co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G06960

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000068: regulation of defense response to insect	0.00E+00
2	GO:0006654: phosphatidic acid biosynthetic process	0.00E+00
3	GO:0090480: purine nucleotide-sugar transmembrane transport	0.00E+00
4	GO:1902289: negative regulation of defense response to oomycetes	0.00E+00
5	GO:0098755: maintenance of seed dormancy by absisic acid	0.00E+00
6	GO:0005993: trehalose catabolic process	0.00E+00
7	GO:2000378: negative regulation of reactive oxygen species metabolic process	0.00E+00
8	GO:0052386: cell wall thickening	0.00E+00
9	GO:0019427: acetyl-CoA biosynthetic process from acetate	0.00E+00
10	GO:0043619: regulation of transcription from RNA polymerase II promoter in response to oxidative stress	0.00E+00
11	GO:0010401: pectic galactan metabolic process	0.00E+00
12	GO:0080149: sucrose induced translational repression	0.00E+00
13	GO:0006983: ER overload response	0.00E+00
14	GO:1902009: positive regulation of toxin transport	0.00E+00
15	GO:0051553: flavone biosynthetic process	0.00E+00
16	GO:0030150: protein import into mitochondrial matrix	4.88E-05
17	GO:0006631: fatty acid metabolic process	7.57E-05
18	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	1.73E-04
19	GO:0034975: protein folding in endoplasmic reticulum	2.06E-04
20	GO:0016337: single organismal cell-cell adhesion	2.06E-04
21	GO:1990641: response to iron ion starvation	2.06E-04
22	GO:0043182: vacuolar sequestering of sodium ion	2.06E-04
23	GO:0046246: terpene biosynthetic process	2.06E-04
24	GO:0051090: regulation of sequence-specific DNA binding transcription factor activity	2.06E-04
25	GO:0006083: acetate metabolic process	2.06E-04
26	GO:0015031: protein transport	2.15E-04
27	GO:0008202: steroid metabolic process	3.11E-04
28	GO:0010155: regulation of proton transport	4.62E-04
29	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	4.62E-04
30	GO:0006568: tryptophan metabolic process	4.62E-04
31	GO:0006024: glycosaminoglycan biosynthetic process	4.62E-04
32	GO:0052541: plant-type cell wall cellulose metabolic process	4.62E-04
33	GO:0042853: L-alanine catabolic process	4.62E-04
34	GO:0006101: citrate metabolic process	4.62E-04
35	GO:0043066: negative regulation of apoptotic process	4.62E-04
36	GO:0015012: heparan sulfate proteoglycan biosynthetic process	4.62E-04
37	GO:0071398: cellular response to fatty acid	7.52E-04
38	GO:0015783: GDP-fucose transport	7.52E-04
39	GO:0032504: multicellular organism reproduction	7.52E-04
40	GO:0010476: gibberellin mediated signaling pathway	7.52E-04
41	GO:0010325: raffinose family oligosaccharide biosynthetic process	7.52E-04
42	GO:0080163: regulation of protein serine/threonine phosphatase activity	7.52E-04
43	GO:0051707: response to other organism	8.26E-04
44	GO:0002239: response to oomycetes	1.07E-03
45	GO:0072334: UDP-galactose transmembrane transport	1.07E-03
46	GO:0009963: positive regulation of flavonoid biosynthetic process	1.07E-03
47	GO:0071323: cellular response to chitin	1.07E-03
48	GO:0080024: indolebutyric acid metabolic process	1.07E-03
49	GO:0055070: copper ion homeostasis	1.07E-03
50	GO:0001676: long-chain fatty acid metabolic process	1.07E-03
51	GO:0031348: negative regulation of defense response	1.12E-03
52	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	1.43E-03
53	GO:0006621: protein retention in ER lumen	1.43E-03
54	GO:1901002: positive regulation of response to salt stress	1.43E-03
55	GO:0015867: ATP transport	1.43E-03
56	GO:0009620: response to fungus	1.66E-03
57	GO:0006097: glyoxylate cycle	1.81E-03
58	GO:0009229: thiamine diphosphate biosynthetic process	1.81E-03
59	GO:0006665: sphingolipid metabolic process	1.81E-03
60	GO:0006623: protein targeting to vacuole	1.91E-03
61	GO:0007275: multicellular organism development	2.12E-03
62	GO:0015866: ADP transport	2.24E-03
63	GO:0047484: regulation of response to osmotic stress	2.24E-03
64	GO:0009228: thiamine biosynthetic process	2.24E-03
65	GO:1900425: negative regulation of defense response to bacterium	2.24E-03
66	GO:0006014: D-ribose metabolic process	2.24E-03
67	GO:0009759: indole glucosinolate biosynthetic process	2.24E-03
68	GO:0006464: cellular protein modification process	2.46E-03
69	GO:0048444: floral organ morphogenesis	2.69E-03
70	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	2.69E-03
71	GO:0030643: cellular phosphate ion homeostasis	2.69E-03
72	GO:0017148: negative regulation of translation	2.69E-03
73	GO:0010044: response to aluminum ion	3.16E-03
74	GO:0006333: chromatin assembly or disassembly	3.16E-03
75	GO:0006413: translational initiation	3.40E-03
76	GO:0016311: dephosphorylation	3.63E-03
77	GO:0006102: isocitrate metabolic process	3.67E-03
78	GO:0016559: peroxisome fission	3.67E-03
79	GO:0007155: cell adhesion	3.67E-03
80	GO:0009850: auxin metabolic process	3.67E-03
81	GO:0006605: protein targeting	3.67E-03
82	GO:0008219: cell death	3.82E-03
83	GO:0006367: transcription initiation from RNA polymerase II promoter	4.20E-03
84	GO:0010417: glucuronoxylan biosynthetic process	4.20E-03
85	GO:0030968: endoplasmic reticulum unfolded protein response	4.20E-03
86	GO:0006470: protein dephosphorylation	4.41E-03
87	GO:0009056: catabolic process	4.75E-03
88	GO:0015780: nucleotide-sugar transport	4.75E-03
89	GO:0009835: fruit ripening	4.75E-03
90	GO:0007338: single fertilization	4.75E-03
91	GO:0009086: methionine biosynthetic process	5.32E-03
92	GO:0010629: negative regulation of gene expression	5.93E-03
93	GO:0051555: flavonol biosynthetic process	5.93E-03
94	GO:0043069: negative regulation of programmed cell death	5.93E-03
95	GO:0000038: very long-chain fatty acid metabolic process	6.55E-03
96	GO:0009738: abscisic acid-activated signaling pathway	7.08E-03
97	GO:0000266: mitochondrial fission	7.20E-03
98	GO:0045037: protein import into chloroplast stroma	7.20E-03
99	GO:2000012: regulation of auxin polar transport	7.87E-03
100	GO:0010102: lateral root morphogenesis	7.87E-03
101	GO:0002237: response to molecule of bacterial origin	8.56E-03
102	GO:0010224: response to UV-B	8.70E-03
103	GO:0016192: vesicle-mediated transport	9.09E-03
104	GO:0090351: seedling development	9.27E-03
105	GO:0044550: secondary metabolite biosynthetic process	9.48E-03
106	GO:0000162: tryptophan biosynthetic process	1.00E-02
107	GO:0034976: response to endoplasmic reticulum stress	1.00E-02
108	GO:0000027: ribosomal large subunit assembly	1.08E-02
109	GO:0006289: nucleotide-excision repair	1.08E-02
110	GO:0006457: protein folding	1.10E-02
111	GO:0006886: intracellular protein transport	1.12E-02
112	GO:0006334: nucleosome assembly	1.23E-02
113	GO:0009269: response to desiccation	1.23E-02
114	GO:0016114: terpenoid biosynthetic process	1.23E-02
115	GO:0009693: ethylene biosynthetic process	1.40E-02
116	GO:0009408: response to heat	1.40E-02
117	GO:0009411: response to UV	1.40E-02
118	GO:0010087: phloem or xylem histogenesis	1.66E-02
119	GO:0010051: xylem and phloem pattern formation	1.66E-02
120	GO:0045489: pectin biosynthetic process	1.75E-02
121	GO:0010197: polar nucleus fusion	1.75E-02
122	GO:0019252: starch biosynthetic process	1.94E-02
123	GO:0071554: cell wall organization or biogenesis	2.03E-02
124	GO:0002229: defense response to oomycetes	2.03E-02
125	GO:0010193: response to ozone	2.03E-02
126	GO:0006635: fatty acid beta-oxidation	2.03E-02
127	GO:0032502: developmental process	2.13E-02
128	GO:0016032: viral process	2.13E-02
129	GO:0006979: response to oxidative stress	2.18E-02
130	GO:0030163: protein catabolic process	2.23E-02
131	GO:0009567: double fertilization forming a zygote and endosperm	2.33E-02
132	GO:0007166: cell surface receptor signaling pathway	2.38E-02
133	GO:0009617: response to bacterium	2.48E-02
134	GO:0001666: response to hypoxia	2.64E-02
135	GO:0009607: response to biotic stimulus	2.75E-02
136	GO:0010029: regulation of seed germination	2.75E-02
137	GO:0009816: defense response to bacterium, incompatible interaction	2.75E-02
138	GO:0009817: defense response to fungus, incompatible interaction	3.19E-02
139	GO:0009813: flavonoid biosynthetic process	3.31E-02
140	GO:0000724: double-strand break repair via homologous recombination	3.66E-02
141	GO:0009637: response to blue light	3.78E-02
142	GO:0009867: jasmonic acid mediated signaling pathway	3.78E-02
143	GO:0045087: innate immune response	3.78E-02
144	GO:0016051: carbohydrate biosynthetic process	3.78E-02
145	GO:0006099: tricarboxylic acid cycle	3.90E-02
146	GO:0006839: mitochondrial transport	4.15E-02
147	GO:0006508: proteolysis	4.25E-02
148	GO:0042542: response to hydrogen peroxide	4.40E-02
149	GO:0009744: response to sucrose	4.52E-02
150	GO:0010114: response to red light	4.52E-02
151	GO:0006952: defense response	4.73E-02
152	GO:0008643: carbohydrate transport	4.78E-02
153	GO:0009636: response to toxic substance	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0034338: short-chain carboxylesterase activity	0.00E+00
2	GO:0033759: flavone synthase activity	0.00E+00
3	GO:0097007: 4,8,12-trimethyltrideca-1,3,7,11-tetraene synthase activity	0.00E+00
4	GO:0055105: ubiquitin-protein transferase inhibitor activity	0.00E+00
5	GO:0052684: L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity	0.00E+00
6	GO:0004555: alpha,alpha-trehalase activity	0.00E+00
7	GO:0050334: thiaminase activity	0.00E+00
8	GO:0005046: KDEL sequence binding	0.00E+00
9	GO:0061133: endopeptidase activator activity	0.00E+00
10	GO:0097008: (3E)-4,8-dimethyl-1,3,7-nonatriene synthase activity	0.00E+00
11	GO:0031418: L-ascorbic acid binding	4.88E-05
12	GO:0102391: decanoate--CoA ligase activity	1.02E-04
13	GO:0004656: procollagen-proline 4-dioxygenase activity	1.02E-04
14	GO:0004467: long-chain fatty acid-CoA ligase activity	1.35E-04
15	GO:0003987: acetate-CoA ligase activity	2.06E-04
16	GO:0015927: trehalase activity	2.06E-04
17	GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity	2.06E-04
18	GO:0047150: betaine-homocysteine S-methyltransferase activity	2.06E-04
19	GO:0016920: pyroglutamyl-peptidase activity	2.06E-04
20	GO:0008142: oxysterol binding	2.15E-04
21	GO:0010331: gibberellin binding	4.62E-04
22	GO:0003994: aconitate hydratase activity	4.62E-04
23	GO:0000774: adenyl-nucleotide exchange factor activity	4.62E-04
24	GO:0032934: sterol binding	4.62E-04
25	GO:0050736: O-malonyltransferase activity	4.62E-04
26	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	6.01E-04
27	GO:0005457: GDP-fucose transmembrane transporter activity	7.52E-04
28	GO:0035251: UDP-glucosyltransferase activity	1.02E-03
29	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	1.07E-03
30	GO:0035529: NADH pyrophosphatase activity	1.07E-03
31	GO:0030527: structural constituent of chromatin	1.07E-03
32	GO:0005460: UDP-glucose transmembrane transporter activity	1.07E-03
33	GO:0010178: IAA-amino acid conjugate hydrolase activity	1.07E-03
34	GO:0004834: tryptophan synthase activity	1.43E-03
35	GO:0046923: ER retention sequence binding	1.43E-03
36	GO:0070628: proteasome binding	1.43E-03
37	GO:0005459: UDP-galactose transmembrane transporter activity	1.81E-03
38	GO:0004623: phospholipase A2 activity	1.81E-03
39	GO:0047631: ADP-ribose diphosphatase activity	1.81E-03
40	GO:0051082: unfolded protein binding	1.86E-03
41	GO:0000210: NAD+ diphosphatase activity	2.24E-03
42	GO:0016208: AMP binding	2.24E-03
43	GO:0004722: protein serine/threonine phosphatase activity	2.61E-03
44	GO:0015217: ADP transmembrane transporter activity	2.69E-03
45	GO:0004747: ribokinase activity	2.69E-03
46	GO:0005347: ATP transmembrane transporter activity	2.69E-03
47	GO:0008320: protein transmembrane transporter activity	3.16E-03
48	GO:0015297: antiporter activity	3.51E-03
49	GO:0047893: flavonol 3-O-glucosyltransferase activity	3.67E-03
50	GO:0052747: sinapyl alcohol dehydrogenase activity	3.67E-03
51	GO:0008865: fructokinase activity	3.67E-03
52	GO:0004630: phospholipase D activity	4.20E-03
53	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	4.20E-03
54	GO:0003743: translation initiation factor activity	4.53E-03
55	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	4.75E-03
56	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	4.75E-03
57	GO:0003993: acid phosphatase activity	5.05E-03
58	GO:0004864: protein phosphatase inhibitor activity	5.93E-03
59	GO:0005506: iron ion binding	6.13E-03
60	GO:0045551: cinnamyl-alcohol dehydrogenase activity	7.20E-03
61	GO:0031072: heat shock protein binding	7.87E-03
62	GO:0015266: protein channel activity	7.87E-03
63	GO:0008061: chitin binding	9.27E-03
64	GO:0003712: transcription cofactor activity	9.27E-03
65	GO:0004725: protein tyrosine phosphatase activity	1.00E-02
66	GO:0043130: ubiquitin binding	1.08E-02
67	GO:0042803: protein homodimerization activity	1.14E-02
68	GO:0051087: chaperone binding	1.15E-02
69	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.32E-02
70	GO:0016758: transferase activity, transferring hexosyl groups	1.46E-02
71	GO:0003756: protein disulfide isomerase activity	1.48E-02
72	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.54E-02
73	GO:0005102: receptor binding	1.57E-02
74	GO:0030170: pyridoxal phosphate binding	1.67E-02
75	GO:0005509: calcium ion binding	1.91E-02
76	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.94E-02
77	GO:0004872: receptor activity	1.94E-02
78	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.23E-02
79	GO:0016791: phosphatase activity	2.33E-02
80	GO:0008237: metallopeptidase activity	2.43E-02
81	GO:0016413: O-acetyltransferase activity	2.54E-02
82	GO:0004806: triglyceride lipase activity	2.97E-02
83	GO:0030247: polysaccharide binding	2.97E-02
84	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.19E-02
85	GO:0015238: drug transmembrane transporter activity	3.31E-02
86	GO:0003682: chromatin binding	3.40E-02
87	GO:0004222: metalloendopeptidase activity	3.42E-02
88	GO:0016740: transferase activity	3.68E-02
89	GO:0005515: protein binding	3.98E-02
90	GO:0046872: metal ion binding	4.04E-02
91	GO:0051539: 4 iron, 4 sulfur cluster binding	4.15E-02
92	GO:0005507: copper ion binding	4.45E-02
93	GO:0019825: oxygen binding	4.45E-02
94	GO:0035091: phosphatidylinositol binding	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0005674: transcription factor TFIIF complex	0.00E+00
2	GO:0005789: endoplasmic reticulum membrane	1.49E-05
3	GO:0005801: cis-Golgi network	1.02E-04
4	GO:0016021: integral component of membrane	1.38E-04
5	GO:0005794: Golgi apparatus	1.54E-04
6	GO:0001405: presequence translocase-associated import motor	2.06E-04
7	GO:0005783: endoplasmic reticulum	2.66E-04
8	GO:0030665: clathrin-coated vesicle membrane	3.11E-04
9	GO:0017119: Golgi transport complex	3.65E-04
10	GO:0030134: ER to Golgi transport vesicle	4.62E-04
11	GO:0031902: late endosome membrane	7.46E-04
12	GO:0030658: transport vesicle membrane	1.07E-03
13	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.32E-03
14	GO:0000164: protein phosphatase type 1 complex	1.81E-03
15	GO:0005774: vacuolar membrane	2.52E-03
16	GO:0030173: integral component of Golgi membrane	2.69E-03
17	GO:0005743: mitochondrial inner membrane	2.79E-03
18	GO:0005788: endoplasmic reticulum lumen	3.10E-03
19	GO:0009986: cell surface	3.16E-03
20	GO:0000139: Golgi membrane	3.21E-03
21	GO:0031305: integral component of mitochondrial inner membrane	3.67E-03
22	GO:0009514: glyoxysome	4.20E-03
23	GO:0005779: integral component of peroxisomal membrane	4.20E-03
24	GO:0008541: proteasome regulatory particle, lid subcomplex	6.55E-03
25	GO:0005737: cytoplasm	8.83E-03
26	GO:0030176: integral component of endoplasmic reticulum membrane	9.27E-03
27	GO:0005741: mitochondrial outer membrane	1.23E-02
28	GO:0031410: cytoplasmic vesicle	1.32E-02
29	GO:0005623: cell	1.54E-02
30	GO:0016592: mediator complex	2.13E-02
31	GO:0000785: chromatin	2.13E-02
32	GO:0005778: peroxisomal membrane	2.43E-02
33	GO:0000151: ubiquitin ligase complex	3.19E-02
34	GO:0005777: peroxisome	3.42E-02
35	GO:0016020: membrane	3.48E-02
36	GO:0000325: plant-type vacuole	3.54E-02
37	GO:0022625: cytosolic large ribosomal subunit	4.18E-02