Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G06340

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0046460: neutral lipid biosynthetic process0.00E+00
2GO:0031116: positive regulation of microtubule polymerization0.00E+00
3GO:0043972: histone H3-K23 acetylation0.00E+00
4GO:0046396: D-galacturonate metabolic process0.00E+00
5GO:0044154: histone H3-K14 acetylation0.00E+00
6GO:1901698: response to nitrogen compound0.00E+00
7GO:0007155: cell adhesion5.89E-05
8GO:0010729: positive regulation of hydrogen peroxide biosynthetic process1.02E-04
9GO:0051171: regulation of nitrogen compound metabolic process1.02E-04
10GO:1902265: abscisic acid homeostasis1.02E-04
11GO:0043971: histone H3-K18 acetylation1.02E-04
12GO:1901135: carbohydrate derivative metabolic process1.02E-04
13GO:0048354: mucilage biosynthetic process involved in seed coat development1.12E-04
14GO:0010192: mucilage biosynthetic process1.33E-04
15GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation2.40E-04
16GO:0010275: NAD(P)H dehydrogenase complex assembly2.40E-04
17GO:0001578: microtubule bundle formation3.99E-04
18GO:0031022: nuclear migration along microfilament3.99E-04
19GO:0006013: mannose metabolic process3.99E-04
20GO:0071705: nitrogen compound transport3.99E-04
21GO:0010255: glucose mediated signaling pathway5.73E-04
22GO:0015846: polyamine transport7.62E-04
23GO:0009902: chloroplast relocation7.62E-04
24GO:0051322: anaphase7.62E-04
25GO:0071249: cellular response to nitrate7.62E-04
26GO:0007020: microtubule nucleation7.62E-04
27GO:0046785: microtubule polymerization9.62E-04
28GO:0009903: chloroplast avoidance movement1.40E-03
29GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity1.40E-03
30GO:0046835: carbohydrate phosphorylation1.40E-03
31GO:0034389: lipid particle organization1.40E-03
32GO:0048528: post-embryonic root development1.65E-03
33GO:0009704: de-etiolation1.90E-03
34GO:0009787: regulation of abscisic acid-activated signaling pathway1.90E-03
35GO:0006997: nucleus organization2.17E-03
36GO:0007389: pattern specification process2.17E-03
37GO:0044030: regulation of DNA methylation2.17E-03
38GO:0006002: fructose 6-phosphate metabolic process2.17E-03
39GO:0019432: triglyceride biosynthetic process2.45E-03
40GO:0008202: steroid metabolic process2.74E-03
41GO:0010380: regulation of chlorophyll biosynthetic process2.74E-03
42GO:0009750: response to fructose3.36E-03
43GO:0015706: nitrate transport3.69E-03
44GO:0030048: actin filament-based movement4.02E-03
45GO:0009740: gibberellic acid mediated signaling pathway4.26E-03
46GO:0009825: multidimensional cell growth4.72E-03
47GO:0080188: RNA-directed DNA methylation4.72E-03
48GO:0010167: response to nitrate4.72E-03
49GO:0006071: glycerol metabolic process5.09E-03
50GO:0010187: negative regulation of seed germination5.46E-03
51GO:0043622: cortical microtubule organization5.85E-03
52GO:0080092: regulation of pollen tube growth6.64E-03
53GO:0006012: galactose metabolic process7.06E-03
54GO:0007623: circadian rhythm7.80E-03
55GO:0009416: response to light stimulus8.38E-03
56GO:0009739: response to gibberellin8.73E-03
57GO:0048868: pollen tube development8.80E-03
58GO:0009749: response to glucose9.73E-03
59GO:0002229: defense response to oomycetes1.02E-02
60GO:0010583: response to cyclopentenone1.07E-02
61GO:0055085: transmembrane transport1.13E-02
62GO:0010252: auxin homeostasis1.17E-02
63GO:0000910: cytokinesis1.27E-02
64GO:0016126: sterol biosynthetic process1.32E-02
65GO:0010029: regulation of seed germination1.38E-02
66GO:0030244: cellulose biosynthetic process1.60E-02
67GO:0006811: ion transport1.71E-02
68GO:0009910: negative regulation of flower development1.77E-02
69GO:0009637: response to blue light1.89E-02
70GO:0009853: photorespiration1.89E-02
71GO:0008283: cell proliferation2.26E-02
72GO:0009926: auxin polar transport2.26E-02
73GO:0009744: response to sucrose2.26E-02
74GO:0051707: response to other organism2.26E-02
75GO:0009664: plant-type cell wall organization2.66E-02
76GO:0051603: proteolysis involved in cellular protein catabolic process2.86E-02
77GO:0006417: regulation of translation3.01E-02
78GO:0006096: glycolytic process3.15E-02
79GO:0005975: carbohydrate metabolic process3.45E-02
80GO:0009553: embryo sac development3.52E-02
81GO:0051726: regulation of cell cycle3.75E-02
82GO:0009738: abscisic acid-activated signaling pathway3.81E-02
83GO:0006468: protein phosphorylation3.85E-02
84GO:0009790: embryo development4.70E-02
RankGO TermAdjusted P value
1GO:0047912: galacturonokinase activity0.00E+00
2GO:0019808: polyamine binding0.00E+00
3GO:0097367: carbohydrate derivative binding1.02E-04
4GO:0004176: ATP-dependent peptidase activity4.03E-04
5GO:0000254: C-4 methylsterol oxidase activity5.73E-04
6GO:0004335: galactokinase activity7.62E-04
7GO:0080032: methyl jasmonate esterase activity7.62E-04
8GO:0010385: double-stranded methylated DNA binding7.62E-04
9GO:0004721: phosphoprotein phosphatase activity1.33E-03
10GO:0004144: diacylglycerol O-acyltransferase activity1.40E-03
11GO:0004559: alpha-mannosidase activity1.40E-03
12GO:0019899: enzyme binding1.65E-03
13GO:0003872: 6-phosphofructokinase activity1.65E-03
14GO:0008142: oxysterol binding2.17E-03
15GO:0009672: auxin:proton symporter activity2.74E-03
16GO:0015020: glucuronosyltransferase activity3.05E-03
17GO:0005089: Rho guanyl-nucleotide exchange factor activity3.36E-03
18GO:0008327: methyl-CpG binding3.36E-03
19GO:0004722: protein serine/threonine phosphatase activity3.49E-03
20GO:0010329: auxin efflux transmembrane transporter activity4.02E-03
21GO:0042973: glucan endo-1,3-beta-D-glucosidase activity4.37E-03
22GO:0008017: microtubule binding8.17E-03
23GO:0004402: histone acetyltransferase activity8.35E-03
24GO:0008080: N-acetyltransferase activity8.80E-03
25GO:0001085: RNA polymerase II transcription factor binding8.80E-03
26GO:0016853: isomerase activity9.26E-03
27GO:0019901: protein kinase binding9.73E-03
28GO:0030246: carbohydrate binding1.22E-02
29GO:0016788: hydrolase activity, acting on ester bonds1.23E-02
30GO:0008233: peptidase activity1.48E-02
31GO:0004806: triglyceride lipase activity1.48E-02
32GO:0030247: polysaccharide binding1.48E-02
33GO:0004693: cyclin-dependent protein serine/threonine kinase activity1.71E-02
34GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding1.77E-02
35GO:0004871: signal transducer activity1.89E-02
36GO:0003993: acid phosphatase activity1.95E-02
37GO:0042393: histone binding2.07E-02
38GO:0004185: serine-type carboxypeptidase activity2.26E-02
39GO:0043621: protein self-association2.39E-02
40GO:0035091: phosphatidylinositol binding2.39E-02
41GO:0003777: microtubule motor activity3.01E-02
42GO:0004672: protein kinase activity3.31E-02
43GO:0080043: quercetin 3-O-glucosyltransferase activity3.37E-02
44GO:0080044: quercetin 7-O-glucosyltransferase activity3.37E-02
45GO:0022857: transmembrane transporter activity3.44E-02
46GO:0016758: transferase activity, transferring hexosyl groups4.14E-02
47GO:0019843: rRNA binding4.22E-02
48GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding4.62E-02
49GO:0015144: carbohydrate transmembrane transporter activity4.79E-02
RankGO TermAdjusted P value
1GO:0042597: periplasmic space0.00E+00
2GO:0010370: perinucleolar chromocenter1.02E-04
3GO:0009897: external side of plasma membrane3.99E-04
4GO:0072686: mitotic spindle9.62E-04
5GO:0005945: 6-phosphofructokinase complex9.62E-04
6GO:0010005: cortical microtubule, transverse to long axis1.40E-03
7GO:0005819: spindle2.02E-03
8GO:0005811: lipid particle2.17E-03
9GO:0005720: nuclear heterochromatin2.45E-03
10GO:0055028: cortical microtubule3.05E-03
11GO:0016324: apical plasma membrane3.05E-03
12GO:0009574: preprophase band4.02E-03
13GO:0005938: cell cortex4.02E-03
14GO:0045271: respiratory chain complex I5.85E-03
15GO:0031965: nuclear membrane9.73E-03
16GO:0009507: chloroplast1.01E-02
17GO:0046658: anchored component of plasma membrane1.03E-02
18GO:0005667: transcription factor complex1.43E-02
19GO:0005874: microtubule1.45E-02
20GO:0031225: anchored component of membrane1.47E-02
21GO:0005802: trans-Golgi network1.52E-02
22GO:0009707: chloroplast outer membrane1.60E-02
23GO:0005768: endosome1.79E-02
24GO:0005856: cytoskeleton2.46E-02
25GO:0031966: mitochondrial membrane2.66E-02
26GO:0009505: plant-type cell wall2.72E-02
27GO:0005635: nuclear envelope2.94E-02
28GO:0005747: mitochondrial respiratory chain complex I3.22E-02
29GO:0005789: endoplasmic reticulum membrane3.48E-02
30GO:0005623: cell4.30E-02
31GO:0009524: phragmoplast4.38E-02
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Gene type



Gene DE type