co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G05580

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
2	GO:0033494: ferulate metabolic process	0.00E+00
3	GO:0005996: monosaccharide metabolic process	0.00E+00
4	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
5	GO:0035674: tricarboxylic acid transmembrane transport	0.00E+00
6	GO:0009773: photosynthetic electron transport in photosystem I	1.30E-13
7	GO:0015995: chlorophyll biosynthetic process	1.97E-11
8	GO:0015979: photosynthesis	3.36E-09
9	GO:0006094: gluconeogenesis	6.61E-09
10	GO:0090391: granum assembly	1.40E-08
11	GO:0010207: photosystem II assembly	7.33E-07
12	GO:0030388: fructose 1,6-bisphosphate metabolic process	2.37E-06
13	GO:0010206: photosystem II repair	7.84E-06
14	GO:0006000: fructose metabolic process	8.63E-06
15	GO:0006810: transport	2.09E-05
16	GO:0005983: starch catabolic process	2.29E-05
17	GO:0055114: oxidation-reduction process	7.08E-05
18	GO:0042549: photosystem II stabilization	8.46E-05
19	GO:0032259: methylation	1.47E-04
20	GO:0010196: nonphotochemical quenching	1.54E-04
21	GO:0009642: response to light intensity	1.97E-04
22	GO:0000025: maltose catabolic process	2.25E-04
23	GO:0005980: glycogen catabolic process	2.25E-04
24	GO:0071277: cellular response to calcium ion	2.25E-04
25	GO:0015671: oxygen transport	2.25E-04
26	GO:0080093: regulation of photorespiration	2.25E-04
27	GO:0031998: regulation of fatty acid beta-oxidation	2.25E-04
28	GO:0006835: dicarboxylic acid transport	2.25E-04
29	GO:0000023: maltose metabolic process	2.25E-04
30	GO:0006002: fructose 6-phosphate metabolic process	2.44E-04
31	GO:0006096: glycolytic process	2.46E-04
32	GO:0006098: pentose-phosphate shunt	2.95E-04
33	GO:0043085: positive regulation of catalytic activity	4.76E-04
34	GO:0080029: cellular response to boron-containing substance levels	5.00E-04
35	GO:0006898: receptor-mediated endocytosis	5.00E-04
36	GO:0005976: polysaccharide metabolic process	5.00E-04
37	GO:0010353: response to trehalose	5.00E-04
38	GO:0005986: sucrose biosynthetic process	6.19E-04
39	GO:0010143: cutin biosynthetic process	6.96E-04
40	GO:0019253: reductive pentose-phosphate cycle	6.96E-04
41	GO:0006518: peptide metabolic process	8.13E-04
42	GO:0006081: cellular aldehyde metabolic process	8.13E-04
43	GO:0006636: unsaturated fatty acid biosynthetic process	8.64E-04
44	GO:0010114: response to red light	9.59E-04
45	GO:0061077: chaperone-mediated protein folding	1.15E-03
46	GO:0046713: borate transport	1.16E-03
47	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.16E-03
48	GO:1902358: sulfate transmembrane transport	1.16E-03
49	GO:0071484: cellular response to light intensity	1.16E-03
50	GO:0006109: regulation of carbohydrate metabolic process	1.54E-03
51	GO:0045727: positive regulation of translation	1.54E-03
52	GO:0015994: chlorophyll metabolic process	1.54E-03
53	GO:0071483: cellular response to blue light	1.54E-03
54	GO:0010021: amylopectin biosynthetic process	1.54E-03
55	GO:0006662: glycerol ether metabolic process	1.87E-03
56	GO:0009735: response to cytokinin	1.94E-03
57	GO:0006656: phosphatidylcholine biosynthetic process	1.97E-03
58	GO:0009904: chloroplast accumulation movement	1.97E-03
59	GO:0006097: glyoxylate cycle	1.97E-03
60	GO:0080167: response to karrikin	2.07E-03
61	GO:0019252: starch biosynthetic process	2.15E-03
62	GO:1902456: regulation of stomatal opening	2.43E-03
63	GO:0010304: PSII associated light-harvesting complex II catabolic process	2.43E-03
64	GO:0009903: chloroplast avoidance movement	2.91E-03
65	GO:0010189: vitamin E biosynthetic process	2.91E-03
66	GO:0009854: oxidative photosynthetic carbon pathway	2.91E-03
67	GO:0010027: thylakoid membrane organization	3.31E-03
68	GO:0008272: sulfate transport	3.43E-03
69	GO:1900057: positive regulation of leaf senescence	3.43E-03
70	GO:0009610: response to symbiotic fungus	3.43E-03
71	GO:0009772: photosynthetic electron transport in photosystem II	3.43E-03
72	GO:0019827: stem cell population maintenance	3.98E-03
73	GO:0005978: glycogen biosynthetic process	3.98E-03
74	GO:0030091: protein repair	3.98E-03
75	GO:0009704: de-etiolation	3.98E-03
76	GO:0016311: dephosphorylation	4.10E-03
77	GO:0015996: chlorophyll catabolic process	4.56E-03
78	GO:0009657: plastid organization	4.56E-03
79	GO:0032544: plastid translation	4.56E-03
80	GO:0009631: cold acclimation	4.98E-03
81	GO:0019432: triglyceride biosynthetic process	5.16E-03
82	GO:0090333: regulation of stomatal closure	5.16E-03
83	GO:0006783: heme biosynthetic process	5.16E-03
84	GO:0006754: ATP biosynthetic process	5.16E-03
85	GO:0034599: cellular response to oxidative stress	5.71E-03
86	GO:0010205: photoinhibition	5.79E-03
87	GO:0006779: porphyrin-containing compound biosynthetic process	5.79E-03
88	GO:0005982: starch metabolic process	5.79E-03
89	GO:0006782: protoporphyrinogen IX biosynthetic process	6.45E-03
90	GO:0009641: shade avoidance	6.45E-03
91	GO:0006631: fatty acid metabolic process	6.49E-03
92	GO:0000272: polysaccharide catabolic process	7.13E-03
93	GO:0009750: response to fructose	7.13E-03
94	GO:0018119: peptidyl-cysteine S-nitrosylation	7.13E-03
95	GO:0006108: malate metabolic process	8.57E-03
96	GO:0006006: glucose metabolic process	8.57E-03
97	GO:0018107: peptidyl-threonine phosphorylation	8.57E-03
98	GO:0009725: response to hormone	8.57E-03
99	GO:0007015: actin filament organization	9.33E-03
100	GO:0010223: secondary shoot formation	9.33E-03
101	GO:0006364: rRNA processing	9.50E-03
102	GO:0005985: sucrose metabolic process	1.01E-02
103	GO:0010025: wax biosynthetic process	1.09E-02
104	GO:0007017: microtubule-based process	1.26E-02
105	GO:0009768: photosynthesis, light harvesting in photosystem I	1.26E-02
106	GO:0016998: cell wall macromolecule catabolic process	1.34E-02
107	GO:0006869: lipid transport	1.41E-02
108	GO:0030433: ubiquitin-dependent ERAD pathway	1.43E-02
109	GO:0019748: secondary metabolic process	1.43E-02
110	GO:0070417: cellular response to cold	1.71E-02
111	GO:0042631: cellular response to water deprivation	1.81E-02
112	GO:0000413: protein peptidyl-prolyl isomerization	1.81E-02
113	GO:0006606: protein import into nucleus	1.81E-02
114	GO:0009741: response to brassinosteroid	1.91E-02
115	GO:0015986: ATP synthesis coupled proton transport	2.01E-02
116	GO:0006633: fatty acid biosynthetic process	2.14E-02
117	GO:0009630: gravitropism	2.32E-02
118	GO:0006979: response to oxidative stress	2.61E-02
119	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.00E-02
120	GO:0042128: nitrate assimilation	3.12E-02
121	GO:0010411: xyloglucan metabolic process	3.24E-02
122	GO:0018298: protein-chromophore linkage	3.48E-02
123	GO:0010311: lateral root formation	3.61E-02
124	GO:0000160: phosphorelay signal transduction system	3.61E-02
125	GO:0009658: chloroplast organization	3.63E-02
126	GO:0010218: response to far red light	3.73E-02
127	GO:0007568: aging	3.86E-02
128	GO:0045893: positive regulation of transcription, DNA-templated	3.97E-02
129	GO:0009409: response to cold	4.01E-02
130	GO:0009853: photorespiration	4.12E-02
131	GO:0009637: response to blue light	4.12E-02
132	GO:0006099: tricarboxylic acid cycle	4.25E-02
133	GO:0006839: mitochondrial transport	4.52E-02
134	GO:0005975: carbohydrate metabolic process	4.72E-02
135	GO:0046686: response to cadmium ion	4.90E-02
136	GO:0009744: response to sucrose	4.93E-02
137	GO:0051707: response to other organism	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
2	GO:0033840: NDP-glucose-starch glucosyltransferase activity	0.00E+00
3	GO:0052667: phosphomethylethanolamine N-methyltransferase activity	0.00E+00
4	GO:0008887: glycerate kinase activity	0.00E+00
5	GO:0045550: geranylgeranyl reductase activity	0.00E+00
6	GO:0046408: chlorophyll synthetase activity	0.00E+00
7	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
8	GO:0015142: tricarboxylic acid transmembrane transporter activity	0.00E+00
9	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
10	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
11	GO:0030794: (S)-coclaurine-N-methyltransferase activity	0.00E+00
12	GO:0004332: fructose-bisphosphate aldolase activity	8.86E-07
13	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.37E-06
14	GO:0010297: heteropolysaccharide binding	2.37E-06
15	GO:0016851: magnesium chelatase activity	1.97E-05
16	GO:0050521: alpha-glucan, water dikinase activity	2.25E-04
17	GO:0008184: glycogen phosphorylase activity	2.25E-04
18	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	2.25E-04
19	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	2.25E-04
20	GO:0045485: omega-6 fatty acid desaturase activity	2.25E-04
21	GO:0004134: 4-alpha-glucanotransferase activity	2.25E-04
22	GO:0031957: very long-chain fatty acid-CoA ligase activity	2.25E-04
23	GO:0004645: phosphorylase activity	2.25E-04
24	GO:0034256: chlorophyll(ide) b reductase activity	2.25E-04
25	GO:0015168: glycerol transmembrane transporter activity	2.25E-04
26	GO:0005344: oxygen transporter activity	2.25E-04
27	GO:0035671: enone reductase activity	2.25E-04
28	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	2.25E-04
29	GO:0008168: methyltransferase activity	2.59E-04
30	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	3.51E-04
31	GO:0008047: enzyme activator activity	4.12E-04
32	GO:0018708: thiol S-methyltransferase activity	5.00E-04
33	GO:0003844: 1,4-alpha-glucan branching enzyme activity	5.00E-04
34	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	5.00E-04
35	GO:0016630: protochlorophyllide reductase activity	5.00E-04
36	GO:0000234: phosphoethanolamine N-methyltransferase activity	5.00E-04
37	GO:0008883: glutamyl-tRNA reductase activity	5.00E-04
38	GO:0047746: chlorophyllase activity	5.00E-04
39	GO:0004565: beta-galactosidase activity	6.19E-04
40	GO:0010277: chlorophyllide a oxygenase [overall] activity	8.13E-04
41	GO:0043169: cation binding	8.13E-04
42	GO:0005310: dicarboxylic acid transmembrane transporter activity	8.13E-04
43	GO:0004373: glycogen (starch) synthase activity	8.13E-04
44	GO:0050734: hydroxycinnamoyltransferase activity	8.13E-04
45	GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity	8.13E-04
46	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	8.13E-04
47	GO:0005528: FK506 binding	9.55E-04
48	GO:0051537: 2 iron, 2 sulfur cluster binding	1.06E-03
49	GO:0016491: oxidoreductase activity	1.15E-03
50	GO:0019201: nucleotide kinase activity	1.16E-03
51	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.16E-03
52	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.16E-03
53	GO:0046715: borate transmembrane transporter activity	1.16E-03
54	GO:0017077: oxidative phosphorylation uncoupler activity	1.16E-03
55	GO:0009011: starch synthase activity	1.54E-03
56	GO:0015204: urea transmembrane transporter activity	1.54E-03
57	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.54E-03
58	GO:0047134: protein-disulfide reductase activity	1.60E-03
59	GO:0004791: thioredoxin-disulfide reductase activity	2.00E-03
60	GO:0048038: quinone binding	2.30E-03
61	GO:0004029: aldehyde dehydrogenase (NAD) activity	2.43E-03
62	GO:0016615: malate dehydrogenase activity	2.43E-03
63	GO:0008200: ion channel inhibitor activity	2.43E-03
64	GO:2001070: starch binding	2.43E-03
65	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.61E-03
66	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.91E-03
67	GO:0102391: decanoate--CoA ligase activity	2.91E-03
68	GO:0030060: L-malate dehydrogenase activity	2.91E-03
69	GO:0004017: adenylate kinase activity	2.91E-03
70	GO:0004602: glutathione peroxidase activity	2.91E-03
71	GO:0004467: long-chain fatty acid-CoA ligase activity	3.43E-03
72	GO:0008271: secondary active sulfate transmembrane transporter activity	4.56E-03
73	GO:0050661: NADP binding	6.22E-03
74	GO:0030234: enzyme regulator activity	6.45E-03
75	GO:0044183: protein binding involved in protein folding	7.13E-03
76	GO:0047372: acylglycerol lipase activity	7.13E-03
77	GO:0015116: sulfate transmembrane transporter activity	7.84E-03
78	GO:0031072: heat shock protein binding	8.57E-03
79	GO:0031409: pigment binding	1.09E-02
80	GO:0004857: enzyme inhibitor activity	1.17E-02
81	GO:0015035: protein disulfide oxidoreductase activity	1.40E-02
82	GO:0003756: protein disulfide isomerase activity	1.62E-02
83	GO:0003727: single-stranded RNA binding	1.62E-02
84	GO:0008536: Ran GTPase binding	1.91E-02
85	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.91E-02
86	GO:0050662: coenzyme binding	2.01E-02
87	GO:0016853: isomerase activity	2.01E-02
88	GO:0004872: receptor activity	2.11E-02
89	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.22E-02
90	GO:0000156: phosphorelay response regulator activity	2.43E-02
91	GO:0008289: lipid binding	2.48E-02
92	GO:0005200: structural constituent of cytoskeleton	2.65E-02
93	GO:0015250: water channel activity	2.88E-02
94	GO:0042802: identical protein binding	2.99E-02
95	GO:0016168: chlorophyll binding	3.00E-02
96	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.24E-02
97	GO:0016788: hydrolase activity, acting on ester bonds	3.70E-02
98	GO:0004222: metalloendopeptidase activity	3.73E-02
99	GO:0003746: translation elongation factor activity	4.12E-02
100	GO:0003993: acid phosphatase activity	4.25E-02
101	GO:0004185: serine-type carboxypeptidase activity	4.93E-02
102	GO:0052689: carboxylic ester hydrolase activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0042579: microbody	0.00E+00
3	GO:0009534: chloroplast thylakoid	1.02E-40
4	GO:0009507: chloroplast	9.62E-38
5	GO:0009535: chloroplast thylakoid membrane	5.26E-34
6	GO:0009941: chloroplast envelope	3.33E-19
7	GO:0009579: thylakoid	4.87E-14
8	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.40E-12
9	GO:0009570: chloroplast stroma	1.07E-10
10	GO:0009543: chloroplast thylakoid lumen	1.02E-08
11	GO:0031977: thylakoid lumen	2.27E-07
12	GO:0010287: plastoglobule	3.74E-06
13	GO:0031969: chloroplast membrane	6.61E-06
14	GO:0010007: magnesium chelatase complex	8.63E-06
15	GO:0048046: apoplast	3.40E-05
16	GO:0010319: stromule	3.15E-04
17	GO:0009569: chloroplast starch grain	5.00E-04
18	GO:0031357: integral component of chloroplast inner membrane	5.00E-04
19	GO:0000427: plastid-encoded plastid RNA polymerase complex	5.00E-04
20	GO:0042651: thylakoid membrane	1.05E-03
21	GO:0009544: chloroplast ATP synthase complex	1.54E-03
22	GO:0009706: chloroplast inner membrane	2.17E-03
23	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.43E-03
24	GO:0009538: photosystem I reaction center	3.98E-03
25	GO:0031982: vesicle	3.98E-03
26	GO:0009501: amyloplast	3.98E-03
27	GO:0045298: tubulin complex	5.16E-03
28	GO:0008180: COP9 signalosome	5.16E-03
29	GO:0030095: chloroplast photosystem II	9.33E-03
30	GO:0030076: light-harvesting complex	1.01E-02
31	GO:0043234: protein complex	1.09E-02
32	GO:0009654: photosystem II oxygen evolving complex	1.26E-02
33	GO:0005623: cell	1.75E-02
34	GO:0009522: photosystem I	2.01E-02
35	GO:0009523: photosystem II	2.11E-02
36	GO:0019898: extrinsic component of membrane	2.11E-02
37	GO:0009707: chloroplast outer membrane	3.48E-02
38	GO:0019005: SCF ubiquitin ligase complex	3.48E-02