co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G08415

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
2	GO:0042821: pyridoxal biosynthetic process	0.00E+00
3	GO:0007638: mechanosensory behavior	0.00E+00
4	GO:0090279: regulation of calcium ion import	0.00E+00
5	GO:0042820: vitamin B6 catabolic process	0.00E+00
6	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
7	GO:1905177: tracheary element differentiation	0.00E+00
8	GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
9	GO:0008298: intracellular mRNA localization	0.00E+00
10	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
11	GO:0071474: cellular hyperosmotic response	0.00E+00
12	GO:0006399: tRNA metabolic process	0.00E+00
13	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
14	GO:0010412: mannan metabolic process	0.00E+00
15	GO:0070979: protein K11-linked ubiquitination	0.00E+00
16	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
17	GO:0043488: regulation of mRNA stability	0.00E+00
18	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
19	GO:0030155: regulation of cell adhesion	0.00E+00
20	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
21	GO:0000455: enzyme-directed rRNA pseudouridine synthesis	0.00E+00
22	GO:0045038: protein import into chloroplast thylakoid membrane	1.18E-06
23	GO:1902326: positive regulation of chlorophyll biosynthetic process	4.77E-06
24	GO:0032544: plastid translation	1.38E-05
25	GO:2001141: regulation of RNA biosynthetic process	3.75E-05
26	GO:0010207: photosystem II assembly	7.88E-05
27	GO:0015995: chlorophyll biosynthetic process	9.69E-05
28	GO:0016123: xanthophyll biosynthetic process	1.05E-04
29	GO:0015979: photosynthesis	3.03E-04
30	GO:0031426: polycistronic mRNA processing	3.24E-04
31	GO:0043266: regulation of potassium ion transport	3.24E-04
32	GO:0051775: response to redox state	3.24E-04
33	GO:0010080: regulation of floral meristem growth	3.24E-04
34	GO:0042371: vitamin K biosynthetic process	3.24E-04
35	GO:2000021: regulation of ion homeostasis	3.24E-04
36	GO:1902458: positive regulation of stomatal opening	3.24E-04
37	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	3.24E-04
38	GO:0009443: pyridoxal 5'-phosphate salvage	3.24E-04
39	GO:0071482: cellular response to light stimulus	4.17E-04
40	GO:0048507: meristem development	5.01E-04
41	GO:1903426: regulation of reactive oxygen species biosynthetic process	7.07E-04
42	GO:0010024: phytochromobilin biosynthetic process	7.07E-04
43	GO:0051262: protein tetramerization	7.07E-04
44	GO:0010275: NAD(P)H dehydrogenase complex assembly	7.07E-04
45	GO:0060359: response to ammonium ion	7.07E-04
46	GO:0010027: thylakoid membrane organization	7.22E-04
47	GO:0043085: positive regulation of catalytic activity	7.96E-04
48	GO:0006415: translational termination	7.96E-04
49	GO:0006352: DNA-templated transcription, initiation	7.96E-04
50	GO:0019684: photosynthesis, light reaction	7.96E-04
51	GO:0009767: photosynthetic electron transport chain	1.03E-03
52	GO:0006954: inflammatory response	1.15E-03
53	GO:0006788: heme oxidation	1.15E-03
54	GO:0010022: meristem determinacy	1.15E-03
55	GO:0031145: anaphase-promoting complex-dependent catabolic process	1.15E-03
56	GO:0010623: programmed cell death involved in cell development	1.15E-03
57	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.15E-03
58	GO:0006696: ergosterol biosynthetic process	1.15E-03
59	GO:0043157: response to cation stress	1.15E-03
60	GO:0005977: glycogen metabolic process	1.15E-03
61	GO:0048281: inflorescence morphogenesis	1.15E-03
62	GO:0051016: barbed-end actin filament capping	1.65E-03
63	GO:0010148: transpiration	1.65E-03
64	GO:0046739: transport of virus in multicellular host	1.65E-03
65	GO:0016556: mRNA modification	1.65E-03
66	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.65E-03
67	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.65E-03
68	GO:0007231: osmosensory signaling pathway	1.65E-03
69	GO:0030071: regulation of mitotic metaphase/anaphase transition	1.65E-03
70	GO:0006107: oxaloacetate metabolic process	1.65E-03
71	GO:0010239: chloroplast mRNA processing	1.65E-03
72	GO:0009226: nucleotide-sugar biosynthetic process	1.65E-03
73	GO:0007017: microtubule-based process	1.76E-03
74	GO:0006546: glycine catabolic process	2.21E-03
75	GO:0010508: positive regulation of autophagy	2.21E-03
76	GO:0006734: NADH metabolic process	2.21E-03
77	GO:0010021: amylopectin biosynthetic process	2.21E-03
78	GO:0006661: phosphatidylinositol biosynthetic process	2.21E-03
79	GO:0009765: photosynthesis, light harvesting	2.21E-03
80	GO:0006109: regulation of carbohydrate metabolic process	2.21E-03
81	GO:0046355: mannan catabolic process	2.21E-03
82	GO:2000122: negative regulation of stomatal complex development	2.21E-03
83	GO:0033500: carbohydrate homeostasis	2.21E-03
84	GO:0031122: cytoplasmic microtubule organization	2.21E-03
85	GO:0016117: carotenoid biosynthetic process	2.71E-03
86	GO:0032876: negative regulation of DNA endoreduplication	2.82E-03
87	GO:0000304: response to singlet oxygen	2.82E-03
88	GO:0080110: sporopollenin biosynthetic process	2.82E-03
89	GO:0010375: stomatal complex patterning	2.82E-03
90	GO:0009658: chloroplast organization	3.38E-03
91	GO:0032973: amino acid export	3.49E-03
92	GO:0000741: karyogamy	3.49E-03
93	GO:0050665: hydrogen peroxide biosynthetic process	3.49E-03
94	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.49E-03
95	GO:0009959: negative gravitropism	3.49E-03
96	GO:0006655: phosphatidylglycerol biosynthetic process	3.49E-03
97	GO:0016554: cytidine to uridine editing	3.49E-03
98	GO:0032502: developmental process	4.16E-03
99	GO:0017148: negative regulation of translation	4.20E-03
100	GO:0009854: oxidative photosynthetic carbon pathway	4.20E-03
101	GO:0010019: chloroplast-nucleus signaling pathway	4.20E-03
102	GO:0042372: phylloquinone biosynthetic process	4.20E-03
103	GO:0006400: tRNA modification	4.95E-03
104	GO:0010103: stomatal complex morphogenesis	4.95E-03
105	GO:0010374: stomatal complex development	4.95E-03
106	GO:0009395: phospholipid catabolic process	4.95E-03
107	GO:0043090: amino acid import	4.95E-03
108	GO:0051693: actin filament capping	4.95E-03
109	GO:0070370: cellular heat acclimation	4.95E-03
110	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	4.95E-03
111	GO:0042255: ribosome assembly	5.76E-03
112	GO:0009690: cytokinin metabolic process	5.76E-03
113	GO:0006353: DNA-templated transcription, termination	5.76E-03
114	GO:0006605: protein targeting	5.76E-03
115	GO:0032875: regulation of DNA endoreduplication	5.76E-03
116	GO:2000070: regulation of response to water deprivation	5.76E-03
117	GO:0010492: maintenance of shoot apical meristem identity	5.76E-03
118	GO:0007155: cell adhesion	5.76E-03
119	GO:0048564: photosystem I assembly	5.76E-03
120	GO:0007186: G-protein coupled receptor signaling pathway	6.60E-03
121	GO:0010052: guard cell differentiation	6.60E-03
122	GO:0010497: plasmodesmata-mediated intercellular transport	6.60E-03
123	GO:0009657: plastid organization	6.60E-03
124	GO:0010204: defense response signaling pathway, resistance gene-independent	6.60E-03
125	GO:0017004: cytochrome complex assembly	6.60E-03
126	GO:0015996: chlorophyll catabolic process	6.60E-03
127	GO:0001558: regulation of cell growth	6.60E-03
128	GO:0018298: protein-chromophore linkage	7.35E-03
129	GO:0080144: amino acid homeostasis	7.48E-03
130	GO:0046916: cellular transition metal ion homeostasis	7.48E-03
131	GO:0009051: pentose-phosphate shunt, oxidative branch	7.48E-03
132	GO:0010206: photosystem II repair	7.48E-03
133	GO:1900865: chloroplast RNA modification	8.41E-03
134	GO:0019538: protein metabolic process	9.37E-03
135	GO:1903507: negative regulation of nucleic acid-templated transcription	1.04E-02
136	GO:0006816: calcium ion transport	1.04E-02
137	GO:0009089: lysine biosynthetic process via diaminopimelate	1.04E-02
138	GO:0016024: CDP-diacylglycerol biosynthetic process	1.14E-02
139	GO:0045037: protein import into chloroplast stroma	1.14E-02
140	GO:0010582: floral meristem determinacy	1.14E-02
141	GO:0006108: malate metabolic process	1.25E-02
142	GO:0030036: actin cytoskeleton organization	1.25E-02
143	GO:0009718: anthocyanin-containing compound biosynthetic process	1.25E-02
144	GO:0007015: actin filament organization	1.36E-02
145	GO:0019853: L-ascorbic acid biosynthetic process	1.48E-02
146	GO:0010030: positive regulation of seed germination	1.48E-02
147	GO:0070588: calcium ion transmembrane transport	1.48E-02
148	GO:0009944: polarity specification of adaxial/abaxial axis	1.72E-02
149	GO:0051302: regulation of cell division	1.84E-02
150	GO:0008299: isoprenoid biosynthetic process	1.84E-02
151	GO:0043086: negative regulation of catalytic activity	1.93E-02
152	GO:0010431: seed maturation	1.97E-02
153	GO:0031408: oxylipin biosynthetic process	1.97E-02
154	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.10E-02
155	GO:0006730: one-carbon metabolic process	2.10E-02
156	GO:0009686: gibberellin biosynthetic process	2.23E-02
157	GO:0001944: vasculature development	2.23E-02
158	GO:0006012: galactose metabolic process	2.23E-02
159	GO:0019722: calcium-mediated signaling	2.37E-02
160	GO:0009306: protein secretion	2.37E-02
161	GO:0010089: xylem development	2.37E-02
162	GO:0010584: pollen exine formation	2.37E-02
163	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.51E-02
164	GO:0008033: tRNA processing	2.65E-02
165	GO:0010087: phloem or xylem histogenesis	2.65E-02
166	GO:0042631: cellular response to water deprivation	2.65E-02
167	GO:0006662: glycerol ether metabolic process	2.80E-02
168	GO:0010197: polar nucleus fusion	2.80E-02
169	GO:0010182: sugar mediated signaling pathway	2.80E-02
170	GO:0010268: brassinosteroid homeostasis	2.80E-02
171	GO:0045489: pectin biosynthetic process	2.80E-02
172	GO:0055114: oxidation-reduction process	2.82E-02
173	GO:0019252: starch biosynthetic process	3.10E-02
174	GO:0008654: phospholipid biosynthetic process	3.10E-02
175	GO:0009791: post-embryonic development	3.10E-02
176	GO:0006629: lipid metabolic process	3.20E-02
177	GO:0016132: brassinosteroid biosynthetic process	3.25E-02
178	GO:0016032: viral process	3.41E-02
179	GO:0009630: gravitropism	3.41E-02
180	GO:0010583: response to cyclopentenone	3.41E-02
181	GO:0016125: sterol metabolic process	3.73E-02
182	GO:0007267: cell-cell signaling	3.89E-02
183	GO:0005975: carbohydrate metabolic process	3.96E-02
184	GO:0016126: sterol biosynthetic process	4.23E-02
185	GO:0009627: systemic acquired resistance	4.57E-02
186	GO:0008380: RNA splicing	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0050613: delta14-sterol reductase activity	0.00E+00
2	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
3	GO:0046905: phytoene synthase activity	0.00E+00
4	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
5	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
6	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
7	GO:0005048: signal sequence binding	0.00E+00
8	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
9	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
10	GO:0019144: ADP-sugar diphosphatase activity	0.00E+00
11	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
12	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
13	GO:0019899: enzyme binding	6.35E-06
14	GO:0070402: NADPH binding	1.69E-05
15	GO:0043495: protein anchor	6.70E-05
16	GO:0001053: plastid sigma factor activity	6.70E-05
17	GO:0016987: sigma factor activity	6.70E-05
18	GO:0051996: squalene synthase activity	3.24E-04
19	GO:0008746: NAD(P)+ transhydrogenase activity	3.24E-04
20	GO:0046906: tetrapyrrole binding	3.24E-04
21	GO:0005227: calcium activated cation channel activity	3.24E-04
22	GO:0051777: ent-kaurenoate oxidase activity	3.24E-04
23	GO:0080042: ADP-glucose pyrophosphohydrolase activity	3.24E-04
24	GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity	3.24E-04
25	GO:0008568: microtubule-severing ATPase activity	3.24E-04
26	GO:0004033: aldo-keto reductase (NADP) activity	3.40E-04
27	GO:0003747: translation release factor activity	5.01E-04
28	GO:0019156: isoamylase activity	7.07E-04
29	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	7.07E-04
30	GO:0048531: beta-1,3-galactosyltransferase activity	7.07E-04
31	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	7.07E-04
32	GO:0010291: carotene beta-ring hydroxylase activity	7.07E-04
33	GO:0080041: ADP-ribose pyrophosphohydrolase activity	7.07E-04
34	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	7.07E-04
35	GO:0004047: aminomethyltransferase activity	7.07E-04
36	GO:0005528: FK506 binding	1.59E-03
37	GO:0016149: translation release factor activity, codon specific	1.65E-03
38	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.65E-03
39	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	1.65E-03
40	GO:0043023: ribosomal large subunit binding	1.65E-03
41	GO:0004300: enoyl-CoA hydratase activity	1.65E-03
42	GO:0017057: 6-phosphogluconolactonase activity	1.65E-03
43	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	1.65E-03
44	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	1.65E-03
45	GO:0048027: mRNA 5'-UTR binding	1.65E-03
46	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	2.21E-03
47	GO:0019199: transmembrane receptor protein kinase activity	2.21E-03
48	GO:0042277: peptide binding	2.21E-03
49	GO:0004392: heme oxygenase (decyclizing) activity	2.21E-03
50	GO:0008891: glycolate oxidase activity	2.21E-03
51	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	2.21E-03
52	GO:0016985: mannan endo-1,4-beta-mannosidase activity	2.21E-03
53	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.21E-03
54	GO:0004045: aminoacyl-tRNA hydrolase activity	2.21E-03
55	GO:0080032: methyl jasmonate esterase activity	2.21E-03
56	GO:0022891: substrate-specific transmembrane transporter activity	2.30E-03
57	GO:0008374: O-acyltransferase activity	2.82E-03
58	GO:0003690: double-stranded DNA binding	2.85E-03
59	GO:0004556: alpha-amylase activity	3.49E-03
60	GO:0016208: AMP binding	3.49E-03
61	GO:0004462: lactoylglutathione lyase activity	3.49E-03
62	GO:0016615: malate dehydrogenase activity	3.49E-03
63	GO:0008200: ion channel inhibitor activity	3.49E-03
64	GO:0080030: methyl indole-3-acetate esterase activity	3.49E-03
65	GO:0048038: quinone binding	3.89E-03
66	GO:0030060: L-malate dehydrogenase activity	4.20E-03
67	GO:0005261: cation channel activity	4.20E-03
68	GO:0003730: mRNA 3'-UTR binding	4.20E-03
69	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	4.20E-03
70	GO:0005200: structural constituent of cytoskeleton	5.01E-03
71	GO:0008312: 7S RNA binding	5.76E-03
72	GO:0016168: chlorophyll binding	5.96E-03
73	GO:0046914: transition metal ion binding	6.60E-03
74	GO:0003824: catalytic activity	7.81E-03
75	GO:0030955: potassium ion binding	8.41E-03
76	GO:0004743: pyruvate kinase activity	8.41E-03
77	GO:0003924: GTPase activity	8.48E-03
78	GO:0008047: enzyme activator activity	9.37E-03
79	GO:0015020: glucuronosyltransferase activity	9.37E-03
80	GO:0003993: acid phosphatase activity	9.76E-03
81	GO:0016491: oxidoreductase activity	1.11E-02
82	GO:0008378: galactosyltransferase activity	1.14E-02
83	GO:0042802: identical protein binding	1.17E-02
84	GO:0008081: phosphoric diester hydrolase activity	1.25E-02
85	GO:0031072: heat shock protein binding	1.25E-02
86	GO:0005262: calcium channel activity	1.25E-02
87	GO:0009982: pseudouridine synthase activity	1.25E-02
88	GO:0035091: phosphatidylinositol binding	1.31E-02
89	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.36E-02
90	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.41E-02
91	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.63E-02
92	GO:0003723: RNA binding	1.63E-02
93	GO:0003714: transcription corepressor activity	1.72E-02
94	GO:0004857: enzyme inhibitor activity	1.72E-02
95	GO:0030570: pectate lyase activity	2.23E-02
96	GO:0003727: single-stranded RNA binding	2.37E-02
97	GO:0047134: protein-disulfide reductase activity	2.51E-02
98	GO:0008080: N-acetyltransferase activity	2.80E-02
99	GO:0050662: coenzyme binding	2.95E-02
100	GO:0010181: FMN binding	2.95E-02
101	GO:0004791: thioredoxin-disulfide reductase activity	2.95E-02
102	GO:0016853: isomerase activity	2.95E-02
103	GO:0016829: lyase activity	3.15E-02
104	GO:0004519: endonuclease activity	3.55E-02
105	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.57E-02
106	GO:0008483: transaminase activity	3.89E-02
107	GO:0005525: GTP binding	4.17E-02
108	GO:0008375: acetylglucosaminyltransferase activity	4.57E-02
109	GO:0008236: serine-type peptidase activity	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009507: chloroplast	1.63E-27
3	GO:0009535: chloroplast thylakoid membrane	1.01E-13
4	GO:0009570: chloroplast stroma	5.77E-11
5	GO:0031969: chloroplast membrane	3.81E-06
6	GO:0080085: signal recognition particle, chloroplast targeting	4.77E-06
7	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.91E-05
8	GO:0009543: chloroplast thylakoid lumen	2.00E-05
9	GO:0009941: chloroplast envelope	2.07E-05
10	GO:0009579: thylakoid	3.09E-05
11	GO:0042651: thylakoid membrane	1.50E-04
12	GO:0009654: photosystem II oxygen evolving complex	1.50E-04
13	GO:0009344: nitrite reductase complex [NAD(P)H]	3.24E-04
14	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	4.17E-04
15	GO:0009534: chloroplast thylakoid	6.66E-04
16	GO:0008290: F-actin capping protein complex	7.07E-04
17	GO:0009528: plastid inner membrane	1.15E-03
18	GO:0015630: microtubule cytoskeleton	1.65E-03
19	GO:0031977: thylakoid lumen	1.68E-03
20	GO:0009527: plastid outer membrane	2.21E-03
21	GO:0009523: photosystem II	3.64E-03
22	GO:0019898: extrinsic component of membrane	3.64E-03
23	GO:0010319: stromule	5.01E-03
24	GO:0009501: amyloplast	5.76E-03
25	GO:0009539: photosystem II reaction center	6.60E-03
26	GO:0042644: chloroplast nucleoid	7.48E-03
27	GO:0045298: tubulin complex	7.48E-03
28	GO:0005680: anaphase-promoting complex	7.48E-03
29	GO:0016604: nuclear body	8.41E-03
30	GO:0000311: plastid large ribosomal subunit	1.14E-02
31	GO:0046658: anchored component of plasma membrane	1.23E-02
32	GO:0009508: plastid chromosome	1.25E-02
33	GO:0030095: chloroplast photosystem II	1.36E-02
34	GO:0030176: integral component of endoplasmic reticulum membrane	1.48E-02
35	GO:0043234: protein complex	1.60E-02
36	GO:0009532: plastid stroma	1.97E-02
37	GO:0009522: photosystem I	2.95E-02
38	GO:0031225: anchored component of membrane	3.86E-02
39	GO:0009295: nucleoid	3.89E-02
40	GO:0005778: peroxisomal membrane	3.89E-02
41	GO:0030529: intracellular ribonucleoprotein complex	4.23E-02