transport1.06E-02
126GO:0005975: carbohydrate metabolic process1.14E-02
127GO:0043562: cellular response to nitrogen levels1.15E-02
128GO:0017004: cytochrome complex assembly1.15E-02
129GO:0071482: cellular response to light stimulus1.15E-02
130GO:0019430: removal of superoxide radicals1.15E-02
131GO:0009742: brassinosteroid mediated signaling pathway1.27E-02
132GO:0046685: response to arsenic-containing substance1.31E-02
133GO:0009821: alkaloid biosynthetic process1.31E-02
134GO:0080144: amino acid homeostasis1.31E-02
135GO:0090333: regulation of stomatal closure1.31E-02
136GO:0046916: cellular transition metal ion homeostasis1.31E-02
137GO:0051453: regulation of intracellular pH1.48E-02
138GO:0005982: starch metabolic process1.48E-02
139GO:0009638: phototropism1.48E-02
140GO:0043067: regulation of programmed cell death1.48E-02
141GO:0006779: porphyrin-containing compound biosynthetic process1.48E-02
142GO:0018298: protein-chromophore linkage1.64E-02
143GO:0045036: protein targeting to chloroplast1.65E-02
144GO:0009641: shade avoidance1.65E-02
145GO:0006896: Golgi to vacuole transport1.65E-02
146GO:0006782: protoporphyrinogen IX biosynthetic process1.65E-02
147GO:0006415: translational termination1.83E-02
148GO:0018119: peptidyl-cysteine S-nitrosylation1.83E-02
149GO:0009684: indoleacetic acid biosynthetic process1.83E-02
150GO:0010015: root morphogenesis1.83E-02
151GO:0009089: lysine biosynthetic process via diaminopimelate1.83E-02
152GO:0043085: positive regulation of catalytic activity1.83E-02
153GO:0015770: sucrose transport1.83E-02
154GO:0006879: cellular iron ion homeostasis1.83E-02
155GO:0048527: lateral root development1.90E-02
156GO:0006790: sulfur compound metabolic process2.01E-02
157GO:0016024: CDP-diacylglycerol biosynthetic process2.01E-02
158GO:0006413: translational initiation2.16E-02
159GO:0034599: cellular response to oxidative stress2.18E-02
160GO:0009767: photosynthetic electron transport chain2.20E-02
161GO:0010588: cotyledon vascular tissue pattern formation2.20E-02
162GO:2000012: regulation of auxin polar transport2.20E-02
163GO:0010628: positive regulation of gene expression2.20E-02
164GO:0048467: gynoecium development2.40E-02
165GO:0010143: cutin biosynthetic process2.40E-02
166GO:0010030: positive regulation of seed germination2.61E-02
167GO:0046854: phosphatidylinositol phosphorylation2.61E-02
168GO:0019853: L-ascorbic acid biosynthetic process2.61E-02
169GO:0009901: anther dehiscence2.61E-02
170GO:0010114: response to red light2.69E-02
171GO:0051707: response to other organism2.69E-02
172GO:0005992: trehalose biosynthetic process3.03E-02
173GO:0080147: root hair cell development3.03E-02
174GO:0019953: sexual reproduction3.25E-02
175GO:0006418: tRNA aminoacylation for protein translation3.25E-02
176GO:0009768: photosynthesis, light harvesting in photosystem I3.25E-02
177GO:0019915: lipid storage3.48E-02
178GO:0009269: response to desiccation3.48E-02
179GO:0016114: terpenoid biosynthetic process3.48E-02
180GO:0031348: negative regulation of defense response3.71E-02
181GO:0030245: cellulose catabolic process3.71E-02
182GO:0016226: iron-sulfur cluster assembly3.71E-02
183GO:0051603: proteolysis involved in cellular protein catabolic process3.74E-02
184GO:0006012: galactose metabolic process3.95E-02
185GO:0009686: gibberellin biosynthetic process3.95E-02
186GO:0009306: protein secretion4.19E-02
187GO:0010584: pollen exine formation4.19E-02
188GO:0009561: megagametogenesis4.19E-02
189GO:0048367: shoot system development4.41E-02
190GO:0016117: carotenoid biosynthetic process4.44E-02
191GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.44E-02
192GO:0008284: positive regulation of cell proliferation4.44E-02
193GO:0042147: retrograde transport, endosome to Golgi4.44E-02
194GO:0010087: phloem or xylem histogenesis4.69E-02
195GO:0042631: cellular response to water deprivation4.69E-02
196GO:0080022: primary root development4.69E-02
197GO:0010182: sugar mediated signaling pathway4.94E-02
198GO:0009741: response to brassinosteroid4.94E-02
199GO:0010268: brassinosteroid homeostasis4.94E-02
200GO:0006885: regulation of pH4.94E-02
201GO:0071472: cellular response to salt stress4.94E-02
202GO:0048366: leaf development4.95E-02
RankGO TermAdjusted P value
1GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
2GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
3GO:0010349: L-galactose dehydrogenase activity0.00E+00
4GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
5GO:0090711: FMN hydrolase activity0.00E+00
6GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
7GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
8GO:0004822: isoleucine-tRNA ligase activity0.00E+00
9GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.15E-06
10GO:0009011: starch synthase activity1.61E-04
11GO:0005528: FK506 binding3.81E-04
12GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity5.49E-04
13GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity5.49E-04
14GO:0004425: indole-3-glycerol-phosphate synthase activity5.49E-04
15GO:1905201: gibberellin transmembrane transporter activity5.49E-04
16GO:0051777: ent-kaurenoate oxidase activity5.49E-04
17GO:0004856: xylulokinase activity5.49E-04
18GO:0005080: protein kinase C binding5.49E-04
19GO:0042586: peptide deformylase activity5.49E-04
20GO:0004033: aldo-keto reductase (NADP) activity7.35E-04
21GO:0019843: rRNA binding7.79E-04
22GO:0003839: gamma-glutamylcyclotransferase activity1.18E-03
23GO:0004326: tetrahydrofolylpolyglutamate synthase activity1.18E-03
24GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity1.18E-03
25GO:0004617: phosphoglycerate dehydrogenase activity1.18E-03
26GO:0004047: aminomethyltransferase activity1.18E-03
27GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity1.18E-03
28GO:0052832: inositol monophosphate 3-phosphatase activity1.18E-03
29GO:0033201: alpha-1,4-glucan synthase activity1.18E-03
30GO:0004817: cysteine-tRNA ligase activity1.18E-03
31GO:0080097: L-tryptophan:pyruvate aminotransferase activity1.18E-03
32GO:0016630: protochlorophyllide reductase activity1.18E-03
33GO:0008934: inositol monophosphate 1-phosphatase activity1.18E-03
34GO:0019156: isoamylase activity1.18E-03
35GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.18E-03
36GO:0052833: inositol monophosphate 4-phosphatase activity1.18E-03
37GO:0004512: inositol-3-phosphate synthase activity1.18E-03
38GO:0048038: quinone binding1.21E-03
39GO:0015386: potassium:proton antiporter activity1.70E-03
40GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.94E-03
41GO:0070402: NADPH binding1.94E-03
42GO:0008864: formyltetrahydrofolate deformylase activity1.94E-03
43GO:0015462: ATPase-coupled protein transmembrane transporter activity1.94E-03
44GO:0004373: glycogen (starch) synthase activity1.94E-03
45GO:0003913: DNA photolyase activity1.94E-03
46GO:0002161: aminoacyl-tRNA editing activity1.94E-03
47GO:0004148: dihydrolipoyl dehydrogenase activity1.94E-03
48GO:0004751: ribose-5-phosphate isomerase activity1.94E-03
49GO:0045174: glutathione dehydrogenase (ascorbate) activity1.94E-03
50GO:0031072: heat shock protein binding2.22E-03
51GO:0102483: scopolin beta-glucosidase activity2.39E-03
52GO:0016851: magnesium chelatase activity2.81E-03
53GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity2.81E-03
54GO:0016149: translation release factor activity, codon specific2.81E-03
55GO:0022890: inorganic cation transmembrane transporter activity2.81E-03
56GO:0015238: drug transmembrane transporter activity2.90E-03
57GO:0016788: hydrolase activity, acting on ester bonds3.07E-03
58GO:0004659: prenyltransferase activity3.79E-03
59GO:0016279: protein-lysine N-methyltransferase activity3.79E-03
60GO:0004045: aminoacyl-tRNA hydrolase activity3.79E-03
61GO:0080032: methyl jasmonate esterase activity3.79E-03
62GO:0045430: chalcone isomerase activity3.79E-03
63GO:0043495: protein anchor3.79E-03
64GO:0004392: heme oxygenase (decyclizing) activity3.79E-03
65GO:0008422: beta-glucosidase activity4.13E-03
66GO:0003959: NADPH dehydrogenase activity4.86E-03
67GO:0016846: carbon-sulfur lyase activity4.86E-03
68GO:0016773: phosphotransferase activity, alcohol group as acceptor4.86E-03
69GO:0003727: single-stranded RNA binding5.50E-03
70GO:0047134: protein-disulfide reductase activity5.97E-03
71GO:0015081: sodium ion transmembrane transporter activity6.02E-03
72GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity6.02E-03
73GO:0008200: ion channel inhibitor activity6.02E-03
74GO:0080030: methyl indole-3-acetate esterase activity6.02E-03
75GO:0004556: alpha-amylase activity6.02E-03
76GO:0004462: lactoylglutathione lyase activity6.02E-03
77GO:0004366: glycerol-3-phosphate O-acyltransferase activity6.02E-03
78GO:0004784: superoxide dismutase activity6.02E-03
79GO:0003755: peptidyl-prolyl cis-trans isomerase activity6.22E-03
80GO:0004723: calcium-dependent protein serine/threonine phosphatase activity7.28E-03
81GO:0008195: phosphatidate phosphatase activity7.28E-03
82GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity7.28E-03
83GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity7.28E-03
84GO:0004791: thioredoxin-disulfide reductase activity7.49E-03
85GO:0019899: enzyme binding8.61E-03
86GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor9.82E-03
87GO:0016791: phosphatase activity1.05E-02
88GO:0008135: translation factor activity, RNA binding1.15E-02
89GO:0046914: transition metal ion binding1.15E-02
90GO:0051082: unfolded protein binding1.18E-02
91GO:0003747: translation release factor activity1.31E-02
92GO:0016168: chlorophyll binding1.32E-02
93GO:0005215: transporter activity1.44E-02
94GO:0016844: strictosidine synthase activity1.48E-02
95GO:0005381: iron ion transmembrane transporter activity1.48E-02
96GO:0008047: enzyme activator activity1.65E-02
97GO:0015020: glucuronosyltransferase activity1.65E-02
98GO:0008559: xenobiotic-transporting ATPase activity1.83E-02
99GO:0044183: protein binding involved in protein folding1.83E-02
100GO:0008515: sucrose transmembrane transporter activity1.83E-02
101GO:0008378: galactosyltransferase activity2.01E-02
102GO:0000049: tRNA binding2.01E-02
103GO:0016491: oxidoreductase activity2.07E-02
104GO:0003746: translation elongation factor activity2.08E-02
105GO:0003993: acid phosphatase activity2.18E-02
106GO:0004089: carbonate dehydratase activity2.20E-02
107GO:0003725: double-stranded RNA binding2.20E-02
108GO:0004022: alcohol dehydrogenase (NAD) activity2.20E-02
109GO:0015297: antiporter activity2.22E-02
110GO:0004712: protein serine/threonine/tyrosine kinase activity2.27E-02
111GO:0008266: poly(U) RNA binding2.40E-02
112GO:0008083: growth factor activity2.40E-02
113GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.40E-02
114GO:0051119: sugar transmembrane transporter activity2.61E-02
115GO:0004185: serine-type carboxypeptidase activity2.69E-02
116GO:0031409: pigment binding2.82E-02
117GO:0003743: translation initiation factor activity2.86E-02
118GO:0043621: protein self-association2.91E-02
119GO:0035091: phosphatidylinositol binding2.91E-02
120GO:0051536: iron-sulfur cluster binding3.03E-02
121GO:0004857: enzyme inhibitor activity3.03E-02
122GO:0015079: potassium ion transmembrane transporter activity3.25E-02
123GO:0003690: double-stranded DNA binding3.74E-02
124GO:0008168: methyltransferase activity3.87E-02
125GO:0022891: substrate-specific transmembrane transporter activity3.95E-02
126GO:0008810: cellulase activity3.95E-02
127GO:0004812: aminoacyl-tRNA ligase activity4.44E-02
128GO:0003713: transcription coactivator activity4.94E-02
RankGO TermAdjusted P value
1GO:0009571: proplastid stroma0.00E+00
2GO:0009507: chloroplast1.24E-40
3GO:0009535: chloroplast thylakoid membrane6.32E-25
4GO:0009570: chloroplast stroma7.08E-22
5GO:0009941: chloroplast envelope6.38E-12
6GO:0009579: thylakoid1.01E-09
7GO:0009534: chloroplast thylakoid1.09E-09
8GO:0009543: chloroplast thylakoid lumen1.40E-07
9GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.72E-06
10GO:0009295: nucleoid2.03E-05
11GO:0009654: photosystem II oxygen evolving complex3.20E-05
12GO:0031969: chloroplast membrane5.72E-05
13GO:0031977: thylakoid lumen1.24E-04
14GO:0009508: plastid chromosome2.04E-04
15GO:0005787: signal peptidase complex5.49E-04
16GO:0009344: nitrite reductase complex [NAD(P)H]5.49E-04
17GO:0009547: plastid ribosome5.49E-04
18GO:0009523: photosystem II1.11E-03
19GO:0019898: extrinsic component of membrane1.11E-03
20GO:0033281: TAT protein transport complex1.94E-03
21GO:0010007: magnesium chelatase complex1.94E-03
22GO:0030095: chloroplast photosystem II2.50E-03
23GO:0030658: transport vesicle membrane2.81E-03
24GO:0009517: PSII associated light-harvesting complex II3.79E-03
25GO:0042651: thylakoid membrane3.84E-03
26GO:0009840: chloroplastic endopeptidase Clp complex7.28E-03
27GO:0009522: photosystem I7.49E-03
28GO:0012507: ER to Golgi transport vesicle membrane1.00E-02
29GO:0009501: amyloplast1.00E-02
30GO:0010319: stromule1.11E-02
31GO:0009539: photosystem II reaction center1.15E-02
32GO:0005763: mitochondrial small ribosomal subunit1.31E-02
33GO:0016021: integral component of membrane1.46E-02
34GO:0009707: chloroplast outer membrane1.64E-02
35GO:0000311: plastid large ribosomal subunit2.01E-02
36GO:0031902: late endosome membrane2.48E-02
37GO:0016020: membrane2.51E-02
38GO:0030076: light-harvesting complex2.61E-02
39GO:0005840: ribosome3.28E-02
40GO:0015935: small ribosomal subunit3.48E-02
41GO:0009532: plastid stroma3.48E-02
42GO:0005770: late endosome4.94E-02
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Gene type



Gene DE type