co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G08540

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
2	GO:0045014: negative regulation of transcription by glucose	0.00E+00
3	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
4	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.99E-05
5	GO:0032958: inositol phosphate biosynthetic process	1.93E-04
6	GO:0010070: zygote asymmetric cell division	1.93E-04
7	GO:0051013: microtubule severing	1.93E-04
8	GO:0010726: positive regulation of hydrogen peroxide metabolic process	1.93E-04
9	GO:0048829: root cap development	3.32E-04
10	GO:0061062: regulation of nematode larval development	4.33E-04
11	GO:0001736: establishment of planar polarity	4.33E-04
12	GO:0043039: tRNA aminoacylation	4.33E-04
13	GO:0010069: zygote asymmetric cytokinesis in embryo sac	4.33E-04
14	GO:0005983: starch catabolic process	4.41E-04
15	GO:0045037: protein import into chloroplast stroma	4.41E-04
16	GO:0009825: multidimensional cell growth	6.32E-04
17	GO:0010226: response to lithium ion	7.06E-04
18	GO:0009926: auxin polar transport	7.33E-04
19	GO:0003333: amino acid transmembrane transport	9.35E-04
20	GO:0006020: inositol metabolic process	1.01E-03
21	GO:0007276: gamete generation	1.01E-03
22	GO:0009734: auxin-activated signaling pathway	1.03E-03
23	GO:0042127: regulation of cell proliferation	1.20E-03
24	GO:0006284: base-excision repair	1.20E-03
25	GO:0009956: radial pattern formation	1.34E-03
26	GO:0000271: polysaccharide biosynthetic process	1.40E-03
27	GO:0016567: protein ubiquitination	1.47E-03
28	GO:0045489: pectin biosynthetic process	1.51E-03
29	GO:0009624: response to nematode	1.65E-03
30	GO:0009107: lipoate biosynthetic process	1.70E-03
31	GO:0010583: response to cyclopentenone	1.98E-03
32	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.10E-03
33	GO:0010942: positive regulation of cell death	2.10E-03
34	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	2.10E-03
35	GO:0009942: longitudinal axis specification	2.52E-03
36	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	2.52E-03
37	GO:0048444: floral organ morphogenesis	2.52E-03
38	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.52E-03
39	GO:0010444: guard mother cell differentiation	2.96E-03
40	GO:0009610: response to symbiotic fungus	2.96E-03
41	GO:0000082: G1/S transition of mitotic cell cycle	2.96E-03
42	GO:0010492: maintenance of shoot apical meristem identity	3.43E-03
43	GO:0007389: pattern specification process	3.93E-03
44	GO:0007186: G-protein coupled receptor signaling pathway	3.93E-03
45	GO:0009657: plastid organization	3.93E-03
46	GO:0006865: amino acid transport	4.20E-03
47	GO:0016051: carbohydrate biosynthetic process	4.40E-03
48	GO:0048589: developmental growth	4.44E-03
49	GO:0005982: starch metabolic process	4.99E-03
50	GO:0006468: protein phosphorylation	5.24E-03
51	GO:0006782: protoporphyrinogen IX biosynthetic process	5.55E-03
52	GO:0019538: protein metabolic process	5.55E-03
53	GO:0009744: response to sucrose	5.66E-03
54	GO:0009750: response to fructose	6.13E-03
55	GO:0016485: protein processing	6.13E-03
56	GO:0048765: root hair cell differentiation	6.13E-03
57	GO:0008285: negative regulation of cell proliferation	6.13E-03
58	GO:0009733: response to auxin	6.51E-03
59	GO:0010152: pollen maturation	6.73E-03
60	GO:0051301: cell division	7.32E-03
61	GO:0010207: photosystem II assembly	8.01E-03
62	GO:0009887: animal organ morphogenesis	8.01E-03
63	GO:0010540: basipetal auxin transport	8.01E-03
64	GO:0009934: regulation of meristem structural organization	8.01E-03
65	GO:0048768: root hair cell tip growth	8.01E-03
66	GO:0010020: chloroplast fission	8.01E-03
67	GO:0009933: meristem structural organization	8.01E-03
68	GO:0080188: RNA-directed DNA methylation	8.67E-03
69	GO:0006863: purine nucleobase transport	9.35E-03
70	GO:0007010: cytoskeleton organization	1.01E-02
71	GO:0051302: regulation of cell division	1.08E-02
72	GO:0006418: tRNA aminoacylation for protein translation	1.08E-02
73	GO:0043622: cortical microtubule organization	1.08E-02
74	GO:0051726: regulation of cell cycle	1.15E-02
75	GO:0006306: DNA methylation	1.15E-02
76	GO:0010091: trichome branching	1.39E-02
77	GO:0048443: stamen development	1.39E-02
78	GO:0000226: microtubule cytoskeleton organization	1.55E-02
79	GO:0009958: positive gravitropism	1.63E-02
80	GO:0009741: response to brassinosteroid	1.63E-02
81	GO:0010305: leaf vascular tissue pattern formation	1.63E-02
82	GO:0009749: response to glucose	1.81E-02
83	GO:0045490: pectin catabolic process	1.89E-02
84	GO:0002229: defense response to oomycetes	1.90E-02
85	GO:0031047: gene silencing by RNA	1.99E-02
86	GO:0006464: cellular protein modification process	2.18E-02
87	GO:0019760: glucosinolate metabolic process	2.18E-02
88	GO:0010252: auxin homeostasis	2.18E-02
89	GO:0009793: embryo development ending in seed dormancy	2.26E-02
90	GO:0009416: response to light stimulus	2.55E-02
91	GO:0010411: xyloglucan metabolic process	2.77E-02
92	GO:0015995: chlorophyll biosynthetic process	2.77E-02
93	GO:0009817: defense response to fungus, incompatible interaction	2.98E-02
94	GO:0009832: plant-type cell wall biogenesis	3.09E-02
95	GO:0000160: phosphorelay signal transduction system	3.09E-02
96	GO:0010311: lateral root formation	3.09E-02
97	GO:0006811: ion transport	3.20E-02
98	GO:0030001: metal ion transport	3.87E-02
99	GO:0051707: response to other organism	4.23E-02
100	GO:0042546: cell wall biogenesis	4.35E-02
101	GO:0009965: leaf morphogenesis	4.59E-02
102	GO:0009664: plant-type cell wall organization	4.96E-02
103	GO:0042538: hyperosmotic salinity response	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0010011: auxin binding	2.77E-05
2	GO:0010328: auxin influx transmembrane transporter activity	2.77E-05
3	GO:0008725: DNA-3-methyladenine glycosylase activity	4.46E-05
4	GO:0008568: microtubule-severing ATPase activity	1.93E-04
5	GO:0019203: carbohydrate phosphatase activity	1.93E-04
6	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	1.93E-04
7	GO:0000829: inositol heptakisphosphate kinase activity	1.93E-04
8	GO:0000828: inositol hexakisphosphate kinase activity	1.93E-04
9	GO:0004831: tyrosine-tRNA ligase activity	1.93E-04
10	GO:0019156: isoamylase activity	4.33E-04
11	GO:0017118: lipoyltransferase activity	4.33E-04
12	GO:0016415: octanoyltransferase activity	4.33E-04
13	GO:0004109: coproporphyrinogen oxidase activity	4.33E-04
14	GO:0008805: carbon-monoxide oxygenase activity	4.33E-04
15	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.01E-03
16	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.02E-03
17	GO:0030570: pectate lyase activity	1.11E-03
18	GO:0004556: alpha-amylase activity	2.10E-03
19	GO:0004462: lactoylglutathione lyase activity	2.10E-03
20	GO:0004871: signal transducer activity	2.10E-03
21	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	4.44E-03
22	GO:0004674: protein serine/threonine kinase activity	4.60E-03
23	GO:0009672: auxin:proton symporter activity	4.99E-03
24	GO:0015293: symporter activity	6.36E-03
25	GO:0010329: auxin efflux transmembrane transporter activity	7.36E-03
26	GO:0015171: amino acid transmembrane transporter activity	8.45E-03
27	GO:0005515: protein binding	8.89E-03
28	GO:0043424: protein histidine kinase binding	1.08E-02
29	GO:0005345: purine nucleobase transmembrane transporter activity	1.08E-02
30	GO:0016758: transferase activity, transferring hexosyl groups	1.33E-02
31	GO:0004812: aminoacyl-tRNA ligase activity	1.47E-02
32	GO:0016829: lyase activity	1.48E-02
33	GO:0008565: protein transporter activity	1.63E-02
34	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	1.63E-02
35	GO:0016853: isomerase activity	1.72E-02
36	GO:0019901: protein kinase binding	1.81E-02
37	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.90E-02
38	GO:0008017: microtubule binding	1.98E-02
39	GO:0000156: phosphorelay response regulator activity	2.08E-02
40	GO:0008237: metallopeptidase activity	2.27E-02
41	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.77E-02
42	GO:0030247: polysaccharide binding	2.77E-02
43	GO:0005096: GTPase activator activity	3.09E-02
44	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.20E-02
45	GO:0004222: metalloendopeptidase activity	3.20E-02
46	GO:0004672: protein kinase activity	3.29E-02
47	GO:0016301: kinase activity	3.47E-02
48	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.76E-02
49	GO:0043621: protein self-association	4.47E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0035452: extrinsic component of plastid membrane	0.00E+00
3	GO:0009569: chloroplast starch grain	4.33E-04
4	GO:0009570: chloroplast stroma	4.63E-04
5	GO:0009531: secondary cell wall	1.01E-03
6	GO:0009986: cell surface	2.96E-03
7	GO:0009707: chloroplast outer membrane	3.47E-03
8	GO:0005874: microtubule	7.21E-03
9	GO:0005875: microtubule associated complex	9.35E-03
10	GO:0000419: DNA-directed RNA polymerase V complex	9.35E-03
11	GO:0009706: chloroplast inner membrane	1.09E-02
12	GO:0009532: plastid stroma	1.15E-02
13	GO:0005623: cell	1.40E-02
14	GO:0010319: stromule	2.27E-02
15	GO:0031977: thylakoid lumen	3.99E-02
16	GO:0090406: pollen tube	4.23E-02
17	GO:0009507: chloroplast	4.25E-02