Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G07690

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0001778: plasma membrane repair0.00E+00
2GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
3GO:1903224: regulation of endodermal cell differentiation0.00E+00
4GO:0080127: fruit septum development0.00E+00
5GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
6GO:1900037: regulation of cellular response to hypoxia0.00E+00
7GO:0045184: establishment of protein localization0.00E+00
8GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
9GO:0006907: pinocytosis0.00E+00
10GO:0070125: mitochondrial translational elongation0.00E+00
11GO:0031222: arabinan catabolic process0.00E+00
12GO:0061157: mRNA destabilization0.00E+00
13GO:0010422: regulation of brassinosteroid biosynthetic process0.00E+00
14GO:0000455: enzyme-directed rRNA pseudouridine synthesis0.00E+00
15GO:0046620: regulation of organ growth9.20E-05
16GO:1900865: chloroplast RNA modification2.14E-04
17GO:0040008: regulation of growth2.45E-04
18GO:0009733: response to auxin2.56E-04
19GO:0016131: brassinosteroid metabolic process4.64E-04
20GO:0016554: cytidine to uridine editing6.43E-04
21GO:0009734: auxin-activated signaling pathway7.03E-04
22GO:0090558: plant epidermis development8.29E-04
23GO:0051382: kinetochore assembly8.29E-04
24GO:0043266: regulation of potassium ion transport8.29E-04
25GO:0046520: sphingoid biosynthetic process8.29E-04
26GO:0010480: microsporocyte differentiation8.29E-04
27GO:2000021: regulation of ion homeostasis8.29E-04
28GO:0035987: endodermal cell differentiation8.29E-04
29GO:0051247: positive regulation of protein metabolic process8.29E-04
30GO:1902458: positive regulation of stomatal opening8.29E-04
31GO:0015904: tetracycline transport8.29E-04
32GO:2000905: negative regulation of starch metabolic process8.29E-04
33GO:0034757: negative regulation of iron ion transport8.29E-04
34GO:0042659: regulation of cell fate specification8.29E-04
35GO:0006285: base-excision repair, AP site formation8.29E-04
36GO:0000025: maltose catabolic process8.29E-04
37GO:0009090: homoserine biosynthetic process8.29E-04
38GO:0030488: tRNA methylation8.48E-04
39GO:0009416: response to light stimulus1.28E-03
40GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.31E-03
41GO:0000105: histidine biosynthetic process1.34E-03
42GO:0032544: plastid translation1.64E-03
43GO:1900871: chloroplast mRNA modification1.80E-03
44GO:0010271: regulation of chlorophyll catabolic process1.80E-03
45GO:0006432: phenylalanyl-tRNA aminoacylation1.80E-03
46GO:1900033: negative regulation of trichome patterning1.80E-03
47GO:0080009: mRNA methylation1.80E-03
48GO:0009786: regulation of asymmetric cell division1.80E-03
49GO:0046740: transport of virus in host, cell to cell1.80E-03
50GO:0031648: protein destabilization1.80E-03
51GO:1903426: regulation of reactive oxygen species biosynthetic process1.80E-03
52GO:0006568: tryptophan metabolic process1.80E-03
53GO:0031297: replication fork processing1.80E-03
54GO:2000123: positive regulation of stomatal complex development1.80E-03
55GO:0048507: meristem development1.98E-03
56GO:0000373: Group II intron splicing1.98E-03
57GO:0009098: leucine biosynthetic process2.34E-03
58GO:0006296: nucleotide-excision repair, DNA incision, 5'-to lesion2.98E-03
59GO:0071398: cellular response to fatty acid2.98E-03
60GO:0030029: actin filament-based process2.98E-03
61GO:0045910: negative regulation of DNA recombination2.98E-03
62GO:0033591: response to L-ascorbic acid2.98E-03
63GO:0090708: specification of plant organ axis polarity2.98E-03
64GO:0080117: secondary growth2.98E-03
65GO:0048586: regulation of long-day photoperiodism, flowering2.98E-03
66GO:0010582: floral meristem determinacy3.65E-03
67GO:0006006: glucose metabolic process4.15E-03
68GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity4.34E-03
69GO:1990019: protein storage vacuole organization4.34E-03
70GO:0009067: aspartate family amino acid biosynthetic process4.34E-03
71GO:0010371: regulation of gibberellin biosynthetic process4.34E-03
72GO:0051513: regulation of monopolar cell growth4.34E-03
73GO:0051639: actin filament network formation4.34E-03
74GO:0032456: endocytic recycling4.34E-03
75GO:0034059: response to anoxia4.34E-03
76GO:0010239: chloroplast mRNA processing4.34E-03
77GO:0006612: protein targeting to membrane4.34E-03
78GO:0006021: inositol biosynthetic process5.87E-03
79GO:0008295: spermidine biosynthetic process5.87E-03
80GO:0048629: trichome patterning5.87E-03
81GO:0051764: actin crosslink formation5.87E-03
82GO:0042274: ribosomal small subunit biogenesis5.87E-03
83GO:2000306: positive regulation of photomorphogenesis5.87E-03
84GO:0030104: water homeostasis5.87E-03
85GO:2000038: regulation of stomatal complex development5.87E-03
86GO:0000160: phosphorelay signal transduction system6.50E-03
87GO:0051017: actin filament bundle assembly6.55E-03
88GO:0005992: trehalose biosynthetic process6.55E-03
89GO:0009696: salicylic acid metabolic process7.55E-03
90GO:0045038: protein import into chloroplast thylakoid membrane7.55E-03
91GO:0045487: gibberellin catabolic process7.55E-03
92GO:0048497: maintenance of floral organ identity7.55E-03
93GO:0016123: xanthophyll biosynthetic process7.55E-03
94GO:0010158: abaxial cell fate specification7.55E-03
95GO:0080110: sporopollenin biosynthetic process7.55E-03
96GO:0010375: stomatal complex patterning7.55E-03
97GO:0010431: seed maturation7.97E-03
98GO:0003006: developmental process involved in reproduction9.39E-03
99GO:0018258: protein O-linked glycosylation via hydroxyproline9.39E-03
100GO:0010405: arabinogalactan protein metabolic process9.39E-03
101GO:0009913: epidermal cell differentiation9.39E-03
102GO:0010358: leaf shaping9.39E-03
103GO:1902456: regulation of stomatal opening9.39E-03
104GO:0048831: regulation of shoot system development9.39E-03
105GO:0071215: cellular response to abscisic acid stimulus9.55E-03
106GO:0006284: base-excision repair1.04E-02
107GO:0009612: response to mechanical stimulus1.14E-02
108GO:0009082: branched-chain amino acid biosynthetic process1.14E-02
109GO:0048509: regulation of meristem development1.14E-02
110GO:0009099: valine biosynthetic process1.14E-02
111GO:0009088: threonine biosynthetic process1.14E-02
112GO:2000067: regulation of root morphogenesis1.14E-02
113GO:0009926: auxin polar transport1.15E-02
114GO:0010087: phloem or xylem histogenesis1.22E-02
115GO:0010305: leaf vascular tissue pattern formation1.32E-02
116GO:0010182: sugar mediated signaling pathway1.32E-02
117GO:0009741: response to brassinosteroid1.32E-02
118GO:0010268: brassinosteroid homeostasis1.32E-02
119GO:0015693: magnesium ion transport1.35E-02
120GO:0000712: resolution of meiotic recombination intermediates1.35E-02
121GO:0030497: fatty acid elongation1.35E-02
122GO:0010098: suspensor development1.35E-02
123GO:0010050: vegetative phase change1.35E-02
124GO:0048437: floral organ development1.35E-02
125GO:0009793: embryo development ending in seed dormancy1.40E-02
126GO:0009850: auxin metabolic process1.58E-02
127GO:0009690: cytokinin metabolic process1.58E-02
128GO:0009704: de-etiolation1.58E-02
129GO:0070413: trehalose metabolism in response to stress1.58E-02
130GO:2000070: regulation of response to water deprivation1.58E-02
131GO:0055075: potassium ion homeostasis1.58E-02
132GO:0009451: RNA modification1.58E-02
133GO:0006402: mRNA catabolic process1.58E-02
134GO:0016132: brassinosteroid biosynthetic process1.63E-02
135GO:0009736: cytokinin-activated signaling pathway1.68E-02
136GO:0016032: viral process1.75E-02
137GO:0032502: developmental process1.75E-02
138GO:0010583: response to cyclopentenone1.75E-02
139GO:0007186: G-protein coupled receptor signaling pathway1.81E-02
140GO:0009097: isoleucine biosynthetic process1.81E-02
141GO:0009657: plastid organization1.81E-02
142GO:0007129: synapsis1.81E-02
143GO:0071482: cellular response to light stimulus1.81E-02
144GO:0015996: chlorophyll catabolic process1.81E-02
145GO:0007166: cell surface receptor signaling pathway1.87E-02
146GO:1901657: glycosyl compound metabolic process1.87E-02
147GO:0009056: catabolic process2.06E-02
148GO:0009051: pentose-phosphate shunt, oxidative branch2.06E-02
149GO:0051865: protein autoubiquitination2.06E-02
150GO:0016571: histone methylation2.32E-02
151GO:0031425: chloroplast RNA processing2.32E-02
152GO:0016573: histone acetylation2.32E-02
153GO:0009638: phototropism2.32E-02
154GO:2000280: regulation of root development2.32E-02
155GO:0010018: far-red light signaling pathway2.32E-02
156GO:0009086: methionine biosynthetic process2.32E-02
157GO:0010027: thylakoid membrane organization2.37E-02
158GO:0010029: regulation of seed germination2.51E-02
159GO:0009870: defense response signaling pathway, resistance gene-dependent2.60E-02
160GO:0048829: root cap development2.60E-02
161GO:0009641: shade avoidance2.60E-02
162GO:0006298: mismatch repair2.60E-02
163GO:0016441: posttranscriptional gene silencing2.60E-02
164GO:0010629: negative regulation of gene expression2.60E-02
165GO:0009299: mRNA transcription2.60E-02
166GO:0048573: photoperiodism, flowering2.80E-02
167GO:0009742: brassinosteroid mediated signaling pathway2.83E-02
168GO:0009773: photosynthetic electron transport in photosystem I2.88E-02
169GO:0009073: aromatic amino acid family biosynthetic process2.88E-02
170GO:0043085: positive regulation of catalytic activity2.88E-02
171GO:0006415: translational termination2.88E-02
172GO:0048229: gametophyte development2.88E-02
173GO:0009089: lysine biosynthetic process via diaminopimelate2.88E-02
174GO:0009658: chloroplast organization2.93E-02
175GO:0005983: starch catabolic process3.17E-02
176GO:0045037: protein import into chloroplast stroma3.17E-02
177GO:0006790: sulfur compound metabolic process3.17E-02
178GO:0010628: positive regulation of gene expression3.48E-02
179GO:0010102: lateral root morphogenesis3.48E-02
180GO:0009785: blue light signaling pathway3.48E-02
181GO:0009691: cytokinin biosynthetic process3.48E-02
182GO:2000028: regulation of photoperiodism, flowering3.48E-02
183GO:0010075: regulation of meristem growth3.48E-02
184GO:0009725: response to hormone3.48E-02
185GO:0009767: photosynthetic electron transport chain3.48E-02
186GO:0010588: cotyledon vascular tissue pattern formation3.48E-02
187GO:0009910: negative regulation of flower development3.59E-02
188GO:0009266: response to temperature stimulus3.79E-02
189GO:0009934: regulation of meristem structural organization3.79E-02
190GO:0048467: gynoecium development3.79E-02
191GO:0010207: photosystem II assembly3.79E-02
192GO:0009845: seed germination3.84E-02
193GO:0034599: cellular response to oxidative stress4.11E-02
194GO:0090351: seedling development4.11E-02
195GO:0046854: phosphatidylinositol phosphorylation4.11E-02
196GO:0009790: embryo development4.21E-02
197GO:0042753: positive regulation of circadian rhythm4.44E-02
198GO:0006833: water transport4.44E-02
199GO:0019762: glucosinolate catabolic process4.44E-02
200GO:0000162: tryptophan biosynthetic process4.44E-02
201GO:0006839: mitochondrial transport4.47E-02
202GO:0006631: fatty acid metabolic process4.66E-02
203GO:0080147: root hair cell development4.78E-02
204GO:0006338: chromatin remodeling4.78E-02
RankGO TermAdjusted P value
1GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
2GO:0004401: histidinol-phosphatase activity0.00E+00
3GO:0047793: cycloeucalenol cycloisomerase activity0.00E+00
4GO:0015267: channel activity0.00E+00
5GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
6GO:0008922: long-chain fatty acid [acyl-carrier-protein] ligase activity0.00E+00
7GO:0052834: inositol monophosphate phosphatase activity0.00E+00
8GO:0071633: dihydroceramidase activity0.00E+00
9GO:0001872: (1->3)-beta-D-glucan binding1.87E-04
10GO:0080030: methyl indole-3-acetate esterase activity6.43E-04
11GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity8.29E-04
12GO:0008395: steroid hydroxylase activity8.29E-04
13GO:0000703: oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity8.29E-04
14GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity8.29E-04
15GO:0052381: tRNA dimethylallyltransferase activity8.29E-04
16GO:0010347: L-galactose-1-phosphate phosphatase activity8.29E-04
17GO:0010012: steroid 22-alpha hydroxylase activity8.29E-04
18GO:0000170: sphingosine hydroxylase activity8.29E-04
19GO:0050139: nicotinate-N-glucosyltransferase activity8.29E-04
20GO:0047259: glucomannan 4-beta-mannosyltransferase activity8.29E-04
21GO:0005227: calcium activated cation channel activity8.29E-04
22GO:0004425: indole-3-glycerol-phosphate synthase activity8.29E-04
23GO:0004134: 4-alpha-glucanotransferase activity8.29E-04
24GO:0003723: RNA binding1.68E-03
25GO:0008805: carbon-monoxide oxygenase activity1.80E-03
26GO:0042284: sphingolipid delta-4 desaturase activity1.80E-03
27GO:0008934: inositol monophosphate 1-phosphatase activity1.80E-03
28GO:0008493: tetracycline transporter activity1.80E-03
29GO:0052833: inositol monophosphate 4-phosphatase activity1.80E-03
30GO:0004826: phenylalanine-tRNA ligase activity1.80E-03
31GO:0004412: homoserine dehydrogenase activity1.80E-03
32GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.80E-03
33GO:0050736: O-malonyltransferase activity1.80E-03
34GO:1901981: phosphatidylinositol phosphate binding1.80E-03
35GO:0009884: cytokinin receptor activity1.80E-03
36GO:0017118: lipoyltransferase activity1.80E-03
37GO:0003852: 2-isopropylmalate synthase activity1.80E-03
38GO:0045543: gibberellin 2-beta-dioxygenase activity1.80E-03
39GO:0043425: bHLH transcription factor binding1.80E-03
40GO:0010296: prenylcysteine methylesterase activity1.80E-03
41GO:0004766: spermidine synthase activity1.80E-03
42GO:0052832: inositol monophosphate 3-phosphatase activity1.80E-03
43GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.80E-03
44GO:0004805: trehalose-phosphatase activity2.74E-03
45GO:0003913: DNA photolyase activity2.98E-03
46GO:0003906: DNA-(apurinic or apyrimidinic site) lyase activity2.98E-03
47GO:0004148: dihydrolipoyl dehydrogenase activity2.98E-03
48GO:0016805: dipeptidase activity2.98E-03
49GO:0005034: osmosensor activity2.98E-03
50GO:0004180: carboxypeptidase activity2.98E-03
51GO:0004519: endonuclease activity3.47E-03
52GO:0009982: pseudouridine synthase activity4.15E-03
53GO:0016149: translation release factor activity, codon specific4.34E-03
54GO:0052656: L-isoleucine transaminase activity4.34E-03
55GO:0052654: L-leucine transaminase activity4.34E-03
56GO:0080031: methyl salicylate esterase activity4.34E-03
57GO:0052655: L-valine transaminase activity4.34E-03
58GO:0004072: aspartate kinase activity4.34E-03
59GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity4.34E-03
60GO:0004084: branched-chain-amino-acid transaminase activity5.87E-03
61GO:0019199: transmembrane receptor protein kinase activity5.87E-03
62GO:0046556: alpha-L-arabinofuranosidase activity5.87E-03
63GO:0004345: glucose-6-phosphate dehydrogenase activity5.87E-03
64GO:0019104: DNA N-glycosylase activity5.87E-03
65GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed5.87E-03
66GO:0070696: transmembrane receptor protein serine/threonine kinase binding7.55E-03
67GO:0008725: DNA-3-methyladenine glycosylase activity7.55E-03
68GO:0004523: RNA-DNA hybrid ribonuclease activity7.55E-03
69GO:0016788: hydrolase activity, acting on ester bonds9.34E-03
70GO:0004130: cytochrome-c peroxidase activity9.39E-03
71GO:0016688: L-ascorbate peroxidase activity9.39E-03
72GO:0003968: RNA-directed 5'-3' RNA polymerase activity9.39E-03
73GO:0030983: mismatched DNA binding9.39E-03
74GO:1990714: hydroxyproline O-galactosyltransferase activity9.39E-03
75GO:0004709: MAP kinase kinase kinase activity9.39E-03
76GO:0016832: aldehyde-lyase activity1.14E-02
77GO:0019900: kinase binding1.14E-02
78GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.14E-02
79GO:0051753: mannan synthase activity1.14E-02
80GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity1.14E-02
81GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.37E-02
82GO:0050662: coenzyme binding1.42E-02
83GO:0004518: nuclease activity1.75E-02
84GO:0003690: double-stranded DNA binding1.76E-02
85GO:0008173: RNA methyltransferase activity1.81E-02
86GO:0000156: phosphorelay response regulator activity1.87E-02
87GO:0051015: actin filament binding1.87E-02
88GO:0004871: signal transducer activity1.94E-02
89GO:0016759: cellulose synthase activity1.99E-02
90GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity2.06E-02
91GO:0003747: translation release factor activity2.06E-02
92GO:0005200: structural constituent of cytoskeleton2.11E-02
93GO:0004673: protein histidine kinase activity2.60E-02
94GO:0030234: enzyme regulator activity2.60E-02
95GO:0008047: enzyme activator activity2.60E-02
96GO:0015035: protein disulfide oxidoreductase activity2.73E-02
97GO:0030247: polysaccharide binding2.80E-02
98GO:0102483: scopolin beta-glucosidase activity2.80E-02
99GO:0000049: tRNA binding3.17E-02
100GO:0015095: magnesium ion transmembrane transporter activity3.48E-02
101GO:0031072: heat shock protein binding3.48E-02
102GO:0000155: phosphorelay sensor kinase activity3.48E-02
103GO:0016614: oxidoreductase activity, acting on CH-OH group of donors3.59E-02
104GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen3.60E-02
105GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors3.93E-02
106GO:0003700: transcription factor activity, sequence-specific DNA binding4.06E-02
107GO:0008146: sulfotransferase activity4.11E-02
108GO:0003712: transcription cofactor activity4.11E-02
109GO:0008422: beta-glucosidase activity4.29E-02
110GO:0102337: 3-oxo-cerotoyl-CoA synthase activity4.44E-02
111GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity4.44E-02
112GO:0102336: 3-oxo-arachidoyl-CoA synthase activity4.44E-02
113GO:0050661: NADP binding4.47E-02
114GO:0051536: iron-sulfur cluster binding4.78E-02
115GO:0031418: L-ascorbic acid binding4.78E-02
116GO:0005528: FK506 binding4.78E-02
RankGO TermAdjusted P value
1GO:0000408: EKC/KEOPS complex0.00E+00
2GO:0009537: proplastid0.00E+00
3GO:0009501: amyloplast9.20E-05
4GO:0009507: chloroplast1.81E-04
5GO:0043240: Fanconi anaemia nuclear complex8.29E-04
6GO:0032541: cortical endoplasmic reticulum8.29E-04
7GO:0071821: FANCM-MHF complex8.29E-04
8GO:0009513: etioplast1.80E-03
9GO:0009509: chromoplast2.98E-03
10GO:0030139: endocytic vesicle2.98E-03
11GO:0009528: plastid inner membrane2.98E-03
12GO:0009508: plastid chromosome4.15E-03
13GO:0032585: multivesicular body membrane4.34E-03
14GO:0032432: actin filament bundle4.34E-03
15GO:0009544: chloroplast ATP synthase complex5.87E-03
16GO:0009527: plastid outer membrane5.87E-03
17GO:0009898: cytoplasmic side of plasma membrane5.87E-03
18GO:0009707: chloroplast outer membrane6.10E-03
19GO:0009654: photosystem II oxygen evolving complex7.24E-03
20GO:0009532: plastid stroma7.97E-03
21GO:0015629: actin cytoskeleton9.55E-03
22GO:0009986: cell surface1.35E-02
23GO:0019898: extrinsic component of membrane1.53E-02
24GO:0048226: Casparian strip1.58E-02
25GO:0042644: chloroplast nucleoid2.06E-02
26GO:0010494: cytoplasmic stress granule2.06E-02
27GO:0009295: nucleoid2.11E-02
28GO:0005886: plasma membrane2.65E-02
29GO:0005884: actin filament2.88E-02
30GO:0005578: proteinaceous extracellular matrix3.48E-02
31GO:0030095: chloroplast photosystem II3.79E-02
32GO:0005875: microtubule associated complex4.44E-02
33GO:0005759: mitochondrial matrix4.61E-02
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Gene type



Gene DE type