co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G06970

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
2	GO:0030155: regulation of cell adhesion	0.00E+00
3	GO:0007638: mechanosensory behavior	0.00E+00
4	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
5	GO:0017038: protein import	0.00E+00
6	GO:1902326: positive regulation of chlorophyll biosynthetic process	6.64E-07
7	GO:0009658: chloroplast organization	3.76E-05
8	GO:0010103: stomatal complex morphogenesis	5.34E-05
9	GO:0010027: thylakoid membrane organization	9.90E-05
10	GO:0048507: meristem development	1.08E-04
11	GO:0000305: response to oxygen radical	1.14E-04
12	GO:0031426: polycistronic mRNA processing	1.14E-04
13	GO:1904966: positive regulation of vitamin E biosynthetic process	1.14E-04
14	GO:0043266: regulation of potassium ion transport	1.14E-04
15	GO:0010063: positive regulation of trichoblast fate specification	1.14E-04
16	GO:1904964: positive regulation of phytol biosynthetic process	1.14E-04
17	GO:2000021: regulation of ion homeostasis	1.14E-04
18	GO:1902458: positive regulation of stomatal opening	1.14E-04
19	GO:0015995: chlorophyll biosynthetic process	1.26E-04
20	GO:0060359: response to ammonium ion	2.65E-04
21	GO:1904143: positive regulation of carotenoid biosynthetic process	2.65E-04
22	GO:1903426: regulation of reactive oxygen species biosynthetic process	2.65E-04
23	GO:0010207: photosystem II assembly	2.74E-04
24	GO:0007017: microtubule-based process	4.22E-04
25	GO:0048281: inflorescence morphogenesis	4.38E-04
26	GO:0043157: response to cation stress	4.38E-04
27	GO:0005977: glycogen metabolic process	4.38E-04
28	GO:0009102: biotin biosynthetic process	6.29E-04
29	GO:0010239: chloroplast mRNA processing	6.29E-04
30	GO:0019048: modulation by virus of host morphology or physiology	6.29E-04
31	GO:0031048: chromatin silencing by small RNA	6.29E-04
32	GO:0010148: transpiration	6.29E-04
33	GO:0016556: mRNA modification	6.29E-04
34	GO:0043572: plastid fission	6.29E-04
35	GO:0010071: root meristem specification	6.29E-04
36	GO:0007231: osmosensory signaling pathway	6.29E-04
37	GO:0010305: leaf vascular tissue pattern formation	7.50E-04
38	GO:0009646: response to absence of light	8.05E-04
39	GO:0006661: phosphatidylinositol biosynthetic process	8.35E-04
40	GO:0009765: photosynthesis, light harvesting	8.35E-04
41	GO:0006109: regulation of carbohydrate metabolic process	8.35E-04
42	GO:0022622: root system development	8.35E-04
43	GO:0051567: histone H3-K9 methylation	8.35E-04
44	GO:0008295: spermidine biosynthetic process	8.35E-04
45	GO:2000122: negative regulation of stomatal complex development	8.35E-04
46	GO:0006749: glutathione metabolic process	8.35E-04
47	GO:0033500: carbohydrate homeostasis	8.35E-04
48	GO:0010021: amylopectin biosynthetic process	8.35E-04
49	GO:0010109: regulation of photosynthesis	8.35E-04
50	GO:0010375: stomatal complex patterning	1.05E-03
51	GO:0045038: protein import into chloroplast thylakoid membrane	1.05E-03
52	GO:0016123: xanthophyll biosynthetic process	1.05E-03
53	GO:0009959: negative gravitropism	1.29E-03
54	GO:0016458: gene silencing	1.29E-03
55	GO:1901259: chloroplast rRNA processing	1.54E-03
56	GO:0042372: phylloquinone biosynthetic process	1.54E-03
57	GO:0048280: vesicle fusion with Golgi apparatus	1.54E-03
58	GO:0007166: cell surface receptor signaling pathway	1.54E-03
59	GO:0048481: plant ovule development	1.69E-03
60	GO:0048437: floral organ development	1.81E-03
61	GO:0070370: cellular heat acclimation	1.81E-03
62	GO:0010444: guard mother cell differentiation	1.81E-03
63	GO:0032880: regulation of protein localization	1.81E-03
64	GO:0010374: stomatal complex development	1.81E-03
65	GO:0009416: response to light stimulus	2.09E-03
66	GO:0007155: cell adhesion	2.09E-03
67	GO:0048564: photosystem I assembly	2.09E-03
68	GO:0006605: protein targeting	2.09E-03
69	GO:2000070: regulation of response to water deprivation	2.09E-03
70	GO:0015996: chlorophyll catabolic process	2.39E-03
71	GO:0007186: G-protein coupled receptor signaling pathway	2.39E-03
72	GO:0001558: regulation of cell growth	2.39E-03
73	GO:0010052: guard cell differentiation	2.39E-03
74	GO:0000902: cell morphogenesis	2.70E-03
75	GO:0006779: porphyrin-containing compound biosynthetic process	3.02E-03
76	GO:0071577: zinc II ion transmembrane transport	3.02E-03
77	GO:0006896: Golgi to vacuole transport	3.36E-03
78	GO:0006782: protoporphyrinogen IX biosynthetic process	3.36E-03
79	GO:0030422: production of siRNA involved in RNA interference	3.36E-03
80	GO:0006816: calcium ion transport	3.71E-03
81	GO:0043085: positive regulation of catalytic activity	3.71E-03
82	GO:0045037: protein import into chloroplast stroma	4.06E-03
83	GO:2000012: regulation of auxin polar transport	4.43E-03
84	GO:0050826: response to freezing	4.43E-03
85	GO:0009718: anthocyanin-containing compound biosynthetic process	4.43E-03
86	GO:0010020: chloroplast fission	4.81E-03
87	GO:0009969: xyloglucan biosynthetic process	5.21E-03
88	GO:0010030: positive regulation of seed germination	5.21E-03
89	GO:0070588: calcium ion transmembrane transport	5.21E-03
90	GO:0009742: brassinosteroid mediated signaling pathway	5.53E-03
91	GO:0009944: polarity specification of adaxial/abaxial axis	6.03E-03
92	GO:0051302: regulation of cell division	6.45E-03
93	GO:0006825: copper ion transport	6.45E-03
94	GO:0006468: protein phosphorylation	6.60E-03
95	GO:0006306: DNA methylation	6.89E-03
96	GO:0030245: cellulose catabolic process	7.34E-03
97	GO:0009790: embryo development	7.61E-03
98	GO:0009686: gibberellin biosynthetic process	7.79E-03
99	GO:0001944: vasculature development	7.79E-03
100	GO:0042127: regulation of cell proliferation	8.26E-03
101	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	8.74E-03
102	GO:0042147: retrograde transport, endosome to Golgi	8.74E-03
103	GO:0008284: positive regulation of cell proliferation	8.74E-03
104	GO:0042631: cellular response to water deprivation	9.23E-03
105	GO:0010268: brassinosteroid homeostasis	9.73E-03
106	GO:0009958: positive gravitropism	9.73E-03
107	GO:0006662: glycerol ether metabolic process	9.73E-03
108	GO:0010182: sugar mediated signaling pathway	9.73E-03
109	GO:0006342: chromatin silencing	9.73E-03
110	GO:0009741: response to brassinosteroid	9.73E-03
111	GO:0006623: protein targeting to vacuole	1.08E-02
112	GO:0009791: post-embryonic development	1.08E-02
113	GO:0019252: starch biosynthetic process	1.08E-02
114	GO:0008654: phospholipid biosynthetic process	1.08E-02
115	GO:0006891: intra-Golgi vesicle-mediated transport	1.13E-02
116	GO:0016132: brassinosteroid biosynthetic process	1.13E-02
117	GO:0010583: response to cyclopentenone	1.18E-02
118	GO:0016032: viral process	1.18E-02
119	GO:0032502: developmental process	1.18E-02
120	GO:0009630: gravitropism	1.18E-02
121	GO:0010090: trichome morphogenesis	1.24E-02
122	GO:0016125: sterol metabolic process	1.29E-02
123	GO:0051607: defense response to virus	1.40E-02
124	GO:0009816: defense response to bacterium, incompatible interaction	1.52E-02
125	GO:0006888: ER to Golgi vesicle-mediated transport	1.64E-02
126	GO:0016311: dephosphorylation	1.70E-02
127	GO:0080167: response to karrikin	1.74E-02
128	GO:0018298: protein-chromophore linkage	1.77E-02
129	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.79E-02
130	GO:0009813: flavonoid biosynthetic process	1.83E-02
131	GO:0009832: plant-type cell wall biogenesis	1.83E-02
132	GO:0009407: toxin catabolic process	1.89E-02
133	GO:0009910: negative regulation of flower development	1.96E-02
134	GO:0048527: lateral root development	1.96E-02
135	GO:0015979: photosynthesis	1.98E-02
136	GO:0006865: amino acid transport	2.02E-02
137	GO:0045454: cell redox homeostasis	2.08E-02
138	GO:0016051: carbohydrate biosynthetic process	2.09E-02
139	GO:0006886: intracellular protein transport	2.14E-02
140	GO:0034599: cellular response to oxidative stress	2.16E-02
141	GO:0006839: mitochondrial transport	2.29E-02
142	GO:0030001: metal ion transport	2.29E-02
143	GO:0071555: cell wall organization	2.45E-02
144	GO:0009640: photomorphogenesis	2.50E-02
145	GO:0009636: response to toxic substance	2.72E-02
146	GO:0009965: leaf morphogenesis	2.72E-02
147	GO:0006855: drug transmembrane transport	2.79E-02
148	GO:0042538: hyperosmotic salinity response	2.94E-02
149	GO:0006812: cation transport	2.94E-02
150	GO:0009664: plant-type cell wall organization	2.94E-02
151	GO:0006364: rRNA processing	3.09E-02
152	GO:0006486: protein glycosylation	3.09E-02
153	GO:0051603: proteolysis involved in cellular protein catabolic process	3.17E-02
154	GO:0006857: oligopeptide transport	3.25E-02
155	GO:0006508: proteolysis	3.28E-02
156	GO:0006417: regulation of translation	3.33E-02
157	GO:0043086: negative regulation of catalytic activity	3.49E-02
158	GO:0048367: shoot system development	3.57E-02
159	GO:0009553: embryo sac development	3.89E-02

Rank	GO Term	Adjusted P value
1	GO:0004076: biotin synthase activity	0.00E+00
2	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
3	GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity	1.14E-04
4	GO:0051777: ent-kaurenoate oxidase activity	1.14E-04
5	GO:0005080: protein kinase C binding	1.14E-04
6	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	1.14E-04
7	GO:0004766: spermidine synthase activity	2.65E-04
8	GO:0019156: isoamylase activity	2.65E-04
9	GO:0004362: glutathione-disulfide reductase activity	2.65E-04
10	GO:0015462: ATPase-coupled protein transmembrane transporter activity	4.38E-04
11	GO:0004180: carboxypeptidase activity	4.38E-04
12	GO:0016805: dipeptidase activity	4.38E-04
13	GO:0048027: mRNA 5'-UTR binding	6.29E-04
14	GO:0035197: siRNA binding	6.29E-04
15	GO:0016851: magnesium chelatase activity	6.29E-04
16	GO:0019199: transmembrane receptor protein kinase activity	8.35E-04
17	GO:0043495: protein anchor	8.35E-04
18	GO:0045430: chalcone isomerase activity	8.35E-04
19	GO:0042277: peptide binding	8.35E-04
20	GO:0005275: amine transmembrane transporter activity	1.05E-03
21	GO:0005200: structural constituent of cytoskeleton	1.17E-03
22	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.19E-03
23	GO:0004556: alpha-amylase activity	1.29E-03
24	GO:0016208: AMP binding	1.29E-03
25	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.54E-03
26	GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity	1.81E-03
27	GO:0019899: enzyme binding	1.81E-03
28	GO:0004222: metalloendopeptidase activity	1.86E-03
29	GO:0003993: acid phosphatase activity	2.23E-03
30	GO:0008417: fucosyltransferase activity	2.70E-03
31	GO:0008047: enzyme activator activity	3.36E-03
32	GO:0015020: glucuronosyltransferase activity	3.36E-03
33	GO:0004521: endoribonuclease activity	4.06E-03
34	GO:0031072: heat shock protein binding	4.43E-03
35	GO:0005262: calcium channel activity	4.43E-03
36	GO:0005525: GTP binding	4.46E-03
37	GO:0008083: growth factor activity	4.81E-03
38	GO:0003924: GTPase activity	4.85E-03
39	GO:0005385: zinc ion transmembrane transporter activity	6.03E-03
40	GO:0004857: enzyme inhibitor activity	6.03E-03
41	GO:0005528: FK506 binding	6.03E-03
42	GO:0008324: cation transmembrane transporter activity	6.45E-03
43	GO:0004176: ATP-dependent peptidase activity	6.89E-03
44	GO:0030570: pectate lyase activity	7.79E-03
45	GO:0008810: cellulase activity	7.79E-03
46	GO:0022891: substrate-specific transmembrane transporter activity	7.79E-03
47	GO:0003727: single-stranded RNA binding	8.26E-03
48	GO:0047134: protein-disulfide reductase activity	8.74E-03
49	GO:0005524: ATP binding	9.33E-03
50	GO:0008080: N-acetyltransferase activity	9.73E-03
51	GO:0004791: thioredoxin-disulfide reductase activity	1.02E-02
52	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.24E-02
53	GO:0008483: transaminase activity	1.35E-02
54	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.35E-02
55	GO:0008237: metallopeptidase activity	1.35E-02
56	GO:0016597: amino acid binding	1.40E-02
57	GO:0016168: chlorophyll binding	1.52E-02
58	GO:0008375: acetylglucosaminyltransferase activity	1.58E-02
59	GO:0015238: drug transmembrane transporter activity	1.83E-02
60	GO:0003697: single-stranded DNA binding	2.09E-02
61	GO:0000149: SNARE binding	2.22E-02
62	GO:0050661: NADP binding	2.29E-02
63	GO:0051539: 4 iron, 4 sulfur cluster binding	2.29E-02
64	GO:0004364: glutathione transferase activity	2.43E-02
65	GO:0005484: SNAP receptor activity	2.50E-02
66	GO:0004185: serine-type carboxypeptidase activity	2.50E-02
67	GO:0035091: phosphatidylinositol binding	2.65E-02
68	GO:0051537: 2 iron, 2 sulfur cluster binding	2.65E-02
69	GO:0005215: transporter activity	2.78E-02
70	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.79E-02
71	GO:0004519: endonuclease activity	2.79E-02
72	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.09E-02
73	GO:0015171: amino acid transmembrane transporter activity	3.33E-02
74	GO:0004650: polygalacturonase activity	3.73E-02
75	GO:0051082: unfolded protein binding	3.98E-02
76	GO:0015035: protein disulfide oxidoreductase activity	4.06E-02
77	GO:0019843: rRNA binding	4.67E-02
78	GO:0016829: lyase activity	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009507: chloroplast	4.20E-07
3	GO:0009570: chloroplast stroma	5.50E-06
4	GO:0009941: chloroplast envelope	1.92E-04
5	GO:0009528: plastid inner membrane	4.38E-04
6	GO:0010007: magnesium chelatase complex	4.38E-04
7	GO:0005719: nuclear euchromatin	6.29E-04
8	GO:0015630: microtubule cytoskeleton	6.29E-04
9	GO:0030663: COPI-coated vesicle membrane	8.35E-04
10	GO:0009527: plastid outer membrane	8.35E-04
11	GO:0016021: integral component of membrane	8.66E-04
12	GO:0010319: stromule	1.17E-03
13	GO:0012507: ER to Golgi transport vesicle membrane	2.09E-03
14	GO:0042644: chloroplast nucleoid	2.70E-03
15	GO:0045298: tubulin complex	2.70E-03
16	GO:0031969: chloroplast membrane	2.96E-03
17	GO:0015030: Cajal body	3.02E-03
18	GO:0030125: clathrin vesicle coat	3.36E-03
19	GO:0000418: DNA-directed RNA polymerase IV complex	3.36E-03
20	GO:0005886: plasma membrane	4.51E-03
21	GO:0009706: chloroplast inner membrane	5.21E-03
22	GO:0009535: chloroplast thylakoid membrane	5.95E-03
23	GO:0042651: thylakoid membrane	6.45E-03
24	GO:0009532: plastid stroma	6.89E-03
25	GO:0009705: plant-type vacuole membrane	9.00E-03
26	GO:0009523: photosystem II	1.08E-02
27	GO:0032580: Golgi cisterna membrane	1.29E-02
28	GO:0005778: peroxisomal membrane	1.35E-02
29	GO:0030529: intracellular ribonucleoprotein complex	1.46E-02
30	GO:0005874: microtubule	1.68E-02
31	GO:0009707: chloroplast outer membrane	1.77E-02
32	GO:0031201: SNARE complex	2.36E-02
33	GO:0031902: late endosome membrane	2.36E-02
34	GO:0043231: intracellular membrane-bounded organelle	2.83E-02
35	GO:0009505: plant-type cell wall	3.25E-02
36	GO:0005789: endoplasmic reticulum membrane	4.15E-02
37	GO:0016020: membrane	4.38E-02
38	GO:0005654: nucleoplasm	4.58E-02
39	GO:0009543: chloroplast thylakoid lumen	4.67E-02