co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G09870

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
2	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
3	GO:0080127: fruit septum development	0.00E+00
4	GO:0046486: glycerolipid metabolic process	0.00E+00
5	GO:0006907: pinocytosis	0.00E+00
6	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
7	GO:0006863: purine nucleobase transport	1.04E-04
8	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	3.14E-04
9	GO:0043489: RNA stabilization	3.14E-04
10	GO:0043087: regulation of GTPase activity	3.14E-04
11	GO:0051013: microtubule severing	3.14E-04
12	GO:0034757: negative regulation of iron ion transport	3.14E-04
13	GO:0009958: positive gravitropism	3.22E-04
14	GO:0007186: G-protein coupled receptor signaling pathway	3.98E-04
15	GO:0009793: embryo development ending in seed dormancy	5.24E-04
16	GO:0009658: chloroplast organization	6.78E-04
17	GO:0006650: glycerophospholipid metabolic process	6.87E-04
18	GO:0010271: regulation of chlorophyll catabolic process	6.87E-04
19	GO:0001736: establishment of planar polarity	6.87E-04
20	GO:0043039: tRNA aminoacylation	6.87E-04
21	GO:0010582: floral meristem determinacy	8.70E-04
22	GO:0046168: glycerol-3-phosphate catabolic process	1.11E-03
23	GO:0080117: secondary growth	1.11E-03
24	GO:0006518: peptide metabolic process	1.11E-03
25	GO:0042780: tRNA 3'-end processing	1.11E-03
26	GO:0030029: actin filament-based process	1.11E-03
27	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	1.11E-03
28	GO:0045910: negative regulation of DNA recombination	1.11E-03
29	GO:0009825: multidimensional cell growth	1.24E-03
30	GO:0006072: glycerol-3-phosphate metabolic process	1.60E-03
31	GO:0009800: cinnamic acid biosynthetic process	1.60E-03
32	GO:2000904: regulation of starch metabolic process	1.60E-03
33	GO:0045017: glycerolipid biosynthetic process	1.60E-03
34	GO:0009102: biotin biosynthetic process	1.60E-03
35	GO:0051639: actin filament network formation	1.60E-03
36	GO:0010239: chloroplast mRNA processing	1.60E-03
37	GO:0044211: CTP salvage	1.60E-03
38	GO:0009451: RNA modification	1.67E-03
39	GO:0044206: UMP salvage	2.14E-03
40	GO:0006021: inositol biosynthetic process	2.14E-03
41	GO:0009956: radial pattern formation	2.14E-03
42	GO:0051764: actin crosslink formation	2.14E-03
43	GO:0009696: salicylic acid metabolic process	2.74E-03
44	GO:0009107: lipoate biosynthetic process	2.74E-03
45	GO:0010158: abaxial cell fate specification	2.74E-03
46	GO:0016554: cytidine to uridine editing	3.38E-03
47	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	3.38E-03
48	GO:0006559: L-phenylalanine catabolic process	3.38E-03
49	GO:0006206: pyrimidine nucleobase metabolic process	3.38E-03
50	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	3.38E-03
51	GO:0048831: regulation of shoot system development	3.38E-03
52	GO:0003006: developmental process involved in reproduction	3.38E-03
53	GO:0048509: regulation of meristem development	4.06E-03
54	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	4.06E-03
55	GO:0010050: vegetative phase change	4.80E-03
56	GO:0010098: suspensor development	4.80E-03
57	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	4.80E-03
58	GO:0009610: response to symbiotic fungus	4.80E-03
59	GO:0009850: auxin metabolic process	5.57E-03
60	GO:0000105: histidine biosynthetic process	5.57E-03
61	GO:0009627: systemic acquired resistance	6.00E-03
62	GO:0009657: plastid organization	6.39E-03
63	GO:0032544: plastid translation	6.39E-03
64	GO:0071482: cellular response to light stimulus	6.39E-03
65	GO:0048507: meristem development	7.24E-03
66	GO:0046916: cellular transition metal ion homeostasis	7.24E-03
67	GO:0000373: Group II intron splicing	7.24E-03
68	GO:0000160: phosphorelay signal transduction system	7.37E-03
69	GO:1900865: chloroplast RNA modification	8.14E-03
70	GO:0016571: histone methylation	8.14E-03
71	GO:0016573: histone acetylation	8.14E-03
72	GO:0006535: cysteine biosynthetic process from serine	9.07E-03
73	GO:0048829: root cap development	9.07E-03
74	GO:0006298: mismatch repair	9.07E-03
75	GO:0009089: lysine biosynthetic process via diaminopimelate	1.00E-02
76	GO:0016485: protein processing	1.00E-02
77	GO:0048765: root hair cell differentiation	1.00E-02
78	GO:0005983: starch catabolic process	1.11E-02
79	GO:0045037: protein import into chloroplast stroma	1.11E-02
80	GO:0006790: sulfur compound metabolic process	1.11E-02
81	GO:0009926: auxin polar transport	1.15E-02
82	GO:0042546: cell wall biogenesis	1.20E-02
83	GO:0009636: response to toxic substance	1.29E-02
84	GO:0009965: leaf morphogenesis	1.29E-02
85	GO:0010020: chloroplast fission	1.32E-02
86	GO:0009933: meristem structural organization	1.32E-02
87	GO:0010207: photosystem II assembly	1.32E-02
88	GO:0010540: basipetal auxin transport	1.32E-02
89	GO:0009266: response to temperature stimulus	1.32E-02
90	GO:0006302: double-strand break repair	1.32E-02
91	GO:0048467: gynoecium development	1.32E-02
92	GO:0009734: auxin-activated signaling pathway	1.33E-02
93	GO:0005975: carbohydrate metabolic process	1.34E-02
94	GO:0080188: RNA-directed DNA methylation	1.43E-02
95	GO:0046854: phosphatidylinositol phosphorylation	1.43E-02
96	GO:0009736: cytokinin-activated signaling pathway	1.55E-02
97	GO:0006338: chromatin remodeling	1.66E-02
98	GO:0051017: actin filament bundle assembly	1.66E-02
99	GO:0019344: cysteine biosynthetic process	1.66E-02
100	GO:0006418: tRNA aminoacylation for protein translation	1.78E-02
101	GO:0006874: cellular calcium ion homeostasis	1.78E-02
102	GO:0043622: cortical microtubule organization	1.78E-02
103	GO:0009416: response to light stimulus	1.88E-02
104	GO:0006306: DNA methylation	1.91E-02
105	GO:0051321: meiotic cell cycle	1.91E-02
106	GO:0003333: amino acid transmembrane transport	1.91E-02
107	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.93E-02
108	GO:0016226: iron-sulfur cluster assembly	2.03E-02
109	GO:0071215: cellular response to abscisic acid stimulus	2.16E-02
110	GO:0009686: gibberellin biosynthetic process	2.16E-02
111	GO:0010082: regulation of root meristem growth	2.16E-02
112	GO:0009624: response to nematode	2.22E-02
113	GO:0006284: base-excision repair	2.29E-02
114	GO:0010091: trichome branching	2.29E-02
115	GO:0070417: cellular response to cold	2.43E-02
116	GO:0016117: carotenoid biosynthetic process	2.43E-02
117	GO:0000226: microtubule cytoskeleton organization	2.57E-02
118	GO:0000271: polysaccharide biosynthetic process	2.57E-02
119	GO:0010087: phloem or xylem histogenesis	2.57E-02
120	GO:0045489: pectin biosynthetic process	2.71E-02
121	GO:0010305: leaf vascular tissue pattern formation	2.71E-02
122	GO:0010182: sugar mediated signaling pathway	2.71E-02
123	GO:0009058: biosynthetic process	2.93E-02
124	GO:0008654: phospholipid biosynthetic process	3.00E-02
125	GO:0031047: gene silencing by RNA	3.30E-02
126	GO:1901657: glycosyl compound metabolic process	3.45E-02
127	GO:0009639: response to red or far red light	3.61E-02
128	GO:0006464: cellular protein modification process	3.61E-02
129	GO:0040008: regulation of growth	3.66E-02
130	GO:0000910: cytokinesis	3.92E-02
131	GO:0016126: sterol biosynthetic process	4.09E-02
132	GO:0010029: regulation of seed germination	4.25E-02
133	GO:0010411: xyloglucan metabolic process	4.59E-02
134	GO:0009817: defense response to fungus, incompatible interaction	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0004401: histidinol-phosphatase activity	0.00E+00
2	GO:0008710: 8-amino-7-oxononanoate synthase activity	0.00E+00
3	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
4	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
5	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
6	GO:0004519: endonuclease activity	1.15E-04
7	GO:0005345: purine nucleobase transmembrane transporter activity	1.40E-04
8	GO:0004831: tyrosine-tRNA ligase activity	3.14E-04
9	GO:0008568: microtubule-severing ATPase activity	3.14E-04
10	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.14E-04
11	GO:0010347: L-galactose-1-phosphate phosphatase activity	3.14E-04
12	GO:0008836: diaminopimelate decarboxylase activity	3.14E-04
13	GO:0008805: carbon-monoxide oxygenase activity	6.87E-04
14	GO:0008934: inositol monophosphate 1-phosphatase activity	6.87E-04
15	GO:0052833: inositol monophosphate 4-phosphatase activity	6.87E-04
16	GO:0050736: O-malonyltransferase activity	6.87E-04
17	GO:0009884: cytokinin receptor activity	6.87E-04
18	GO:0019156: isoamylase activity	6.87E-04
19	GO:0050017: L-3-cyanoalanine synthase activity	6.87E-04
20	GO:0017118: lipoyltransferase activity	6.87E-04
21	GO:0016415: octanoyltransferase activity	6.87E-04
22	GO:0004047: aminomethyltransferase activity	6.87E-04
23	GO:0052832: inositol monophosphate 3-phosphatase activity	6.87E-04
24	GO:0004222: metalloendopeptidase activity	1.07E-03
25	GO:0045548: phenylalanine ammonia-lyase activity	1.11E-03
26	GO:0042781: 3'-tRNA processing endoribonuclease activity	1.11E-03
27	GO:0005034: osmosensor activity	1.11E-03
28	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	1.11E-03
29	GO:0016707: gibberellin 3-beta-dioxygenase activity	1.11E-03
30	GO:0003723: RNA binding	1.18E-03
31	GO:0080031: methyl salicylate esterase activity	1.60E-03
32	GO:0010328: auxin influx transmembrane transporter activity	2.14E-03
33	GO:0004930: G-protein coupled receptor activity	2.14E-03
34	GO:0004845: uracil phosphoribosyltransferase activity	2.14E-03
35	GO:0010011: auxin binding	2.14E-03
36	GO:0008725: DNA-3-methyladenine glycosylase activity	2.74E-03
37	GO:0004556: alpha-amylase activity	3.38E-03
38	GO:0004462: lactoylglutathione lyase activity	3.38E-03
39	GO:0030983: mismatched DNA binding	3.38E-03
40	GO:0080030: methyl indole-3-acetate esterase activity	3.38E-03
41	GO:0004709: MAP kinase kinase kinase activity	3.38E-03
42	GO:0005525: GTP binding	3.95E-03
43	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.06E-03
44	GO:0004849: uridine kinase activity	4.06E-03
45	GO:0019900: kinase binding	4.06E-03
46	GO:0004124: cysteine synthase activity	4.06E-03
47	GO:0004871: signal transducer activity	6.16E-03
48	GO:0046914: transition metal ion binding	6.39E-03
49	GO:0004673: protein histidine kinase activity	9.07E-03
50	GO:0004712: protein serine/threonine/tyrosine kinase activity	9.73E-03
51	GO:0000155: phosphorelay sensor kinase activity	1.21E-02
52	GO:0043621: protein self-association	1.25E-02
53	GO:0008266: poly(U) RNA binding	1.32E-02
54	GO:0016301: kinase activity	1.35E-02
55	GO:0005217: intracellular ligand-gated ion channel activity	1.43E-02
56	GO:0008061: chitin binding	1.43E-02
57	GO:0004970: ionotropic glutamate receptor activity	1.43E-02
58	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.54E-02
59	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.54E-02
60	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.54E-02
61	GO:0008134: transcription factor binding	1.66E-02
62	GO:0004857: enzyme inhibitor activity	1.66E-02
63	GO:0043424: protein histidine kinase binding	1.78E-02
64	GO:0008408: 3'-5' exonuclease activity	1.91E-02
65	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.03E-02
66	GO:0003779: actin binding	2.15E-02
67	GO:0030570: pectate lyase activity	2.16E-02
68	GO:0004812: aminoacyl-tRNA ligase activity	2.43E-02
69	GO:0010181: FMN binding	2.85E-02
70	GO:0019901: protein kinase binding	3.00E-02
71	GO:0003924: GTPase activity	3.02E-02
72	GO:0030170: pyridoxal phosphate binding	3.08E-02
73	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.15E-02
74	GO:0000156: phosphorelay response regulator activity	3.45E-02
75	GO:0051015: actin filament binding	3.45E-02
76	GO:0003684: damaged DNA binding	3.61E-02
77	GO:0008483: transaminase activity	3.77E-02
78	GO:0008237: metallopeptidase activity	3.77E-02
79	GO:0005200: structural constituent of cytoskeleton	3.77E-02
80	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.59E-02
81	GO:0102483: scopolin beta-glucosidase activity	4.59E-02
82	GO:0042802: identical protein binding	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0000408: EKC/KEOPS complex	0.00E+00
2	GO:0009537: proplastid	0.00E+00
3	GO:0035452: extrinsic component of plastid membrane	0.00E+00
4	GO:0009707: chloroplast outer membrane	1.07E-04
5	GO:0000791: euchromatin	3.14E-04
6	GO:0009507: chloroplast	6.00E-04
7	GO:0009569: chloroplast starch grain	6.87E-04
8	GO:0009513: etioplast	6.87E-04
9	GO:0030870: Mre11 complex	6.87E-04
10	GO:0009509: chromoplast	1.11E-03
11	GO:0032432: actin filament bundle	1.60E-03
12	GO:0009331: glycerol-3-phosphate dehydrogenase complex	1.60E-03
13	GO:0000795: synaptonemal complex	2.74E-03
14	GO:0009986: cell surface	4.80E-03
15	GO:0009501: amyloplast	5.57E-03
16	GO:0005884: actin filament	1.00E-02
17	GO:0016602: CCAAT-binding factor complex	1.21E-02
18	GO:0009574: preprophase band	1.21E-02
19	GO:0000419: DNA-directed RNA polymerase V complex	1.54E-02
20	GO:0005875: microtubule associated complex	1.54E-02
21	GO:0009504: cell plate	3.00E-02
22	GO:0031965: nuclear membrane	3.00E-02
23	GO:0000785: chromatin	3.30E-02
24	GO:0010319: stromule	3.77E-02
25	GO:0030529: intracellular ribonucleoprotein complex	4.09E-02
26	GO:0009570: chloroplast stroma	4.45E-02