Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G10180

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1905157: positive regulation of photosynthesis0.00E+00
2GO:0097275: cellular ammonia homeostasis0.00E+00
3GO:1901918: negative regulation of exoribonuclease activity0.00E+00
4GO:0051924: regulation of calcium ion transport0.00E+00
5GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
6GO:0016118: carotenoid catabolic process0.00E+00
7GO:0046471: phosphatidylglycerol metabolic process0.00E+00
8GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process0.00E+00
9GO:0009773: photosynthetic electron transport in photosystem I3.83E-07
10GO:0015995: chlorophyll biosynthetic process2.10E-06
11GO:0055114: oxidation-reduction process5.65E-06
12GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.31E-05
13GO:0015994: chlorophyll metabolic process4.19E-05
14GO:0010207: photosystem II assembly4.25E-05
15GO:0006636: unsaturated fatty acid biosynthetic process6.08E-05
16GO:0009768: photosynthesis, light harvesting in photosystem I8.32E-05
17GO:0042549: photosystem II stabilization9.77E-05
18GO:0015979: photosynthesis1.21E-04
19GO:1901259: chloroplast rRNA processing1.34E-04
20GO:0010114: response to red light1.37E-04
21GO:0010028: xanthophyll cycle2.46E-04
22GO:0034337: RNA folding2.46E-04
23GO:0000023: maltose metabolic process2.46E-04
24GO:0000025: maltose catabolic process2.46E-04
25GO:0080112: seed growth2.46E-04
26GO:0005980: glycogen catabolic process2.46E-04
27GO:0009090: homoserine biosynthetic process2.46E-04
28GO:1905039: carboxylic acid transmembrane transport2.46E-04
29GO:1905200: gibberellic acid transmembrane transport2.46E-04
30GO:0071277: cellular response to calcium ion2.46E-04
31GO:0046467: membrane lipid biosynthetic process2.46E-04
32GO:0009657: plastid organization2.78E-04
33GO:0032544: plastid translation2.78E-04
34GO:1901657: glycosyl compound metabolic process3.17E-04
35GO:0006098: pentose-phosphate shunt3.36E-04
36GO:0005982: starch metabolic process3.99E-04
37GO:0016122: xanthophyll metabolic process5.44E-04
38GO:0016121: carotene catabolic process5.44E-04
39GO:0080029: cellular response to boron-containing substance levels5.44E-04
40GO:0006898: receptor-mediated endocytosis5.44E-04
41GO:0016124: xanthophyll catabolic process5.44E-04
42GO:0071457: cellular response to ozone5.44E-04
43GO:0005976: polysaccharide metabolic process5.44E-04
44GO:0010353: response to trehalose5.44E-04
45GO:0005983: starch catabolic process6.18E-04
46GO:0006094: gluconeogenesis7.00E-04
47GO:0090391: granum assembly8.83E-04
48GO:0006518: peptide metabolic process8.83E-04
49GO:0032259: methylation9.67E-04
50GO:0046713: borate transport1.26E-03
51GO:0009067: aspartate family amino acid biosynthetic process1.26E-03
52GO:0006020: inositol metabolic process1.26E-03
53GO:0071484: cellular response to light intensity1.26E-03
54GO:0009152: purine ribonucleotide biosynthetic process1.26E-03
55GO:0046653: tetrahydrofolate metabolic process1.26E-03
56GO:0009052: pentose-phosphate shunt, non-oxidative branch1.26E-03
57GO:0071486: cellular response to high light intensity1.68E-03
58GO:0009765: photosynthesis, light harvesting1.68E-03
59GO:0006021: inositol biosynthetic process1.68E-03
60GO:0071483: cellular response to blue light1.68E-03
61GO:0010021: amylopectin biosynthetic process1.68E-03
62GO:0006810: transport1.95E-03
63GO:0071493: cellular response to UV-B2.15E-03
64GO:0006656: phosphatidylcholine biosynthetic process2.15E-03
65GO:0006564: L-serine biosynthetic process2.15E-03
66GO:0009904: chloroplast accumulation movement2.15E-03
67GO:0019252: starch biosynthetic process2.44E-03
68GO:0010304: PSII associated light-harvesting complex II catabolic process2.65E-03
69GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.65E-03
70GO:1902456: regulation of stomatal opening2.65E-03
71GO:0009228: thiamine biosynthetic process2.65E-03
72GO:0046855: inositol phosphate dephosphorylation2.65E-03
73GO:0010190: cytochrome b6f complex assembly2.65E-03
74GO:0009643: photosynthetic acclimation2.65E-03
75GO:0009955: adaxial/abaxial pattern specification3.18E-03
76GO:0009903: chloroplast avoidance movement3.18E-03
77GO:0009088: threonine biosynthetic process3.18E-03
78GO:0009610: response to symbiotic fungus3.75E-03
79GO:0009395: phospholipid catabolic process3.75E-03
80GO:0009772: photosynthetic electron transport in photosystem II3.75E-03
81GO:0010196: nonphotochemical quenching3.75E-03
82GO:0009769: photosynthesis, light harvesting in photosystem II3.75E-03
83GO:0009645: response to low light intensity stimulus3.75E-03
84GO:0052543: callose deposition in cell wall4.35E-03
85GO:0005978: glycogen biosynthetic process4.35E-03
86GO:0009642: response to light intensity4.35E-03
87GO:0010078: maintenance of root meristem identity4.35E-03
88GO:0009704: de-etiolation4.35E-03
89GO:0018298: protein-chromophore linkage4.90E-03
90GO:0043562: cellular response to nitrogen levels4.98E-03
91GO:0015996: chlorophyll catabolic process4.98E-03
92GO:0019430: removal of superoxide radicals4.98E-03
93GO:0010218: response to far red light5.41E-03
94GO:0009821: alkaloid biosynthetic process5.65E-03
95GO:0010206: photosystem II repair5.65E-03
96GO:0090333: regulation of stomatal closure5.65E-03
97GO:0006754: ATP biosynthetic process5.65E-03
98GO:0009637: response to blue light6.21E-03
99GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process6.33E-03
100GO:0010205: photoinhibition6.33E-03
101GO:0009086: methionine biosynthetic process6.33E-03
102GO:0034599: cellular response to oxidative stress6.50E-03
103GO:0005975: carbohydrate metabolic process6.62E-03
104GO:0009641: shade avoidance7.06E-03
105GO:0009684: indoleacetic acid biosynthetic process7.80E-03
106GO:0009089: lysine biosynthetic process via diaminopimelate7.80E-03
107GO:0015770: sucrose transport7.80E-03
108GO:0006415: translational termination7.80E-03
109GO:0043085: positive regulation of catalytic activity7.80E-03
110GO:0006790: sulfur compound metabolic process8.58E-03
111GO:0018107: peptidyl-threonine phosphorylation9.38E-03
112GO:0010588: cotyledon vascular tissue pattern formation9.38E-03
113GO:0030048: actin filament-based movement9.38E-03
114GO:0009266: response to temperature stimulus1.02E-02
115GO:0048467: gynoecium development1.02E-02
116GO:0007015: actin filament organization1.02E-02
117GO:0010223: secondary shoot formation1.02E-02
118GO:0046854: phosphatidylinositol phosphorylation1.11E-02
119GO:0009901: anther dehiscence1.11E-02
120GO:0080167: response to karrikin1.17E-02
121GO:0006096: glycolytic process1.28E-02
122GO:0080147: root hair cell development1.29E-02
123GO:0019915: lipid storage1.47E-02
124GO:0061077: chaperone-mediated protein folding1.47E-02
125GO:0009269: response to desiccation1.47E-02
126GO:0016114: terpenoid biosynthetic process1.47E-02
127GO:0016226: iron-sulfur cluster assembly1.57E-02
128GO:0030433: ubiquitin-dependent ERAD pathway1.57E-02
129GO:0016117: carotenoid biosynthetic process1.88E-02
130GO:0010087: phloem or xylem histogenesis1.99E-02
131GO:0080022: primary root development1.99E-02
132GO:0000413: protein peptidyl-prolyl isomerization1.99E-02
133GO:0009058: biosynthetic process2.04E-02
134GO:0009741: response to brassinosteroid2.09E-02
135GO:0009958: positive gravitropism2.09E-02
136GO:0071472: cellular response to salt stress2.09E-02
137GO:0006662: glycerol ether metabolic process2.09E-02
138GO:0046686: response to cadmium ion2.10E-02
139GO:0015986: ATP synthesis coupled proton transport2.21E-02
140GO:0009851: auxin biosynthetic process2.32E-02
141GO:0048825: cotyledon development2.32E-02
142GO:0006633: fatty acid biosynthetic process2.43E-02
143GO:0032502: developmental process2.55E-02
144GO:0009630: gravitropism2.55E-02
145GO:0010027: thylakoid membrane organization3.16E-02
146GO:0042128: nitrate assimilation3.42E-02
147GO:0016311: dephosphorylation3.69E-02
148GO:0009817: defense response to fungus, incompatible interaction3.82E-02
149GO:0009813: flavonoid biosynthetic process3.96E-02
150GO:0048527: lateral root development4.24E-02
151GO:0009631: cold acclimation4.24E-02
152GO:0009853: photorespiration4.52E-02
RankGO TermAdjusted P value
1GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity0.00E+00
2GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
3GO:0047668: amygdalin beta-glucosidase activity0.00E+00
4GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
5GO:0080083: beta-gentiobiose beta-glucosidase activity0.00E+00
6GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
7GO:0046422: violaxanthin de-epoxidase activity0.00E+00
8GO:0004567: beta-mannosidase activity0.00E+00
9GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
10GO:0080082: esculin beta-glucosidase activity0.00E+00
11GO:0046408: chlorophyll synthetase activity0.00E+00
12GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor4.19E-05
13GO:0031409: pigment binding6.08E-05
14GO:0004332: fructose-bisphosphate aldolase activity9.77E-05
15GO:0045486: naringenin 3-dioxygenase activity2.46E-04
16GO:0035671: enone reductase activity2.46E-04
17GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity2.46E-04
18GO:0030794: (S)-coclaurine-N-methyltransferase activity2.46E-04
19GO:0080079: cellobiose glucosidase activity2.46E-04
20GO:1905201: gibberellin transmembrane transporter activity2.46E-04
21GO:0050521: alpha-glucan, water dikinase activity2.46E-04
22GO:0008184: glycogen phosphorylase activity2.46E-04
23GO:0004134: 4-alpha-glucanotransferase activity2.46E-04
24GO:0045485: omega-6 fatty acid desaturase activity2.46E-04
25GO:0004645: phosphorylase activity2.46E-04
26GO:0034256: chlorophyll(ide) b reductase activity2.46E-04
27GO:0015168: glycerol transmembrane transporter activity2.46E-04
28GO:0016168: chlorophyll binding4.66E-04
29GO:0102483: scopolin beta-glucosidase activity5.35E-04
30GO:0047746: chlorophyllase activity5.44E-04
31GO:0042389: omega-3 fatty acid desaturase activity5.44E-04
32GO:0010297: heteropolysaccharide binding5.44E-04
33GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity5.44E-04
34GO:0004617: phosphoglycerate dehydrogenase activity5.44E-04
35GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity5.44E-04
36GO:0052832: inositol monophosphate 3-phosphatase activity5.44E-04
37GO:0033201: alpha-1,4-glucan synthase activity5.44E-04
38GO:0018708: thiol S-methyltransferase activity5.44E-04
39GO:0008934: inositol monophosphate 1-phosphatase activity5.44E-04
40GO:0003844: 1,4-alpha-glucan branching enzyme activity5.44E-04
41GO:0052833: inositol monophosphate 4-phosphatase activity5.44E-04
42GO:0004412: homoserine dehydrogenase activity5.44E-04
43GO:0080097: L-tryptophan:pyruvate aminotransferase activity5.44E-04
44GO:0019172: glyoxalase III activity5.44E-04
45GO:0000234: phosphoethanolamine N-methyltransferase activity5.44E-04
46GO:0003993: acid phosphatase activity8.68E-04
47GO:0008864: formyltetrahydrofolate deformylase activity8.83E-04
48GO:0010277: chlorophyllide a oxygenase [overall] activity8.83E-04
49GO:0043169: cation binding8.83E-04
50GO:0004373: glycogen (starch) synthase activity8.83E-04
51GO:0004751: ribose-5-phosphate isomerase activity8.83E-04
52GO:0016742: hydroxymethyl-, formyl- and related transferase activity8.83E-04
53GO:0008422: beta-glucosidase activity9.15E-04
54GO:0051537: 2 iron, 2 sulfur cluster binding1.24E-03
55GO:0004072: aspartate kinase activity1.26E-03
56GO:0019201: nucleotide kinase activity1.26E-03
57GO:0016851: magnesium chelatase activity1.26E-03
58GO:0016149: translation release factor activity, codon specific1.26E-03
59GO:0022890: inorganic cation transmembrane transporter activity1.26E-03
60GO:0046715: borate transmembrane transporter activity1.26E-03
61GO:0016491: oxidoreductase activity1.53E-03
62GO:0009011: starch synthase activity1.68E-03
63GO:0015204: urea transmembrane transporter activity1.68E-03
64GO:0008168: methyltransferase activity1.72E-03
65GO:0016846: carbon-sulfur lyase activity2.15E-03
66GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity2.15E-03
67GO:0048038: quinone binding2.61E-03
68GO:0008200: ion channel inhibitor activity2.65E-03
69GO:2001070: starch binding2.65E-03
70GO:0004784: superoxide dismutase activity2.65E-03
71GO:0004462: lactoylglutathione lyase activity2.65E-03
72GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.18E-03
73GO:0004017: adenylate kinase activity3.18E-03
74GO:0016597: amino acid binding3.55E-03
75GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.64E-03
76GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water4.98E-03
77GO:0003747: translation release factor activity5.65E-03
78GO:0016844: strictosidine synthase activity6.33E-03
79GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity6.33E-03
80GO:0030234: enzyme regulator activity7.06E-03
81GO:0008047: enzyme activator activity7.06E-03
82GO:0047372: acylglycerol lipase activity7.80E-03
83GO:0015386: potassium:proton antiporter activity7.80E-03
84GO:0008515: sucrose transmembrane transporter activity7.80E-03
85GO:0016788: hydrolase activity, acting on ester bonds9.14E-03
86GO:0003755: peptidyl-prolyl cis-trans isomerase activity9.36E-03
87GO:0031072: heat shock protein binding9.38E-03
88GO:0004565: beta-galactosidase activity9.38E-03
89GO:0003725: double-stranded RNA binding9.38E-03
90GO:0004022: alcohol dehydrogenase (NAD) activity9.38E-03
91GO:0003774: motor activity1.02E-02
92GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.02E-02
93GO:0051119: sugar transmembrane transporter activity1.11E-02
94GO:0051536: iron-sulfur cluster binding1.29E-02
95GO:0031418: L-ascorbic acid binding1.29E-02
96GO:0005528: FK506 binding1.29E-02
97GO:0015079: potassium ion transmembrane transporter activity1.38E-02
98GO:0003727: single-stranded RNA binding1.77E-02
99GO:0047134: protein-disulfide reductase activity1.88E-02
100GO:0019843: rRNA binding1.94E-02
101GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.99E-02
102GO:0008536: Ran GTPase binding2.09E-02
103GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.09E-02
104GO:0004791: thioredoxin-disulfide reductase activity2.21E-02
105GO:0015299: solute:proton antiporter activity2.21E-02
106GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.67E-02
107GO:0003743: translation initiation factor activity3.12E-02
108GO:0015250: water channel activity3.16E-02
109GO:0004222: metalloendopeptidase activity4.10E-02
110GO:0003746: translation elongation factor activity4.52E-02
111GO:0050661: NADP binding4.96E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast8.51E-36
2GO:0009534: chloroplast thylakoid1.05E-28
3GO:0009535: chloroplast thylakoid membrane4.86E-25
4GO:0009941: chloroplast envelope2.50E-14
5GO:0009579: thylakoid2.18E-12
6GO:0009570: chloroplast stroma4.87E-11
7GO:0031977: thylakoid lumen3.12E-10
8GO:0009543: chloroplast thylakoid lumen6.96E-10
9GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)9.15E-10
10GO:0010287: plastoglobule5.45E-06
11GO:0031969: chloroplast membrane1.00E-05
12GO:0030076: light-harvesting complex5.11E-05
13GO:0042651: thylakoid membrane8.32E-05
14GO:0009501: amyloplast2.25E-04
15GO:0010007: magnesium chelatase complex8.83E-04
16GO:0009654: photosystem II oxygen evolving complex1.19E-03
17GO:0009517: PSII associated light-harvesting complex II1.68E-03
18GO:0009544: chloroplast ATP synthase complex1.68E-03
19GO:0009522: photosystem I2.27E-03
20GO:0009523: photosystem II2.44E-03
21GO:0019898: extrinsic component of membrane2.44E-03
22GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)2.65E-03
23GO:0031982: vesicle4.35E-03
24GO:0005763: mitochondrial small ribosomal subunit5.65E-03
25GO:0016459: myosin complex7.06E-03
26GO:0032040: small-subunit processome8.58E-03
27GO:0030095: chloroplast photosystem II1.02E-02
28GO:0015935: small ribosomal subunit1.47E-02
29GO:0009706: chloroplast inner membrane1.54E-02
30GO:0005623: cell1.99E-02
31GO:0010319: stromule2.91E-02
32GO:0005840: ribosome3.34E-02
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Gene type



Gene DE type