Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G05740

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1901918: negative regulation of exoribonuclease activity0.00E+00
2GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
3GO:0015742: alpha-ketoglutarate transport0.00E+00
4GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
5GO:0006642: triglyceride mobilization0.00E+00
6GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
7GO:0042407: cristae formation0.00E+00
8GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
9GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
10GO:0015805: S-adenosyl-L-methionine transport0.00E+00
11GO:0015717: triose phosphate transport0.00E+00
12GO:0018023: peptidyl-lysine trimethylation0.00E+00
13GO:0002184: cytoplasmic translational termination0.00E+00
14GO:0006849: plasma membrane pyruvate transport0.00E+00
15GO:0015995: chlorophyll biosynthetic process2.31E-07
16GO:0009658: chloroplast organization1.71E-06
17GO:0032544: plastid translation1.38E-05
18GO:0010206: photosystem II repair1.91E-05
19GO:0019252: starch biosynthetic process3.03E-05
20GO:0006412: translation3.51E-05
21GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.75E-05
22GO:0009735: response to cytokinin7.34E-05
23GO:0042254: ribosome biogenesis1.45E-04
24GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1.52E-04
25GO:0061077: chaperone-mediated protein folding1.72E-04
26GO:0042026: protein refolding2.07E-04
27GO:1901259: chloroplast rRNA processing2.07E-04
28GO:0006633: fatty acid biosynthetic process2.80E-04
29GO:0000476: maturation of 4.5S rRNA3.24E-04
30GO:0000967: rRNA 5'-end processing3.24E-04
31GO:0005980: glycogen catabolic process3.24E-04
32GO:0030198: extracellular matrix organization3.24E-04
33GO:0007093: mitotic cell cycle checkpoint3.24E-04
34GO:0046166: glyceraldehyde-3-phosphate biosynthetic process3.24E-04
35GO:0042371: vitamin K biosynthetic process3.24E-04
36GO:0043686: co-translational protein modification3.24E-04
37GO:0043007: maintenance of rDNA3.24E-04
38GO:0010028: xanthophyll cycle3.24E-04
39GO:0034337: RNA folding3.24E-04
40GO:0005991: trehalose metabolic process3.24E-04
41GO:0000023: maltose metabolic process3.24E-04
42GO:0005978: glycogen biosynthetic process3.40E-04
43GO:0006783: heme biosynthetic process5.01E-04
44GO:0006782: protoporphyrinogen IX biosynthetic process6.91E-04
45GO:0009629: response to gravity7.07E-04
46GO:0019388: galactose catabolic process7.07E-04
47GO:0006423: cysteinyl-tRNA aminoacylation7.07E-04
48GO:0007154: cell communication7.07E-04
49GO:0018026: peptidyl-lysine monomethylation7.07E-04
50GO:0051304: chromosome separation7.07E-04
51GO:0016122: xanthophyll metabolic process7.07E-04
52GO:0010270: photosystem II oxygen evolving complex assembly7.07E-04
53GO:0034470: ncRNA processing7.07E-04
54GO:0009773: photosynthetic electron transport in photosystem I7.96E-04
55GO:0005983: starch catabolic process9.08E-04
56GO:0009817: defense response to fungus, incompatible interaction1.01E-03
57GO:0009405: pathogenesis1.15E-03
58GO:0019563: glycerol catabolic process1.15E-03
59GO:0035436: triose phosphate transmembrane transport1.15E-03
60GO:0006696: ergosterol biosynthetic process1.15E-03
61GO:0032504: multicellular organism reproduction1.15E-03
62GO:0010207: photosystem II assembly1.16E-03
63GO:0019253: reductive pentose-phosphate cycle1.16E-03
64GO:0009790: embryo development1.34E-03
65GO:0015979: photosynthesis1.35E-03
66GO:0010731: protein glutathionylation1.65E-03
67GO:0046739: transport of virus in multicellular host1.65E-03
68GO:0009590: detection of gravity1.65E-03
69GO:0043572: plastid fission1.65E-03
70GO:0045338: farnesyl diphosphate metabolic process1.65E-03
71GO:0006020: inositol metabolic process1.65E-03
72GO:0071484: cellular response to light intensity1.65E-03
73GO:0051085: chaperone mediated protein folding requiring cofactor1.65E-03
74GO:0015729: oxaloacetate transport1.65E-03
75GO:0010601: positive regulation of auxin biosynthetic process1.65E-03
76GO:0006418: tRNA aminoacylation for protein translation1.76E-03
77GO:0007005: mitochondrion organization2.11E-03
78GO:0015994: chlorophyll metabolic process2.21E-03
79GO:0022622: root system development2.21E-03
80GO:0015713: phosphoglycerate transport2.21E-03
81GO:0006021: inositol biosynthetic process2.21E-03
82GO:0019676: ammonia assimilation cycle2.21E-03
83GO:0015743: malate transport2.21E-03
84GO:0019464: glycine decarboxylation via glycine cleavage system2.21E-03
85GO:0006457: protein folding2.70E-03
86GO:0071423: malate transmembrane transport2.82E-03
87GO:0006564: L-serine biosynthetic process2.82E-03
88GO:0010236: plastoquinone biosynthetic process2.82E-03
89GO:0031365: N-terminal protein amino acid modification2.82E-03
90GO:0006096: glycolytic process3.37E-03
91GO:0006814: sodium ion transport3.39E-03
92GO:1902456: regulation of stomatal opening3.49E-03
93GO:0006828: manganese ion transport3.49E-03
94GO:0010190: cytochrome b6f complex assembly3.49E-03
95GO:0006086: acetyl-CoA biosynthetic process from pyruvate3.49E-03
96GO:0046855: inositol phosphate dephosphorylation3.49E-03
97GO:0009643: photosynthetic acclimation3.49E-03
98GO:0006014: D-ribose metabolic process3.49E-03
99GO:0010304: PSII associated light-harvesting complex II catabolic process3.49E-03
100GO:0006751: glutathione catabolic process3.49E-03
101GO:0000470: maturation of LSU-rRNA3.49E-03
102GO:0042372: phylloquinone biosynthetic process4.20E-03
103GO:0006458: 'de novo' protein folding4.20E-03
104GO:0009955: adaxial/abaxial pattern specification4.20E-03
105GO:0048437: floral organ development4.95E-03
106GO:0032880: regulation of protein localization4.95E-03
107GO:0009772: photosynthetic electron transport in photosystem II4.95E-03
108GO:0010027: thylakoid membrane organization5.63E-03
109GO:0006353: DNA-templated transcription, termination5.76E-03
110GO:0070413: trehalose metabolism in response to stress5.76E-03
111GO:0048564: photosystem I assembly5.76E-03
112GO:0009607: response to biotic stimulus5.96E-03
113GO:0010497: plasmodesmata-mediated intercellular transport6.60E-03
114GO:0009657: plastid organization6.60E-03
115GO:0009813: flavonoid biosynthetic process7.73E-03
116GO:0071577: zinc II ion transmembrane transport8.41E-03
117GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process8.41E-03
118GO:0010205: photoinhibition8.41E-03
119GO:0043067: regulation of programmed cell death8.41E-03
120GO:0045036: protein targeting to chloroplast9.37E-03
121GO:0009641: shade avoidance9.37E-03
122GO:0006816: calcium ion transport1.04E-02
123GO:0006415: translational termination1.04E-02
124GO:0018119: peptidyl-cysteine S-nitrosylation1.04E-02
125GO:0006631: fatty acid metabolic process1.11E-02
126GO:0016024: CDP-diacylglycerol biosynthetic process1.14E-02
127GO:0006790: sulfur compound metabolic process1.14E-02
128GO:0009409: response to cold1.17E-02
129GO:2000012: regulation of auxin polar transport1.25E-02
130GO:0010102: lateral root morphogenesis1.25E-02
131GO:0006006: glucose metabolic process1.25E-02
132GO:0006094: gluconeogenesis1.25E-02
133GO:0010143: cutin biosynthetic process1.36E-02
134GO:0010020: chloroplast fission1.36E-02
135GO:0010223: secondary shoot formation1.36E-02
136GO:0009266: response to temperature stimulus1.36E-02
137GO:0046854: phosphatidylinositol phosphorylation1.48E-02
138GO:0006364: rRNA processing1.63E-02
139GO:0000027: ribosomal large subunit assembly1.72E-02
140GO:0051017: actin filament bundle assembly1.72E-02
141GO:0005992: trehalose biosynthetic process1.72E-02
142GO:0009768: photosynthesis, light harvesting in photosystem I1.84E-02
143GO:0016114: terpenoid biosynthetic process1.97E-02
144GO:0016226: iron-sulfur cluster assembly2.10E-02
145GO:0006730: one-carbon metabolic process2.10E-02
146GO:0006012: galactose metabolic process2.23E-02
147GO:0006508: proteolysis2.28E-02
148GO:0009624: response to nematode2.32E-02
149GO:0006396: RNA processing2.39E-02
150GO:0008284: positive regulation of cell proliferation2.51E-02
151GO:0016117: carotenoid biosynthetic process2.51E-02
152GO:0080022: primary root development2.65E-02
153GO:0009958: positive gravitropism2.80E-02
154GO:0010197: polar nucleus fusion2.80E-02
155GO:0010182: sugar mediated signaling pathway2.80E-02
156GO:0009556: microsporogenesis3.10E-02
157GO:0006629: lipid metabolic process3.20E-02
158GO:0030163: protein catabolic process3.57E-02
159GO:0008152: metabolic process3.61E-02
160GO:0005975: carbohydrate metabolic process3.96E-02
161GO:0016126: sterol biosynthetic process4.23E-02
162GO:0009627: systemic acquired resistance4.57E-02
163GO:0055114: oxidation-reduction process4.98E-02
RankGO TermAdjusted P value
1GO:0005363: maltose transmembrane transporter activity0.00E+00
2GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
3GO:0090711: FMN hydrolase activity0.00E+00
4GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
5GO:0010303: limit dextrinase activity0.00E+00
6GO:0046422: violaxanthin de-epoxidase activity0.00E+00
7GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
8GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
9GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
10GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
11GO:0051060: pullulanase activity0.00E+00
12GO:0004822: isoleucine-tRNA ligase activity0.00E+00
13GO:0004853: uroporphyrinogen decarboxylase activity0.00E+00
14GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity0.00E+00
15GO:0046408: chlorophyll synthetase activity0.00E+00
16GO:0015139: alpha-ketoglutarate transmembrane transporter activity0.00E+00
17GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
18GO:0005201: extracellular matrix structural constituent0.00E+00
19GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
20GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
21GO:0019843: rRNA binding1.88E-10
22GO:0003735: structural constituent of ribosome5.22E-06
23GO:0045430: chalcone isomerase activity6.70E-05
24GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor6.70E-05
25GO:0005528: FK506 binding1.30E-04
26GO:0004856: xylulokinase activity3.24E-04
27GO:0004645: phosphorylase activity3.24E-04
28GO:0042586: peptide deformylase activity3.24E-04
29GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.24E-04
30GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity3.24E-04
31GO:0004807: triose-phosphate isomerase activity3.24E-04
32GO:0008184: glycogen phosphorylase activity3.24E-04
33GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.51E-04
34GO:0008934: inositol monophosphate 1-phosphatase activity7.07E-04
35GO:0052833: inositol monophosphate 4-phosphatase activity7.07E-04
36GO:0016630: protochlorophyllide reductase activity7.07E-04
37GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity7.07E-04
38GO:0004614: phosphoglucomutase activity7.07E-04
39GO:0015367: oxoglutarate:malate antiporter activity7.07E-04
40GO:0004310: farnesyl-diphosphate farnesyltransferase activity7.07E-04
41GO:0008967: phosphoglycolate phosphatase activity7.07E-04
42GO:0004618: phosphoglycerate kinase activity7.07E-04
43GO:0003839: gamma-glutamylcyclotransferase activity7.07E-04
44GO:0004617: phosphoglycerate dehydrogenase activity7.07E-04
45GO:0052832: inositol monophosphate 3-phosphatase activity7.07E-04
46GO:0004817: cysteine-tRNA ligase activity7.07E-04
47GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity7.07E-04
48GO:0044183: protein binding involved in protein folding7.96E-04
49GO:0047372: acylglycerol lipase activity7.96E-04
50GO:0005504: fatty acid binding1.15E-03
51GO:0002161: aminoacyl-tRNA editing activity1.15E-03
52GO:0090729: toxin activity1.15E-03
53GO:0050833: pyruvate transmembrane transporter activity1.15E-03
54GO:0045174: glutathione dehydrogenase (ascorbate) activity1.15E-03
55GO:0071917: triose-phosphate transmembrane transporter activity1.15E-03
56GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.15E-03
57GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.15E-03
58GO:0019201: nucleotide kinase activity1.65E-03
59GO:0015131: oxaloacetate transmembrane transporter activity1.65E-03
60GO:0016149: translation release factor activity, codon specific1.65E-03
61GO:0016851: magnesium chelatase activity1.65E-03
62GO:0043023: ribosomal large subunit binding1.65E-03
63GO:0008097: 5S rRNA binding1.65E-03
64GO:0008508: bile acid:sodium symporter activity1.65E-03
65GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity1.65E-03
66GO:0004375: glycine dehydrogenase (decarboxylating) activity1.65E-03
67GO:0004176: ATP-dependent peptidase activity1.93E-03
68GO:0008878: glucose-1-phosphate adenylyltransferase activity2.21E-03
69GO:0015120: phosphoglycerate transmembrane transporter activity2.21E-03
70GO:0004659: prenyltransferase activity2.21E-03
71GO:0016279: protein-lysine N-methyltransferase activity2.21E-03
72GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity2.21E-03
73GO:0004812: aminoacyl-tRNA ligase activity2.71E-03
74GO:0003959: NADPH dehydrogenase activity2.82E-03
75GO:0016773: phosphotransferase activity, alcohol group as acceptor2.82E-03
76GO:0004629: phospholipase C activity3.49E-03
77GO:0004556: alpha-amylase activity3.49E-03
78GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.49E-03
79GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.49E-03
80GO:0048038: quinone binding3.89E-03
81GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.20E-03
82GO:0004017: adenylate kinase activity4.20E-03
83GO:0004747: ribokinase activity4.20E-03
84GO:0004435: phosphatidylinositol phospholipase C activity4.20E-03
85GO:0004723: calcium-dependent protein serine/threonine phosphatase activity4.20E-03
86GO:0051920: peroxiredoxin activity4.20E-03
87GO:0051082: unfolded protein binding4.28E-03
88GO:0016791: phosphatase activity4.72E-03
89GO:0015140: malate transmembrane transporter activity4.95E-03
90GO:0008237: metallopeptidase activity5.01E-03
91GO:0004034: aldose 1-epimerase activity5.76E-03
92GO:0004033: aldo-keto reductase (NADP) activity5.76E-03
93GO:0004525: ribonuclease III activity5.76E-03
94GO:0008865: fructokinase activity5.76E-03
95GO:0016209: antioxidant activity5.76E-03
96GO:0003747: translation release factor activity7.48E-03
97GO:0004222: metalloendopeptidase activity8.11E-03
98GO:0005384: manganese ion transmembrane transporter activity8.41E-03
99GO:0047617: acyl-CoA hydrolase activity8.41E-03
100GO:0008559: xenobiotic-transporting ATPase activity1.04E-02
101GO:0000049: tRNA binding1.14E-02
102GO:0003725: double-stranded RNA binding1.25E-02
103GO:0004089: carbonate dehydratase activity1.25E-02
104GO:0015095: magnesium ion transmembrane transporter activity1.25E-02
105GO:0031072: heat shock protein binding1.25E-02
106GO:0043621: protein self-association1.31E-02
107GO:0008083: growth factor activity1.36E-02
108GO:0008266: poly(U) RNA binding1.36E-02
109GO:0031409: pigment binding1.60E-02
110GO:0051536: iron-sulfur cluster binding1.72E-02
111GO:0005385: zinc ion transmembrane transporter activity1.72E-02
112GO:0008324: cation transmembrane transporter activity1.84E-02
113GO:0003727: single-stranded RNA binding2.37E-02
114GO:0005102: receptor binding2.51E-02
115GO:0001085: RNA polymerase II transcription factor binding2.80E-02
116GO:0016853: isomerase activity2.95E-02
117GO:0016491: oxidoreductase activity3.14E-02
118GO:0004252: serine-type endopeptidase activity3.23E-02
119GO:0000156: phosphorelay response regulator activity3.57E-02
120GO:0051015: actin filament binding3.57E-02
121GO:0015297: antiporter activity3.83E-02
122GO:0016597: amino acid binding4.06E-02
123GO:0005525: GTP binding4.17E-02
124GO:0016168: chlorophyll binding4.40E-02
125GO:0008236: serine-type peptidase activity4.92E-02
RankGO TermAdjusted P value
1GO:0005835: fatty acid synthase complex0.00E+00
2GO:0009571: proplastid stroma0.00E+00
3GO:0010170: glucose-1-phosphate adenylyltransferase complex0.00E+00
4GO:0009507: chloroplast6.51E-60
5GO:0009570: chloroplast stroma1.34E-45
6GO:0009941: chloroplast envelope8.47E-34
7GO:0009535: chloroplast thylakoid membrane1.85E-22
8GO:0009534: chloroplast thylakoid3.36E-22
9GO:0009579: thylakoid6.47E-21
10GO:0009543: chloroplast thylakoid lumen1.88E-10
11GO:0031977: thylakoid lumen1.64E-09
12GO:0031969: chloroplast membrane3.25E-07
13GO:0005840: ribosome1.22E-06
14GO:0009706: chloroplast inner membrane1.06E-05
15GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.91E-05
16GO:0010319: stromule5.72E-05
17GO:0009536: plastid8.10E-05
18GO:0009547: plastid ribosome3.24E-04
19GO:0048046: apoplast8.00E-04
20GO:0010007: magnesium chelatase complex1.15E-03
21GO:0030095: chloroplast photosystem II1.16E-03
22GO:0005960: glycine cleavage complex1.65E-03
23GO:0009840: chloroplastic endopeptidase Clp complex4.20E-03
24GO:0022626: cytosolic ribosome5.39E-03
25GO:0009707: chloroplast outer membrane7.35E-03
26GO:0005763: mitochondrial small ribosomal subunit7.48E-03
27GO:0016020: membrane1.10E-02
28GO:0000311: plastid large ribosomal subunit1.14E-02
29GO:0032040: small-subunit processome1.14E-02
30GO:0030076: light-harvesting complex1.48E-02
31GO:0042651: thylakoid membrane1.84E-02
32GO:0009654: photosystem II oxygen evolving complex1.84E-02
33GO:0015935: small ribosomal subunit1.97E-02
34GO:0009532: plastid stroma1.97E-02
35GO:0022625: cytosolic large ribosomal subunit2.10E-02
36GO:0015629: actin cytoskeleton2.23E-02
37GO:0019898: extrinsic component of membrane3.10E-02
38GO:0005615: extracellular space4.48E-02
39GO:0005667: transcription factor complex4.57E-02
<
Gene type



Gene DE type