co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G05340

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006858: extracellular transport	0.00E+00
2	GO:0036258: multivesicular body assembly	0.00E+00
3	GO:2000117: negative regulation of cysteine-type endopeptidase activity	0.00E+00
4	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	3.28E-05
5	GO:0006102: isocitrate metabolic process	8.08E-05
6	GO:0010120: camalexin biosynthetic process	1.02E-04
7	GO:0006144: purine nucleobase metabolic process	1.25E-04
8	GO:0080120: CAAX-box protein maturation	1.25E-04
9	GO:0071586: CAAX-box protein processing	1.25E-04
10	GO:0019628: urate catabolic process	1.25E-04
11	GO:0009821: alkaloid biosynthetic process	1.25E-04
12	GO:0006511: ubiquitin-dependent protein catabolic process	1.85E-04
13	GO:0006099: tricarboxylic acid cycle	2.59E-04
14	GO:0006996: organelle organization	2.90E-04
15	GO:0046939: nucleotide phosphorylation	2.90E-04
16	GO:0010372: positive regulation of gibberellin biosynthetic process	2.90E-04
17	GO:0043132: NAD transport	2.90E-04
18	GO:0044375: regulation of peroxisome size	4.78E-04
19	GO:0090630: activation of GTPase activity	4.78E-04
20	GO:0010359: regulation of anion channel activity	4.78E-04
21	GO:0043617: cellular response to sucrose starvation	4.78E-04
22	GO:0030433: ubiquitin-dependent ERAD pathway	5.76E-04
23	GO:0070676: intralumenal vesicle formation	6.85E-04
24	GO:0001676: long-chain fatty acid metabolic process	6.85E-04
25	GO:0015858: nucleoside transport	6.85E-04
26	GO:0010363: regulation of plant-type hypersensitive response	9.08E-04
27	GO:0009646: response to absence of light	9.12E-04
28	GO:0009058: biosynthetic process	1.10E-03
29	GO:0006461: protein complex assembly	1.15E-03
30	GO:0018279: protein N-linked glycosylation via asparagine	1.15E-03
31	GO:0006564: L-serine biosynthetic process	1.15E-03
32	GO:0097428: protein maturation by iron-sulfur cluster transfer	1.15E-03
33	GO:0006561: proline biosynthetic process	1.41E-03
34	GO:0009615: response to virus	1.48E-03
35	GO:0010150: leaf senescence	1.54E-03
36	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	1.68E-03
37	GO:1900056: negative regulation of leaf senescence	1.98E-03
38	GO:0000338: protein deneddylation	1.98E-03
39	GO:0006499: N-terminal protein myristoylation	2.12E-03
40	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	2.29E-03
41	GO:0006402: mRNA catabolic process	2.29E-03
42	GO:0006972: hyperosmotic response	2.61E-03
43	GO:0015031: protein transport	2.80E-03
44	GO:0046685: response to arsenic-containing substance	2.95E-03
45	GO:0090332: stomatal closure	3.31E-03
46	GO:0043069: negative regulation of programmed cell death	3.68E-03
47	GO:0006032: chitin catabolic process	3.68E-03
48	GO:0055085: transmembrane transport	3.69E-03
49	GO:0009664: plant-type cell wall organization	3.91E-03
50	GO:0009682: induced systemic resistance	4.06E-03
51	GO:0010072: primary shoot apical meristem specification	4.06E-03
52	GO:0072593: reactive oxygen species metabolic process	4.06E-03
53	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	4.45E-03
54	GO:0006790: sulfur compound metabolic process	4.45E-03
55	GO:0006820: anion transport	4.45E-03
56	GO:0002213: defense response to insect	4.45E-03
57	GO:0009651: response to salt stress	4.77E-03
58	GO:0009718: anthocyanin-containing compound biosynthetic process	4.86E-03
59	GO:0006829: zinc II ion transport	4.86E-03
60	GO:0006807: nitrogen compound metabolic process	4.86E-03
61	GO:0006096: glycolytic process	4.95E-03
62	GO:0034605: cellular response to heat	5.28E-03
63	GO:0009620: response to fungus	5.44E-03
64	GO:0046854: phosphatidylinositol phosphorylation	5.71E-03
65	GO:0007031: peroxisome organization	5.71E-03
66	GO:0009753: response to jasmonic acid	6.29E-03
67	GO:0005992: trehalose biosynthetic process	6.61E-03
68	GO:0042742: defense response to bacterium	7.49E-03
69	GO:0042744: hydrogen peroxide catabolic process	8.49E-03
70	GO:0010227: floral organ abscission	8.56E-03
71	GO:0009561: megagametogenesis	9.07E-03
72	GO:0009306: protein secretion	9.07E-03
73	GO:0051028: mRNA transport	9.60E-03
74	GO:0010051: xylem and phloem pattern formation	1.01E-02
75	GO:0010118: stomatal movement	1.01E-02
76	GO:0055072: iron ion homeostasis	1.18E-02
77	GO:0009611: response to wounding	1.23E-02
78	GO:0009617: response to bacterium	1.23E-02
79	GO:0010193: response to ozone	1.24E-02
80	GO:0031047: gene silencing by RNA	1.30E-02
81	GO:1901657: glycosyl compound metabolic process	1.36E-02
82	GO:0030163: protein catabolic process	1.36E-02
83	GO:0010252: auxin homeostasis	1.42E-02
84	GO:0006914: autophagy	1.42E-02
85	GO:0009826: unidimensional cell growth	1.54E-02
86	GO:0016579: protein deubiquitination	1.54E-02
87	GO:0006950: response to stress	1.81E-02
88	GO:0009723: response to ethylene	1.85E-02
89	GO:0009813: flavonoid biosynthetic process	2.01E-02
90	GO:0010311: lateral root formation	2.01E-02
91	GO:0006811: ion transport	2.08E-02
92	GO:0010043: response to zinc ion	2.15E-02
93	GO:0007568: aging	2.15E-02
94	GO:0010119: regulation of stomatal movement	2.15E-02
95	GO:0009867: jasmonic acid mediated signaling pathway	2.30E-02
96	GO:0006839: mitochondrial transport	2.52E-02
97	GO:0030001: metal ion transport	2.52E-02
98	GO:0006897: endocytosis	2.60E-02
99	GO:0006631: fatty acid metabolic process	2.60E-02
100	GO:0009926: auxin polar transport	2.75E-02
101	GO:0009744: response to sucrose	2.75E-02
102	GO:0009640: photomorphogenesis	2.75E-02
103	GO:0009751: response to salicylic acid	2.89E-02
104	GO:0006397: mRNA processing	3.06E-02
105	GO:0006855: drug transmembrane transport	3.07E-02
106	GO:0031347: regulation of defense response	3.15E-02
107	GO:0042538: hyperosmotic salinity response	3.24E-02
108	GO:0055114: oxidation-reduction process	3.34E-02
109	GO:0009585: red, far-red light phototransduction	3.40E-02
110	GO:0051603: proteolysis involved in cellular protein catabolic process	3.49E-02
111	GO:0006952: defense response	3.53E-02
112	GO:0050832: defense response to fungus	3.79E-02
113	GO:0009624: response to nematode	4.37E-02
114	GO:0018105: peptidyl-serine phosphorylation	4.47E-02
115	GO:0009735: response to cytokinin	4.73E-02
116	GO:0005975: carbohydrate metabolic process	4.84E-02
117	GO:0046686: response to cadmium ion	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0035885: exochitinase activity	0.00E+00
2	GO:0008418: protein-N-terminal asparagine amidohydrolase activity	0.00E+00
3	GO:0047720: indoleacetaldoxime dehydratase activity	0.00E+00
4	GO:0008843: endochitinase activity	0.00E+00
5	GO:0004846: urate oxidase activity	0.00E+00
6	GO:0044610: FMN transmembrane transporter activity	0.00E+00
7	GO:0004449: isocitrate dehydrogenase (NAD+) activity	7.04E-06
8	GO:0036402: proteasome-activating ATPase activity	3.28E-05
9	GO:0010013: N-1-naphthylphthalamic acid binding	1.25E-04
10	GO:0019786: Atg8-specific protease activity	1.25E-04
11	GO:0048037: cofactor binding	1.25E-04
12	GO:0015230: FAD transmembrane transporter activity	1.25E-04
13	GO:0016682: oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	1.25E-04
14	GO:0030955: potassium ion binding	1.51E-04
15	GO:0016844: strictosidine synthase activity	1.51E-04
16	GO:0004743: pyruvate kinase activity	1.51E-04
17	GO:0004776: succinate-CoA ligase (GDP-forming) activity	2.90E-04
18	GO:0004566: beta-glucuronidase activity	2.90E-04
19	GO:0015228: coenzyme A transmembrane transporter activity	2.90E-04
20	GO:0004617: phosphoglycerate dehydrogenase activity	2.90E-04
21	GO:0051724: NAD transporter activity	2.90E-04
22	GO:0004775: succinate-CoA ligase (ADP-forming) activity	2.90E-04
23	GO:0019779: Atg8 activating enzyme activity	2.90E-04
24	GO:0008517: folic acid transporter activity	2.90E-04
25	GO:0017025: TBP-class protein binding	3.52E-04
26	GO:0052692: raffinose alpha-galactosidase activity	4.78E-04
27	GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity	4.78E-04
28	GO:0004557: alpha-galactosidase activity	4.78E-04
29	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	4.78E-04
30	GO:0004298: threonine-type endopeptidase activity	5.28E-04
31	GO:0019201: nucleotide kinase activity	6.85E-04
32	GO:0019776: Atg8 ligase activity	9.08E-04
33	GO:0010279: indole-3-acetic acid amido synthetase activity	9.08E-04
34	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	1.15E-03
35	GO:0080122: AMP transmembrane transporter activity	1.15E-03
36	GO:0031593: polyubiquitin binding	1.41E-03
37	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	1.41E-03
38	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	1.41E-03
39	GO:0015217: ADP transmembrane transporter activity	1.68E-03
40	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.68E-03
41	GO:0102391: decanoate--CoA ligase activity	1.68E-03
42	GO:0004017: adenylate kinase activity	1.68E-03
43	GO:0005347: ATP transmembrane transporter activity	1.68E-03
44	GO:0004656: procollagen-proline 4-dioxygenase activity	1.68E-03
45	GO:0004467: long-chain fatty acid-CoA ligase activity	1.98E-03
46	GO:0015288: porin activity	2.29E-03
47	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.43E-03
48	GO:0008308: voltage-gated anion channel activity	2.61E-03
49	GO:0000287: magnesium ion binding	2.61E-03
50	GO:0005198: structural molecule activity	3.50E-03
51	GO:0005524: ATP binding	3.56E-03
52	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	3.68E-03
53	GO:0051287: NAD binding	3.77E-03
54	GO:0004177: aminopeptidase activity	4.06E-03
55	GO:0008559: xenobiotic-transporting ATPase activity	4.06E-03
56	GO:0004022: alcohol dehydrogenase (NAD) activity	4.86E-03
57	GO:0004175: endopeptidase activity	5.28E-03
58	GO:0008061: chitin binding	5.71E-03
59	GO:0031418: L-ascorbic acid binding	6.61E-03
60	GO:0043130: ubiquitin binding	6.61E-03
61	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	7.56E-03
62	GO:0008565: protein transporter activity	8.93E-03
63	GO:0005199: structural constituent of cell wall	1.07E-02
64	GO:0046873: metal ion transmembrane transporter activity	1.07E-02
65	GO:0000166: nucleotide binding	1.19E-02
66	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.24E-02
67	GO:0004518: nuclease activity	1.30E-02
68	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.31E-02
69	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.48E-02
70	GO:0016597: amino acid binding	1.54E-02
71	GO:0004601: peroxidase activity	1.60E-02
72	GO:0016788: hydrolase activity, acting on ester bonds	1.63E-02
73	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.74E-02
74	GO:0004683: calmodulin-dependent protein kinase activity	1.81E-02
75	GO:0008233: peptidase activity	1.95E-02
76	GO:0005096: GTPase activator activity	2.01E-02
77	GO:0004222: metalloendopeptidase activity	2.08E-02
78	GO:0052689: carboxylic ester hydrolase activity	2.19E-02
79	GO:0016787: hydrolase activity	2.35E-02
80	GO:0046872: metal ion binding	2.43E-02
81	GO:0008422: beta-glucosidase activity	2.45E-02
82	GO:0004364: glutathione transferase activity	2.68E-02
83	GO:0035091: phosphatidylinositol binding	2.91E-02
84	GO:0016298: lipase activity	3.49E-02
85	GO:0016301: kinase activity	4.38E-02
86	GO:0016887: ATPase activity	4.52E-02
87	GO:0008026: ATP-dependent helicase activity	4.56E-02

Rank	GO Term	Adjusted P value
1	GO:0000502: proteasome complex	1.91E-06
2	GO:0046861: glyoxysomal membrane	2.99E-06
3	GO:0031597: cytosolic proteasome complex	4.63E-05
4	GO:0031595: nuclear proteasome complex	6.22E-05
5	GO:0009514: glyoxysome	1.02E-04
6	GO:0005773: vacuole	1.07E-04
7	GO:0016442: RISC complex	1.25E-04
8	GO:0008540: proteasome regulatory particle, base subcomplex	1.51E-04
9	GO:0005774: vacuolar membrane	4.58E-04
10	GO:0009530: primary cell wall	4.78E-04
11	GO:0005839: proteasome core complex	5.28E-04
12	GO:0005775: vacuolar lumen	6.85E-04
13	GO:0005776: autophagosome	9.08E-04
14	GO:0000813: ESCRT I complex	1.15E-03
15	GO:0008250: oligosaccharyltransferase complex	1.15E-03
16	GO:0005618: cell wall	2.08E-03
17	GO:0005829: cytosol	2.15E-03
18	GO:0000421: autophagosome membrane	2.29E-03
19	GO:0005783: endoplasmic reticulum	2.46E-03
20	GO:0046930: pore complex	2.61E-03
21	GO:0019773: proteasome core complex, alpha-subunit complex	2.61E-03
22	GO:0005779: integral component of peroxisomal membrane	2.61E-03
23	GO:0010494: cytoplasmic stress granule	2.95E-03
24	GO:0008180: COP9 signalosome	2.95E-03
25	GO:0005765: lysosomal membrane	4.06E-03
26	GO:0048471: perinuclear region of cytoplasm	4.06E-03
27	GO:0005635: nuclear envelope	4.49E-03
28	GO:0030176: integral component of endoplasmic reticulum membrane	5.71E-03
29	GO:0005741: mitochondrial outer membrane	7.56E-03
30	GO:0031410: cytoplasmic vesicle	8.05E-03
31	GO:0005777: peroxisome	1.42E-02
32	GO:0005778: peroxisomal membrane	1.48E-02
33	GO:0016020: membrane	1.54E-02
34	GO:0000932: P-body	1.61E-02
35	GO:0009707: chloroplast outer membrane	1.94E-02
36	GO:0005643: nuclear pore	1.94E-02
37	GO:0000325: plant-type vacuole	2.15E-02
38	GO:0031902: late endosome membrane	2.60E-02
39	GO:0009505: plant-type cell wall	3.83E-02
40	GO:0005834: heterotrimeric G-protein complex	4.01E-02
41	GO:0005886: plasma membrane	4.49E-02
42	GO:0005794: Golgi apparatus	4.96E-02