Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G06670

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070125: mitochondrial translational elongation0.00E+00
2GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
3GO:0000455: enzyme-directed rRNA pseudouridine synthesis0.00E+00
4GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
5GO:0000372: Group I intron splicing0.00E+00
6GO:1903224: regulation of endodermal cell differentiation0.00E+00
7GO:0007638: mechanosensory behavior0.00E+00
8GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
9GO:0045184: establishment of protein localization0.00E+00
10GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
11GO:0006907: pinocytosis0.00E+00
12GO:0009451: RNA modification4.07E-05
13GO:0009793: embryo development ending in seed dormancy7.39E-05
14GO:0009658: chloroplast organization1.30E-04
15GO:0016554: cytidine to uridine editing3.11E-04
16GO:0042793: transcription from plastid promoter3.11E-04
17GO:0035987: endodermal cell differentiation5.12E-04
18GO:0006436: tryptophanyl-tRNA aminoacylation5.12E-04
19GO:0090548: response to nitrate starvation5.12E-04
20GO:0034757: negative regulation of iron ion transport5.12E-04
21GO:0006419: alanyl-tRNA aminoacylation5.12E-04
22GO:0042659: regulation of cell fate specification5.12E-04
23GO:0070509: calcium ion import5.12E-04
24GO:0006438: valyl-tRNA aminoacylation5.12E-04
25GO:0090558: plant epidermis development5.12E-04
26GO:0043266: regulation of potassium ion transport5.12E-04
27GO:0010063: positive regulation of trichoblast fate specification5.12E-04
28GO:1902025: nitrate import5.12E-04
29GO:0043087: regulation of GTPase activity5.12E-04
30GO:2000021: regulation of ion homeostasis5.12E-04
31GO:0000105: histidine biosynthetic process6.64E-04
32GO:0032544: plastid translation8.09E-04
33GO:0009958: positive gravitropism8.14E-04
34GO:0000373: Group II intron splicing9.66E-04
35GO:0001682: tRNA 5'-leader removal1.10E-03
36GO:0006420: arginyl-tRNA aminoacylation1.10E-03
37GO:0043039: tRNA aminoacylation1.10E-03
38GO:0060359: response to ammonium ion1.10E-03
39GO:0048255: mRNA stabilization1.10E-03
40GO:0010271: regulation of chlorophyll catabolic process1.10E-03
41GO:0006432: phenylalanyl-tRNA aminoacylation1.10E-03
42GO:0018026: peptidyl-lysine monomethylation1.10E-03
43GO:0001736: establishment of planar polarity1.10E-03
44GO:0080009: mRNA methylation1.10E-03
45GO:0009786: regulation of asymmetric cell division1.10E-03
46GO:1900865: chloroplast RNA modification1.14E-03
47GO:0048829: root cap development1.33E-03
48GO:0007166: cell surface receptor signaling pathway1.44E-03
49GO:0043157: response to cation stress1.80E-03
50GO:0030029: actin filament-based process1.80E-03
51GO:0045910: negative regulation of DNA recombination1.80E-03
52GO:0031022: nuclear migration along microfilament1.80E-03
53GO:0090708: specification of plant organ axis polarity1.80E-03
54GO:0080117: secondary growth1.80E-03
55GO:0016045: detection of bacterium1.80E-03
56GO:0006696: ergosterol biosynthetic process1.80E-03
57GO:0048481: plant ovule development2.38E-03
58GO:0070588: calcium ion transmembrane transport2.53E-03
59GO:0000160: phosphorelay signal transduction system2.54E-03
60GO:0010311: lateral root formation2.54E-03
61GO:0010071: root meristem specification2.61E-03
62GO:0051513: regulation of monopolar cell growth2.61E-03
63GO:0007231: osmosensory signaling pathway2.61E-03
64GO:0051639: actin filament network formation2.61E-03
65GO:0034059: response to anoxia2.61E-03
66GO:0010239: chloroplast mRNA processing2.61E-03
67GO:0044211: CTP salvage2.61E-03
68GO:0007276: gamete generation2.61E-03
69GO:0019048: modulation by virus of host morphology or physiology2.61E-03
70GO:0006424: glutamyl-tRNA aminoacylation2.61E-03
71GO:2000904: regulation of starch metabolic process2.61E-03
72GO:0031048: chromatin silencing by small RNA2.61E-03
73GO:0006833: water transport2.82E-03
74GO:0051017: actin filament bundle assembly3.13E-03
75GO:0006418: tRNA aminoacylation for protein translation3.46E-03
76GO:0051764: actin crosslink formation3.52E-03
77GO:0030104: water homeostasis3.52E-03
78GO:0033500: carbohydrate homeostasis3.52E-03
79GO:0006021: inositol biosynthetic process3.52E-03
80GO:0051567: histone H3-K9 methylation3.52E-03
81GO:0008295: spermidine biosynthetic process3.52E-03
82GO:0044206: UMP salvage3.52E-03
83GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.82E-03
84GO:0009790: embryo development3.83E-03
85GO:0016123: xanthophyll biosynthetic process4.52E-03
86GO:0080110: sporopollenin biosynthetic process4.52E-03
87GO:0009696: salicylic acid metabolic process4.52E-03
88GO:0009904: chloroplast accumulation movement4.52E-03
89GO:0010082: regulation of root meristem growth4.54E-03
90GO:0040008: regulation of growth4.60E-03
91GO:0042127: regulation of cell proliferation4.94E-03
92GO:0016117: carotenoid biosynthetic process5.36E-03
93GO:0009959: negative gravitropism5.60E-03
94GO:0048831: regulation of shoot system development5.60E-03
95GO:0009920: cell plate formation involved in plant-type cell wall biogenesis5.60E-03
96GO:0006206: pyrimidine nucleobase metabolic process5.60E-03
97GO:0016458: gene silencing5.60E-03
98GO:0008033: tRNA processing5.80E-03
99GO:0010305: leaf vascular tissue pattern formation6.25E-03
100GO:0009416: response to light stimulus6.33E-03
101GO:0009736: cytokinin-activated signaling pathway6.54E-03
102GO:0009648: photoperiodism6.75E-03
103GO:2000067: regulation of root morphogenesis6.75E-03
104GO:0042372: phylloquinone biosynthetic process6.75E-03
105GO:0048509: regulation of meristem development6.75E-03
106GO:0009903: chloroplast avoidance movement6.75E-03
107GO:0048528: post-embryonic root development7.99E-03
108GO:1900056: negative regulation of leaf senescence7.99E-03
109GO:0010098: suspensor development7.99E-03
110GO:0048437: floral organ development7.99E-03
111GO:0006400: tRNA modification7.99E-03
112GO:0015693: magnesium ion transport7.99E-03
113GO:0055075: potassium ion homeostasis9.31E-03
114GO:0048564: photosystem I assembly9.31E-03
115GO:0001522: pseudouridine synthesis9.31E-03
116GO:0046620: regulation of organ growth9.31E-03
117GO:0070413: trehalose metabolism in response to stress9.31E-03
118GO:0010492: maintenance of shoot apical meristem identity9.31E-03
119GO:0051607: defense response to virus1.06E-02
120GO:0071482: cellular response to light stimulus1.07E-02
121GO:0019430: removal of superoxide radicals1.07E-02
122GO:0009657: plastid organization1.07E-02
123GO:0010027: thylakoid membrane organization1.12E-02
124GO:0000902: cell morphogenesis1.22E-02
125GO:0046916: cellular transition metal ion homeostasis1.22E-02
126GO:0048507: meristem development1.22E-02
127GO:0006468: protein phosphorylation1.25E-02
128GO:0009734: auxin-activated signaling pathway1.30E-02
129GO:0015995: chlorophyll biosynthetic process1.33E-02
130GO:0006779: porphyrin-containing compound biosynthetic process1.37E-02
131GO:0009098: leucine biosynthetic process1.37E-02
132GO:2000280: regulation of root development1.37E-02
133GO:0016571: histone methylation1.37E-02
134GO:0016573: histone acetylation1.37E-02
135GO:0016311: dephosphorylation1.40E-02
136GO:0006298: mismatch repair1.53E-02
137GO:0031627: telomeric loop formation1.53E-02
138GO:0009299: mRNA transcription1.53E-02
139GO:0006535: cysteine biosynthetic process from serine1.53E-02
140GO:0006782: protoporphyrinogen IX biosynthetic process1.53E-02
141GO:0030422: production of siRNA involved in RNA interference1.53E-02
142GO:0048765: root hair cell differentiation1.69E-02
143GO:0006816: calcium ion transport1.69E-02
144GO:0006415: translational termination1.69E-02
145GO:0009910: negative regulation of flower development1.70E-02
146GO:0006865: amino acid transport1.79E-02
147GO:0006790: sulfur compound metabolic process1.86E-02
148GO:0045037: protein import into chloroplast stroma1.86E-02
149GO:0009718: anthocyanin-containing compound biosynthetic process2.04E-02
150GO:0010075: regulation of meristem growth2.04E-02
151GO:0009725: response to hormone2.04E-02
152GO:0009691: cytokinin biosynthetic process2.04E-02
153GO:0009887: animal organ morphogenesis2.23E-02
154GO:0009266: response to temperature stimulus2.23E-02
155GO:0010207: photosystem II assembly2.23E-02
156GO:0010020: chloroplast fission2.23E-02
157GO:0046854: phosphatidylinositol phosphorylation2.41E-02
158GO:0009926: auxin polar transport2.41E-02
159GO:0000162: tryptophan biosynthetic process2.61E-02
160GO:0009636: response to toxic substance2.71E-02
161GO:0005992: trehalose biosynthetic process2.81E-02
162GO:0019344: cysteine biosynthetic process2.81E-02
163GO:0030150: protein import into mitochondrial matrix2.81E-02
164GO:0006338: chromatin remodeling2.81E-02
165GO:0007010: cytoskeleton organization2.81E-02
166GO:0006289: nucleotide-excision repair2.81E-02
167GO:0010073: meristem maintenance3.01E-02
168GO:0051302: regulation of cell division3.01E-02
169GO:0009733: response to auxin3.05E-02
170GO:0015992: proton transport3.22E-02
171GO:0006306: DNA methylation3.22E-02
172GO:0003333: amino acid transmembrane transport3.22E-02
173GO:0016226: iron-sulfur cluster assembly3.44E-02
174GO:0035428: hexose transmembrane transport3.44E-02
175GO:0007005: mitochondrion organization3.44E-02
176GO:0009909: regulation of flower development3.60E-02
177GO:0071215: cellular response to abscisic acid stimulus3.66E-02
178GO:0009294: DNA mediated transformation3.66E-02
179GO:0010584: pollen exine formation3.88E-02
180GO:0006284: base-excision repair3.88E-02
181GO:0048316: seed development3.96E-02
182GO:0070417: cellular response to cold4.11E-02
183GO:0010087: phloem or xylem histogenesis4.34E-02
184GO:0034220: ion transmembrane transport4.34E-02
185GO:0048366: leaf development4.35E-02
186GO:0046323: glucose import4.58E-02
187GO:0006342: chromatin silencing4.58E-02
188GO:0007018: microtubule-based movement4.82E-02
189GO:0009742: brassinosteroid mediated signaling pathway4.88E-02
RankGO TermAdjusted P value
1GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
2GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
3GO:0052834: inositol monophosphate phosphatase activity0.00E+00
4GO:0019144: ADP-sugar diphosphatase activity0.00E+00
5GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
6GO:0004401: histidinol-phosphatase activity0.00E+00
7GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
8GO:0046905: phytoene synthase activity0.00E+00
9GO:0047793: cycloeucalenol cycloisomerase activity0.00E+00
10GO:0003723: RNA binding1.29E-05
11GO:0004519: endonuclease activity3.31E-05
12GO:0001872: (1->3)-beta-D-glucan binding8.30E-05
13GO:0000049: tRNA binding1.46E-04
14GO:0019900: kinase binding4.15E-04
15GO:0010347: L-galactose-1-phosphate phosphatase activity5.12E-04
16GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity5.12E-04
17GO:0047259: glucomannan 4-beta-mannosyltransferase activity5.12E-04
18GO:0005227: calcium activated cation channel activity5.12E-04
19GO:0080042: ADP-glucose pyrophosphohydrolase activity5.12E-04
20GO:0004818: glutamate-tRNA ligase activity5.12E-04
21GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity5.12E-04
22GO:0004813: alanine-tRNA ligase activity5.12E-04
23GO:0004832: valine-tRNA ligase activity5.12E-04
24GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity5.12E-04
25GO:0052381: tRNA dimethylallyltransferase activity5.12E-04
26GO:0051996: squalene synthase activity5.12E-04
27GO:0004830: tryptophan-tRNA ligase activity5.12E-04
28GO:0005524: ATP binding5.80E-04
29GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.01E-03
30GO:0003852: 2-isopropylmalate synthase activity1.10E-03
31GO:0080041: ADP-ribose pyrophosphohydrolase activity1.10E-03
32GO:0043425: bHLH transcription factor binding1.10E-03
33GO:0004814: arginine-tRNA ligase activity1.10E-03
34GO:0004047: aminomethyltransferase activity1.10E-03
35GO:0004766: spermidine synthase activity1.10E-03
36GO:0052832: inositol monophosphate 3-phosphatase activity1.10E-03
37GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.10E-03
38GO:0008805: carbon-monoxide oxygenase activity1.10E-03
39GO:0008934: inositol monophosphate 1-phosphatase activity1.10E-03
40GO:0052833: inositol monophosphate 4-phosphatase activity1.10E-03
41GO:0004826: phenylalanine-tRNA ligase activity1.10E-03
42GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.10E-03
43GO:0004310: farnesyl-diphosphate farnesyltransferase activity1.10E-03
44GO:0050736: O-malonyltransferase activity1.10E-03
45GO:0009884: cytokinin receptor activity1.10E-03
46GO:0050017: L-3-cyanoalanine synthase activity1.10E-03
47GO:0004103: choline kinase activity1.10E-03
48GO:0051015: actin filament binding1.25E-03
49GO:0004180: carboxypeptidase activity1.80E-03
50GO:0003913: DNA photolyase activity1.80E-03
51GO:0004148: dihydrolipoyl dehydrogenase activity1.80E-03
52GO:0016805: dipeptidase activity1.80E-03
53GO:0005034: osmosensor activity1.80E-03
54GO:0031072: heat shock protein binding2.00E-03
55GO:0005262: calcium channel activity2.00E-03
56GO:0009982: pseudouridine synthase activity2.00E-03
57GO:0005096: GTPase activator activity2.54E-03
58GO:0080031: methyl salicylate esterase activity2.61E-03
59GO:0009678: hydrogen-translocating pyrophosphatase activity2.61E-03
60GO:0016149: translation release factor activity, codon specific2.61E-03
61GO:0035197: siRNA binding2.61E-03
62GO:0031418: L-ascorbic acid binding3.13E-03
63GO:0016279: protein-lysine N-methyltransferase activity3.52E-03
64GO:0004845: uracil phosphoribosyltransferase activity3.52E-03
65GO:0010011: auxin binding3.52E-03
66GO:0070628: proteasome binding3.52E-03
67GO:0010328: auxin influx transmembrane transporter activity3.52E-03
68GO:0019199: transmembrane receptor protein kinase activity3.52E-03
69GO:0042277: peptide binding3.52E-03
70GO:0004176: ATP-dependent peptidase activity3.80E-03
71GO:0008725: DNA-3-methyladenine glycosylase activity4.52E-03
72GO:0005471: ATP:ADP antiporter activity4.52E-03
73GO:0004812: aminoacyl-tRNA ligase activity5.36E-03
74GO:0030983: mismatched DNA binding5.60E-03
75GO:0080030: methyl indole-3-acetate esterase activity5.60E-03
76GO:0004526: ribonuclease P activity5.60E-03
77GO:0031593: polyubiquitin binding5.60E-03
78GO:0016208: AMP binding5.60E-03
79GO:0004784: superoxide dismutase activity5.60E-03
80GO:0004124: cysteine synthase activity6.75E-03
81GO:0051753: mannan synthase activity6.75E-03
82GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity6.75E-03
83GO:0004849: uridine kinase activity6.75E-03
84GO:0016832: aldehyde-lyase activity6.75E-03
85GO:0004656: procollagen-proline 4-dioxygenase activity6.75E-03
86GO:0003690: double-stranded DNA binding6.83E-03
87GO:0004427: inorganic diphosphatase activity7.99E-03
88GO:0009881: photoreceptor activity7.99E-03
89GO:0000156: phosphorelay response regulator activity8.82E-03
90GO:0004650: polygalacturonase activity9.14E-03
91GO:0003684: damaged DNA binding9.39E-03
92GO:0016791: phosphatase activity9.39E-03
93GO:0005200: structural constituent of cytoskeleton9.99E-03
94GO:0008237: metallopeptidase activity9.99E-03
95GO:0046914: transition metal ion binding1.07E-02
96GO:0003747: translation release factor activity1.22E-02
97GO:0030247: polysaccharide binding1.33E-02
98GO:0016829: lyase activity1.51E-02
99GO:0004673: protein histidine kinase activity1.53E-02
100GO:0004805: trehalose-phosphatase activity1.53E-02
101GO:0004222: metalloendopeptidase activity1.62E-02
102GO:0003691: double-stranded telomeric DNA binding1.69E-02
103GO:0004521: endoribonuclease activity1.86E-02
104GO:0003697: single-stranded DNA binding1.87E-02
105GO:0003993: acid phosphatase activity1.95E-02
106GO:0015095: magnesium ion transmembrane transporter activity2.04E-02
107GO:0000155: phosphorelay sensor kinase activity2.04E-02
108GO:0015266: protein channel activity2.04E-02
109GO:0005515: protein binding2.09E-02
110GO:0016301: kinase activity2.20E-02
111GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.23E-02
112GO:0008266: poly(U) RNA binding2.23E-02
113GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.61E-02
114GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.61E-02
115GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.61E-02
116GO:0043130: ubiquitin binding2.81E-02
117GO:0005528: FK506 binding2.81E-02
118GO:0043424: protein histidine kinase binding3.01E-02
119GO:0004707: MAP kinase activity3.22E-02
120GO:0033612: receptor serine/threonine kinase binding3.22E-02
121GO:0015171: amino acid transmembrane transporter activity3.60E-02
122GO:0030570: pectate lyase activity3.66E-02
123GO:0003727: single-stranded RNA binding3.88E-02
124GO:0003756: protein disulfide isomerase activity3.88E-02
125GO:0003779: actin binding4.48E-02
126GO:0016887: ATPase activity4.53E-02
127GO:0008536: Ran GTPase binding4.58E-02
128GO:0051082: unfolded protein binding4.61E-02
129GO:0005355: glucose transmembrane transporter activity4.82E-02
130GO:0050662: coenzyme binding4.82E-02
131GO:0010181: FMN binding4.82E-02
RankGO TermAdjusted P value
1GO:0000408: EKC/KEOPS complex0.00E+00
2GO:0009537: proplastid0.00E+00
3GO:0009507: chloroplast1.47E-15
4GO:0009508: plastid chromosome7.84E-06
5GO:0009295: nucleoid1.57E-05
6GO:0009941: chloroplast envelope6.62E-05
7GO:0005886: plasma membrane6.63E-05
8GO:0009986: cell surface5.33E-04
9GO:0009501: amyloplast6.64E-04
10GO:0031969: chloroplast membrane9.39E-04
11GO:0000427: plastid-encoded plastid RNA polymerase complex1.10E-03
12GO:0009513: etioplast1.10E-03
13GO:0031357: integral component of chloroplast inner membrane1.10E-03
14GO:0005884: actin filament1.53E-03
15GO:0030529: intracellular ribonucleoprotein complex1.69E-03
16GO:0009509: chromoplast1.80E-03
17GO:0030139: endocytic vesicle1.80E-03
18GO:0042646: plastid nucleoid2.61E-03
19GO:0032585: multivesicular body membrane2.61E-03
20GO:0032432: actin filament bundle2.61E-03
21GO:0005719: nuclear euchromatin2.61E-03
22GO:0030663: COPI-coated vesicle membrane3.52E-03
23GO:0009570: chloroplast stroma3.53E-03
24GO:0015629: actin cytoskeleton4.54E-03
25GO:0005856: cytoskeleton5.18E-03
26GO:0009534: chloroplast thylakoid9.15E-03
27GO:0048226: Casparian strip9.31E-03
28GO:0031305: integral component of mitochondrial inner membrane9.31E-03
29GO:0000783: nuclear telomere cap complex1.07E-02
30GO:0042644: chloroplast nucleoid1.22E-02
31GO:0015030: Cajal body1.37E-02
32GO:0009536: plastid1.43E-02
33GO:0000418: DNA-directed RNA polymerase IV complex1.53E-02
34GO:0030125: clathrin vesicle coat1.53E-02
35GO:0005759: mitochondrial matrix1.83E-02
36GO:0009574: preprophase band2.04E-02
37GO:0016602: CCAAT-binding factor complex2.04E-02
38GO:0030095: chloroplast photosystem II2.23E-02
39GO:0046658: anchored component of plasma membrane2.93E-02
40GO:0009654: photosystem II oxygen evolving complex3.01E-02
41GO:0009532: plastid stroma3.22E-02
42GO:0005744: mitochondrial inner membrane presequence translocase complex3.88E-02
43GO:0031225: anchored component of membrane4.05E-02
44GO:0005871: kinesin complex4.11E-02
45GO:0005874: microtubule4.44E-02
46GO:0009706: chloroplast inner membrane4.61E-02
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Gene type



Gene DE type