co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G10540

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009583: detection of light stimulus	0.00E+00
2	GO:0071000: response to magnetism	0.00E+00
3	GO:0000372: Group I intron splicing	0.00E+00
4	GO:0043972: histone H3-K23 acetylation	0.00E+00
5	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
6	GO:0033528: S-methylmethionine cycle	0.00E+00
7	GO:0044154: histone H3-K14 acetylation	0.00E+00
8	GO:0043971: histone H3-K18 acetylation	5.03E-05
9	GO:0048657: anther wall tapetum cell differentiation	5.03E-05
10	GO:0072387: flavin adenine dinucleotide metabolic process	5.03E-05
11	GO:0010266: response to vitamin B1	5.03E-05
12	GO:0043609: regulation of carbon utilization	5.03E-05
13	GO:0000066: mitochondrial ornithine transport	5.03E-05
14	GO:1901529: positive regulation of anion channel activity	1.23E-04
15	GO:0006435: threonyl-tRNA aminoacylation	1.23E-04
16	GO:0080005: photosystem stoichiometry adjustment	1.23E-04
17	GO:0010617: circadian regulation of calcium ion oscillation	1.23E-04
18	GO:0099402: plant organ development	1.23E-04
19	GO:0010343: singlet oxygen-mediated programmed cell death	1.23E-04
20	GO:1902448: positive regulation of shade avoidance	2.11E-04
21	GO:0006000: fructose metabolic process	2.11E-04
22	GO:1901672: positive regulation of systemic acquired resistance	2.11E-04
23	GO:0016045: detection of bacterium	2.11E-04
24	GO:0045493: xylan catabolic process	2.11E-04
25	GO:0009800: cinnamic acid biosynthetic process	3.09E-04
26	GO:1901332: negative regulation of lateral root development	3.09E-04
27	GO:1902347: response to strigolactone	4.15E-04
28	GO:0010117: photoprotection	5.26E-04
29	GO:0046283: anthocyanin-containing compound metabolic process	5.26E-04
30	GO:0009229: thiamine diphosphate biosynthetic process	5.26E-04
31	GO:1901371: regulation of leaf morphogenesis	6.44E-04
32	GO:0006559: L-phenylalanine catabolic process	6.44E-04
33	GO:0009228: thiamine biosynthetic process	6.44E-04
34	GO:0060918: auxin transport	6.44E-04
35	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	7.68E-04
36	GO:0010310: regulation of hydrogen peroxide metabolic process	7.68E-04
37	GO:0051510: regulation of unidimensional cell growth	8.97E-04
38	GO:0006353: DNA-templated transcription, termination	1.03E-03
39	GO:0045010: actin nucleation	1.03E-03
40	GO:0009827: plant-type cell wall modification	1.17E-03
41	GO:0044030: regulation of DNA methylation	1.17E-03
42	GO:0006002: fructose 6-phosphate metabolic process	1.17E-03
43	GO:0022900: electron transport chain	1.17E-03
44	GO:0051603: proteolysis involved in cellular protein catabolic process	1.32E-03
45	GO:0090305: nucleic acid phosphodiester bond hydrolysis	1.32E-03
46	GO:0000373: Group II intron splicing	1.32E-03
47	GO:0009086: methionine biosynthetic process	1.47E-03
48	GO:1900426: positive regulation of defense response to bacterium	1.47E-03
49	GO:0009638: phototropism	1.47E-03
50	GO:0006508: proteolysis	1.50E-03
51	GO:0006259: DNA metabolic process	1.63E-03
52	GO:0006265: DNA topological change	1.79E-03
53	GO:0009785: blue light signaling pathway	2.14E-03
54	GO:0030036: actin cytoskeleton organization	2.14E-03
55	GO:0010075: regulation of meristem growth	2.14E-03
56	GO:0009767: photosynthetic electron transport chain	2.14E-03
57	GO:0080188: RNA-directed DNA methylation	2.50E-03
58	GO:0090351: seedling development	2.50E-03
59	GO:0006289: nucleotide-excision repair	2.88E-03
60	GO:2000377: regulation of reactive oxygen species metabolic process	2.88E-03
61	GO:0010073: meristem maintenance	3.08E-03
62	GO:0006825: copper ion transport	3.08E-03
63	GO:0015992: proton transport	3.29E-03
64	GO:0006730: one-carbon metabolic process	3.50E-03
65	GO:0010584: pollen exine formation	3.93E-03
66	GO:0009793: embryo development ending in seed dormancy	4.15E-03
67	GO:0010118: stomatal movement	4.37E-03
68	GO:0045489: pectin biosynthetic process	4.60E-03
69	GO:0048868: pollen tube development	4.60E-03
70	GO:0046323: glucose import	4.60E-03
71	GO:0010268: brassinosteroid homeostasis	4.60E-03
72	GO:0007018: microtubule-based movement	4.83E-03
73	GO:0042752: regulation of circadian rhythm	4.83E-03
74	GO:0007059: chromosome segregation	4.83E-03
75	GO:0009646: response to absence of light	4.83E-03
76	GO:0016132: brassinosteroid biosynthetic process	5.32E-03
77	GO:0010090: trichome morphogenesis	5.81E-03
78	GO:0016125: sterol metabolic process	6.07E-03
79	GO:0046777: protein autophosphorylation	6.26E-03
80	GO:0009911: positive regulation of flower development	6.85E-03
81	GO:0010411: xyloglucan metabolic process	7.68E-03
82	GO:0030244: cellulose biosynthetic process	8.24E-03
83	GO:0018298: protein-chromophore linkage	8.24E-03
84	GO:0006499: N-terminal protein myristoylation	8.82E-03
85	GO:0010218: response to far red light	8.82E-03
86	GO:0009834: plant-type secondary cell wall biogenesis	8.82E-03
87	GO:0006397: mRNA processing	9.01E-03
88	GO:0009637: response to blue light	9.73E-03
89	GO:0009853: photorespiration	9.73E-03
90	GO:0006839: mitochondrial transport	1.07E-02
91	GO:0009640: photomorphogenesis	1.16E-02
92	GO:0010114: response to red light	1.16E-02
93	GO:0009644: response to high light intensity	1.23E-02
94	GO:0010224: response to UV-B	1.47E-02
95	GO:0009553: embryo sac development	1.80E-02
96	GO:0042744: hydrogen peroxide catabolic process	2.37E-02
97	GO:0009790: embryo development	2.41E-02
98	GO:0040008: regulation of growth	2.63E-02
99	GO:0007623: circadian rhythm	2.72E-02
100	GO:0009451: RNA modification	2.76E-02
101	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.95E-02
102	GO:0006470: protein dephosphorylation	2.99E-02
103	GO:0007166: cell surface receptor signaling pathway	2.99E-02
104	GO:0010468: regulation of gene expression	3.08E-02
105	GO:0009826: unidimensional cell growth	3.61E-02
106	GO:0080167: response to karrikin	4.32E-02
107	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.43E-02

Rank	GO Term	Adjusted P value
1	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
2	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
3	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
4	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
5	GO:0005290: L-histidine transmembrane transporter activity	5.03E-05
6	GO:0004008: copper-exporting ATPase activity	5.03E-05
7	GO:0046872: metal ion binding	6.72E-05
8	GO:0000064: L-ornithine transmembrane transporter activity	1.23E-04
9	GO:0004829: threonine-tRNA ligase activity	1.23E-04
10	GO:0080041: ADP-ribose pyrophosphohydrolase activity	1.23E-04
11	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	1.23E-04
12	GO:0008898: S-adenosylmethionine-homocysteine S-methyltransferase activity	1.23E-04
13	GO:0045548: phenylalanine ammonia-lyase activity	2.11E-04
14	GO:0004848: ureidoglycolate hydrolase activity	2.11E-04
15	GO:0032549: ribonucleoside binding	2.11E-04
16	GO:0016805: dipeptidase activity	2.11E-04
17	GO:0015181: arginine transmembrane transporter activity	3.09E-04
18	GO:0009678: hydrogen-translocating pyrophosphatase activity	3.09E-04
19	GO:0009882: blue light photoreceptor activity	3.09E-04
20	GO:0015189: L-lysine transmembrane transporter activity	3.09E-04
21	GO:0005354: galactose transmembrane transporter activity	3.09E-04
22	GO:0010385: double-stranded methylated DNA binding	4.15E-04
23	GO:0008237: metallopeptidase activity	4.15E-04
24	GO:0070628: proteasome binding	4.15E-04
25	GO:0009044: xylan 1,4-beta-xylosidase activity	4.15E-04
26	GO:0046556: alpha-L-arabinofuranosidase activity	4.15E-04
27	GO:0031593: polyubiquitin binding	6.44E-04
28	GO:2001070: starch binding	6.44E-04
29	GO:0004222: metalloendopeptidase activity	6.61E-04
30	GO:0003730: mRNA 3'-UTR binding	7.68E-04
31	GO:0004656: procollagen-proline 4-dioxygenase activity	7.68E-04
32	GO:0004427: inorganic diphosphatase activity	8.97E-04
33	GO:0004185: serine-type carboxypeptidase activity	9.61E-04
34	GO:0005375: copper ion transmembrane transporter activity	1.17E-03
35	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	1.17E-03
36	GO:0071949: FAD binding	1.32E-03
37	GO:0001054: RNA polymerase I activity	1.79E-03
38	GO:0004672: protein kinase activity	2.08E-03
39	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	2.14E-03
40	GO:0051536: iron-sulfur cluster binding	2.88E-03
41	GO:0031418: L-ascorbic acid binding	2.88E-03
42	GO:0043130: ubiquitin binding	2.88E-03
43	GO:0005524: ATP binding	3.04E-03
44	GO:0004176: ATP-dependent peptidase activity	3.29E-03
45	GO:0004402: histone acetyltransferase activity	4.37E-03
46	GO:0008536: Ran GTPase binding	4.60E-03
47	GO:0005355: glucose transmembrane transporter activity	4.83E-03
48	GO:0019901: protein kinase binding	5.07E-03
49	GO:0004518: nuclease activity	5.56E-03
50	GO:0003684: damaged DNA binding	6.07E-03
51	GO:0016413: O-acetyltransferase activity	6.59E-03
52	GO:0004721: phosphoprotein phosphatase activity	7.68E-03
53	GO:0042393: histone binding	1.07E-02
54	GO:0051539: 4 iron, 4 sulfur cluster binding	1.07E-02
55	GO:0051537: 2 iron, 2 sulfur cluster binding	1.23E-02
56	GO:0016887: ATPase activity	1.34E-02
57	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.44E-02
58	GO:0003777: microtubule motor activity	1.54E-02
59	GO:0030246: carbohydrate binding	2.07E-02
60	GO:0019843: rRNA binding	2.16E-02
61	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.20E-02
62	GO:0016829: lyase activity	2.29E-02
63	GO:0015144: carbohydrate transmembrane transporter activity	2.46E-02
64	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.59E-02
65	GO:0005351: sugar:proton symporter activity	2.67E-02
66	GO:0008017: microtubule binding	2.81E-02
67	GO:0005506: iron ion binding	3.07E-02
68	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.23E-02
69	GO:0042802: identical protein binding	3.23E-02
70	GO:0004601: peroxidase activity	3.71E-02
71	GO:0003682: chromatin binding	3.86E-02
72	GO:0004497: monooxygenase activity	4.32E-02
73	GO:0020037: heme binding	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0016605: PML body	2.11E-04
2	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	4.15E-04
3	GO:0031209: SCAR complex	6.44E-04
4	GO:0005736: DNA-directed RNA polymerase I complex	1.32E-03
5	GO:0016604: nuclear body	1.47E-03
6	GO:0009532: plastid stroma	3.29E-03
7	GO:0005871: kinesin complex	4.15E-03
8	GO:0009507: chloroplast	4.86E-03
9	GO:0009295: nucleoid	6.33E-03
10	GO:0030529: intracellular ribonucleoprotein complex	6.85E-03
11	GO:0005773: vacuole	1.46E-02
12	GO:0016021: integral component of membrane	1.73E-02
13	GO:0009706: chloroplast inner membrane	1.84E-02
14	GO:0009570: chloroplast stroma	2.00E-02
15	GO:0005802: trans-Golgi network	2.47E-02
16	GO:0005759: mitochondrial matrix	2.54E-02
17	GO:0005768: endosome	2.81E-02
18	GO:0009536: plastid	3.82E-02
19	GO:0005874: microtubule	4.22E-02
20	GO:0031969: chloroplast membrane	4.32E-02
21	GO:0005886: plasma membrane	4.37E-02
22	GO:0005789: endoplasmic reticulum membrane	4.74E-02