co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G09730

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
2	GO:0045184: establishment of protein localization	0.00E+00
3	GO:1903224: regulation of endodermal cell differentiation	0.00E+00
4	GO:0043392: negative regulation of DNA binding	0.00E+00
5	GO:0042659: regulation of cell fate specification	2.70E-04
6	GO:0000025: maltose catabolic process	2.70E-04
7	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	2.70E-04
8	GO:0090558: plant epidermis development	2.70E-04
9	GO:0046520: sphingoid biosynthetic process	2.70E-04
10	GO:0010480: microsporocyte differentiation	2.70E-04
11	GO:0035987: endodermal cell differentiation	2.70E-04
12	GO:0015904: tetracycline transport	2.70E-04
13	GO:0010583: response to cyclopentenone	3.47E-04
14	GO:0009098: leucine biosynthetic process	4.56E-04
15	GO:0018026: peptidyl-lysine monomethylation	5.94E-04
16	GO:0071497: cellular response to freezing	5.94E-04
17	GO:1900033: negative regulation of trichome patterning	5.94E-04
18	GO:0006568: tryptophan metabolic process	5.94E-04
19	GO:2000123: positive regulation of stomatal complex development	5.94E-04
20	GO:0010024: phytochromobilin biosynthetic process	5.94E-04
21	GO:0009773: photosynthetic electron transport in photosystem I	6.14E-04
22	GO:0033591: response to L-ascorbic acid	9.62E-04
23	GO:0090708: specification of plant organ axis polarity	9.62E-04
24	GO:0006788: heme oxidation	9.62E-04
25	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.38E-03
26	GO:1990019: protein storage vacuole organization	1.38E-03
27	GO:0010306: rhamnogalacturonan II biosynthetic process	1.38E-03
28	GO:0010321: regulation of vegetative phase change	1.38E-03
29	GO:0010371: regulation of gibberellin biosynthetic process	1.38E-03
30	GO:0009102: biotin biosynthetic process	1.38E-03
31	GO:0030104: water homeostasis	1.84E-03
32	GO:2000038: regulation of stomatal complex development	1.84E-03
33	GO:0009755: hormone-mediated signaling pathway	1.84E-03
34	GO:1901141: regulation of lignin biosynthetic process	1.84E-03
35	GO:0048629: trichome patterning	1.84E-03
36	GO:0042274: ribosomal small subunit biogenesis	1.84E-03
37	GO:0010375: stomatal complex patterning	2.35E-03
38	GO:0010438: cellular response to sulfur starvation	2.35E-03
39	GO:0010182: sugar mediated signaling pathway	2.42E-03
40	GO:0016554: cytidine to uridine editing	2.90E-03
41	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.90E-03
42	GO:1902456: regulation of stomatal opening	2.90E-03
43	GO:0042793: transcription from plastid promoter	2.90E-03
44	GO:0010405: arabinogalactan protein metabolic process	2.90E-03
45	GO:0032502: developmental process	3.18E-03
46	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.26E-03
47	GO:1901657: glycosyl compound metabolic process	3.39E-03
48	GO:2000033: regulation of seed dormancy process	3.49E-03
49	GO:0031930: mitochondria-nucleus signaling pathway	3.49E-03
50	GO:0009082: branched-chain amino acid biosynthetic process	3.49E-03
51	GO:0048509: regulation of meristem development	3.49E-03
52	GO:0009099: valine biosynthetic process	3.49E-03
53	GO:0030488: tRNA methylation	3.49E-03
54	GO:2000067: regulation of root morphogenesis	3.49E-03
55	GO:0048437: floral organ development	4.12E-03
56	GO:0010027: thylakoid membrane organization	4.30E-03
57	GO:0009819: drought recovery	4.77E-03
58	GO:0046620: regulation of organ growth	4.77E-03
59	GO:0010439: regulation of glucosinolate biosynthetic process	4.77E-03
60	GO:0009690: cytokinin metabolic process	4.77E-03
61	GO:0009704: de-etiolation	4.77E-03
62	GO:2000070: regulation of response to water deprivation	4.77E-03
63	GO:0055075: potassium ion homeostasis	4.77E-03
64	GO:0000105: histidine biosynthetic process	4.77E-03
65	GO:0009097: isoleucine biosynthetic process	5.47E-03
66	GO:0009638: phototropism	6.96E-03
67	GO:1900865: chloroplast RNA modification	6.96E-03
68	GO:0031425: chloroplast RNA processing	6.96E-03
69	GO:2000280: regulation of root development	6.96E-03
70	GO:0010162: seed dormancy process	7.75E-03
71	GO:0009870: defense response signaling pathway, resistance gene-dependent	7.75E-03
72	GO:0009641: shade avoidance	7.75E-03
73	GO:0006631: fatty acid metabolic process	8.46E-03
74	GO:0009682: induced systemic resistance	8.58E-03
75	GO:0009073: aromatic amino acid family biosynthetic process	8.58E-03
76	GO:0048229: gametophyte development	8.58E-03
77	GO:0010015: root morphogenesis	8.58E-03
78	GO:0009640: photomorphogenesis	9.18E-03
79	GO:0005983: starch catabolic process	9.44E-03
80	GO:0010105: negative regulation of ethylene-activated signaling pathway	9.44E-03
81	GO:0010588: cotyledon vascular tissue pattern formation	1.03E-02
82	GO:0010628: positive regulation of gene expression	1.03E-02
83	GO:0006006: glucose metabolic process	1.03E-02
84	GO:0010075: regulation of meristem growth	1.03E-02
85	GO:0009767: photosynthetic electron transport chain	1.03E-02
86	GO:0006855: drug transmembrane transport	1.07E-02
87	GO:0009934: regulation of meristem structural organization	1.12E-02
88	GO:0090351: seedling development	1.22E-02
89	GO:0000162: tryptophan biosynthetic process	1.32E-02
90	GO:0006071: glycerol metabolic process	1.32E-02
91	GO:0006833: water transport	1.32E-02
92	GO:0019762: glucosinolate catabolic process	1.32E-02
93	GO:0009416: response to light stimulus	1.34E-02
94	GO:0009909: regulation of flower development	1.37E-02
95	GO:0080147: root hair cell development	1.42E-02
96	GO:0005992: trehalose biosynthetic process	1.42E-02
97	GO:0030154: cell differentiation	1.44E-02
98	GO:0051302: regulation of cell division	1.52E-02
99	GO:0019953: sexual reproduction	1.52E-02
100	GO:0048278: vesicle docking	1.62E-02
101	GO:0048511: rhythmic process	1.62E-02
102	GO:0010431: seed maturation	1.62E-02
103	GO:0031348: negative regulation of defense response	1.73E-02
104	GO:0009625: response to insect	1.84E-02
105	GO:0080022: primary root development	2.19E-02
106	GO:0010087: phloem or xylem histogenesis	2.19E-02
107	GO:0010118: stomatal movement	2.19E-02
108	GO:0048653: anther development	2.19E-02
109	GO:0009960: endosperm development	2.31E-02
110	GO:0010305: leaf vascular tissue pattern formation	2.31E-02
111	GO:0048868: pollen tube development	2.31E-02
112	GO:0009741: response to brassinosteroid	2.31E-02
113	GO:0009058: biosynthetic process	2.34E-02
114	GO:0061025: membrane fusion	2.43E-02
115	GO:0042752: regulation of circadian rhythm	2.43E-02
116	GO:0006351: transcription, DNA-templated	2.58E-02
117	GO:0009790: embryo development	2.59E-02
118	GO:0071554: cell wall organization or biogenesis	2.68E-02
119	GO:0016032: viral process	2.81E-02
120	GO:0040008: regulation of growth	2.92E-02
121	GO:0010252: auxin homeostasis	3.07E-02
122	GO:0009828: plant-type cell wall loosening	3.07E-02
123	GO:0009451: RNA modification	3.13E-02
124	GO:0007267: cell-cell signaling	3.21E-02
125	GO:0006357: regulation of transcription from RNA polymerase II promoter	3.24E-02
126	GO:0051607: defense response to virus	3.34E-02
127	GO:0009739: response to gibberellin	3.42E-02
128	GO:0007166: cell surface receptor signaling pathway	3.50E-02
129	GO:0006355: regulation of transcription, DNA-templated	3.69E-02
130	GO:0006906: vesicle fusion	3.77E-02
131	GO:0006468: protein phosphorylation	3.90E-02
132	GO:0016311: dephosphorylation	4.06E-02
133	GO:0000160: phosphorelay signal transduction system	4.36E-02
134	GO:0009631: cold acclimation	4.66E-02
135	GO:0009658: chloroplast organization	4.72E-02
136	GO:0006865: amino acid transport	4.82E-02
137	GO:0009867: jasmonic acid mediated signaling pathway	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0071633: dihydroceramidase activity	0.00E+00
2	GO:0047661: amino-acid racemase activity	0.00E+00
3	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
4	GO:0004076: biotin synthase activity	0.00E+00
5	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	2.70E-04
6	GO:0004134: 4-alpha-glucanotransferase activity	2.70E-04
7	GO:0000170: sphingosine hydroxylase activity	2.70E-04
8	GO:0050139: nicotinate-N-glucosyltransferase activity	2.70E-04
9	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.70E-04
10	GO:0042284: sphingolipid delta-4 desaturase activity	5.94E-04
11	GO:0008493: tetracycline transporter activity	5.94E-04
12	GO:0003852: 2-isopropylmalate synthase activity	5.94E-04
13	GO:0070330: aromatase activity	9.62E-04
14	GO:0003913: DNA photolyase activity	9.62E-04
15	GO:0052656: L-isoleucine transaminase activity	1.38E-03
16	GO:0052654: L-leucine transaminase activity	1.38E-03
17	GO:0052655: L-valine transaminase activity	1.38E-03
18	GO:0004084: branched-chain-amino-acid transaminase activity	1.84E-03
19	GO:0004392: heme oxygenase (decyclizing) activity	1.84E-03
20	GO:0016279: protein-lysine N-methyltransferase activity	1.84E-03
21	GO:0018685: alkane 1-monooxygenase activity	2.35E-03
22	GO:0080030: methyl indole-3-acetate esterase activity	2.90E-03
23	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.90E-03
24	GO:0004709: MAP kinase kinase kinase activity	2.90E-03
25	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.49E-03
26	GO:0016832: aldehyde-lyase activity	3.49E-03
27	GO:0102483: scopolin beta-glucosidase activity	5.06E-03
28	GO:0008173: RNA methyltransferase activity	5.47E-03
29	GO:0015238: drug transmembrane transporter activity	5.89E-03
30	GO:0008889: glycerophosphodiester phosphodiesterase activity	6.20E-03
31	GO:0004805: trehalose-phosphatase activity	7.75E-03
32	GO:0030234: enzyme regulator activity	7.75E-03
33	GO:0008422: beta-glucosidase activity	7.77E-03
34	GO:0016788: hydrolase activity, acting on ester bonds	1.09E-02
35	GO:0016298: lipase activity	1.28E-02
36	GO:0005528: FK506 binding	1.42E-02
37	GO:0004176: ATP-dependent peptidase activity	1.62E-02
38	GO:0033612: receptor serine/threonine kinase binding	1.62E-02
39	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	1.75E-02
40	GO:0004871: signal transducer activity	1.86E-02
41	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	2.01E-02
42	GO:0001085: RNA polymerase II transcription factor binding	2.31E-02
43	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	2.53E-02
44	GO:0004519: endonuclease activity	2.54E-02
45	GO:0019901: protein kinase binding	2.55E-02
46	GO:0004518: nuclease activity	2.81E-02
47	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.85E-02
48	GO:0015297: antiporter activity	2.92E-02
49	GO:0000156: phosphorelay response regulator activity	2.94E-02
50	GO:0016759: cellulose synthase activity	3.07E-02
51	GO:0008237: metallopeptidase activity	3.21E-02
52	GO:0005200: structural constituent of cytoskeleton	3.21E-02
53	GO:0016413: O-acetyltransferase activity	3.34E-02
54	GO:0044212: transcription regulatory region DNA binding	3.80E-02
55	GO:0003700: transcription factor activity, sequence-specific DNA binding	4.11E-02
56	GO:0003824: catalytic activity	4.35E-02
57	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.66E-02
58	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	4.66E-02
59	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0000427: plastid-encoded plastid RNA polymerase complex	5.94E-04
2	GO:0009654: photosystem II oxygen evolving complex	1.35E-03
3	GO:0009544: chloroplast ATP synthase complex	1.84E-03
4	GO:0019898: extrinsic component of membrane	2.79E-03
5	GO:0048226: Casparian strip	4.77E-03
6	GO:0009501: amyloplast	4.77E-03
7	GO:0009534: chloroplast thylakoid	5.04E-03
8	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.20E-03
9	GO:0009508: plastid chromosome	1.03E-02
10	GO:0030095: chloroplast photosystem II	1.12E-02
11	GO:0012505: endomembrane system	1.72E-02
12	GO:0015629: actin cytoskeleton	1.84E-02
13	GO:0009543: chloroplast thylakoid lumen	2.22E-02
14	GO:0005770: late endosome	2.31E-02
15	GO:0009295: nucleoid	3.21E-02
16	GO:0005667: transcription factor complex	3.77E-02
17	GO:0009535: chloroplast thylakoid membrane	4.78E-02