co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G04790

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
2	GO:2000505: regulation of energy homeostasis	0.00E+00
3	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
4	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
5	GO:1905177: tracheary element differentiation	0.00E+00
6	GO:0045038: protein import into chloroplast thylakoid membrane	1.46E-05
7	GO:0006353: DNA-templated transcription, termination	5.57E-05
8	GO:0051247: positive regulation of protein metabolic process	9.88E-05
9	GO:2000905: negative regulation of starch metabolic process	9.88E-05
10	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	9.88E-05
11	GO:0010080: regulation of floral meristem growth	9.88E-05
12	GO:0010024: phytochromobilin biosynthetic process	2.32E-04
13	GO:0010431: seed maturation	3.84E-04
14	GO:0006788: heme oxidation	3.86E-04
15	GO:0010022: meristem determinacy	3.86E-04
16	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	3.86E-04
17	GO:0048586: regulation of long-day photoperiodism, flowering	3.86E-04
18	GO:0010623: programmed cell death involved in cell development	3.86E-04
19	GO:0006730: one-carbon metabolic process	4.20E-04
20	GO:2001141: regulation of RNA biosynthetic process	5.54E-04
21	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	5.54E-04
22	GO:0051513: regulation of monopolar cell growth	5.54E-04
23	GO:0010239: chloroplast mRNA processing	5.54E-04
24	GO:0042989: sequestering of actin monomers	5.54E-04
25	GO:2000306: positive regulation of photomorphogenesis	7.37E-04
26	GO:0007219: Notch signaling pathway	7.37E-04
27	GO:0010508: positive regulation of autophagy	7.37E-04
28	GO:0030041: actin filament polymerization	9.32E-04
29	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.14E-03
30	GO:0006555: methionine metabolic process	1.14E-03
31	GO:0006655: phosphatidylglycerol biosynthetic process	1.14E-03
32	GO:0010190: cytochrome b6f complex assembly	1.14E-03
33	GO:0010189: vitamin E biosynthetic process	1.36E-03
34	GO:1901259: chloroplast rRNA processing	1.36E-03
35	GO:0017148: negative regulation of translation	1.36E-03
36	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.59E-03
37	GO:0051510: regulation of unidimensional cell growth	1.59E-03
38	GO:0042255: ribosome assembly	1.84E-03
39	GO:0071482: cellular response to light stimulus	2.10E-03
40	GO:0009657: plastid organization	2.10E-03
41	GO:0006098: pentose-phosphate shunt	2.37E-03
42	GO:0010206: photosystem II repair	2.37E-03
43	GO:0035999: tetrahydrofolate interconversion	2.65E-03
44	GO:0009086: methionine biosynthetic process	2.65E-03
45	GO:0016485: protein processing	3.25E-03
46	GO:0006415: translational termination	3.25E-03
47	GO:0043085: positive regulation of catalytic activity	3.25E-03
48	GO:0006352: DNA-templated transcription, initiation	3.25E-03
49	GO:0016024: CDP-diacylglycerol biosynthetic process	3.57E-03
50	GO:0010582: floral meristem determinacy	3.57E-03
51	GO:0006096: glycolytic process	3.59E-03
52	GO:0009725: response to hormone	3.89E-03
53	GO:0006094: gluconeogenesis	3.89E-03
54	GO:0010207: photosystem II assembly	4.22E-03
55	GO:0090351: seedling development	4.57E-03
56	GO:0007010: cytoskeleton organization	5.28E-03
57	GO:0008299: isoprenoid biosynthetic process	5.65E-03
58	GO:0009845: seed germination	5.83E-03
59	GO:0030245: cellulose catabolic process	6.42E-03
60	GO:0010089: xylem development	7.23E-03
61	GO:0019722: calcium-mediated signaling	7.23E-03
62	GO:0009561: megagametogenesis	7.23E-03
63	GO:0008033: tRNA processing	8.07E-03
64	GO:0034220: ion transmembrane transport	8.07E-03
65	GO:0006810: transport	8.15E-03
66	GO:0048544: recognition of pollen	8.94E-03
67	GO:0008654: phospholipid biosynthetic process	9.39E-03
68	GO:0000302: response to reactive oxygen species	9.85E-03
69	GO:0032502: developmental process	1.03E-02
70	GO:0006914: autophagy	1.13E-02
71	GO:0007267: cell-cell signaling	1.18E-02
72	GO:0001666: response to hypoxia	1.28E-02
73	GO:0010027: thylakoid membrane organization	1.28E-02
74	GO:0010029: regulation of seed germination	1.33E-02
75	GO:0006499: N-terminal protein myristoylation	1.65E-02
76	GO:0007568: aging	1.71E-02
77	GO:0048527: lateral root development	1.71E-02
78	GO:0045087: innate immune response	1.82E-02
79	GO:0034599: cellular response to oxidative stress	1.88E-02
80	GO:0006839: mitochondrial transport	2.00E-02
81	GO:0009744: response to sucrose	2.18E-02
82	GO:0009644: response to high light intensity	2.31E-02
83	GO:0006364: rRNA processing	2.70E-02
84	GO:0009740: gibberellic acid mediated signaling pathway	3.32E-02
85	GO:0006396: RNA processing	3.54E-02
86	GO:0042744: hydrogen peroxide catabolic process	4.46E-02

Rank	GO Term	Adjusted P value
1	GO:0005048: signal sequence binding	0.00E+00
2	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
3	GO:0010276: phytol kinase activity	0.00E+00
4	GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity	9.88E-05
5	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	2.32E-04
6	GO:0005528: FK506 binding	3.16E-04
7	GO:0070402: NADPH binding	3.86E-04
8	GO:0043023: ribosomal large subunit binding	5.54E-04
9	GO:0016149: translation release factor activity, codon specific	5.54E-04
10	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	7.37E-04
11	GO:0001053: plastid sigma factor activity	7.37E-04
12	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	7.37E-04
13	GO:0016987: sigma factor activity	7.37E-04
14	GO:0004392: heme oxygenase (decyclizing) activity	7.37E-04
15	GO:0003785: actin monomer binding	9.32E-04
16	GO:0008200: ion channel inhibitor activity	1.14E-03
17	GO:0004605: phosphatidate cytidylyltransferase activity	1.14E-03
18	GO:0004332: fructose-bisphosphate aldolase activity	1.14E-03
19	GO:0004130: cytochrome-c peroxidase activity	1.14E-03
20	GO:0004462: lactoylglutathione lyase activity	1.14E-03
21	GO:0016688: L-ascorbate peroxidase activity	1.14E-03
22	GO:0004017: adenylate kinase activity	1.36E-03
23	GO:0008312: 7S RNA binding	1.84E-03
24	GO:0043022: ribosome binding	1.84E-03
25	GO:0003747: translation release factor activity	2.37E-03
26	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.64E-03
27	GO:0030955: potassium ion binding	2.65E-03
28	GO:0004743: pyruvate kinase activity	2.65E-03
29	GO:0003690: double-stranded DNA binding	3.14E-03
30	GO:0031072: heat shock protein binding	3.89E-03
31	GO:0004175: endopeptidase activity	4.22E-03
32	GO:0008266: poly(U) RNA binding	4.22E-03
33	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	4.22E-03
34	GO:0016746: transferase activity, transferring acyl groups	4.44E-03
35	GO:0019843: rRNA binding	5.38E-03
36	GO:0005345: purine nucleobase transmembrane transporter activity	5.65E-03
37	GO:0008810: cellulase activity	6.82E-03
38	GO:0003727: single-stranded RNA binding	7.23E-03
39	GO:0016853: isomerase activity	8.94E-03
40	GO:0004872: receptor activity	9.39E-03
41	GO:0048038: quinone binding	9.85E-03
42	GO:0015250: water channel activity	1.28E-02
43	GO:0004721: phosphoprotein phosphatase activity	1.43E-02
44	GO:0008236: serine-type peptidase activity	1.49E-02
45	GO:0030145: manganese ion binding	1.71E-02
46	GO:0003924: GTPase activity	2.11E-02
47	GO:0043621: protein self-association	2.31E-02
48	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.70E-02
49	GO:0003729: mRNA binding	3.16E-02
50	GO:0003779: actin binding	3.39E-02
51	GO:0051082: unfolded protein binding	3.47E-02
52	GO:0003723: RNA binding	3.60E-02
53	GO:0016829: lyase activity	4.30E-02
54	GO:0004252: serine-type endopeptidase activity	4.38E-02
55	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	2.65E-16
2	GO:0080085: signal recognition particle, chloroplast targeting	5.13E-07
3	GO:0009570: chloroplast stroma	2.03E-06
4	GO:0009535: chloroplast thylakoid membrane	5.33E-05
5	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	7.06E-05
6	GO:0070765: gamma-secretase complex	9.88E-05
7	GO:0042651: thylakoid membrane	3.49E-04
8	GO:0009543: chloroplast thylakoid lumen	6.91E-04
9	GO:0042807: central vacuole	1.59E-03
10	GO:0009579: thylakoid	2.05E-03
11	GO:0031977: thylakoid lumen	2.09E-03
12	GO:0000326: protein storage vacuole	2.10E-03
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.37E-03
14	GO:0000311: plastid large ribosomal subunit	3.57E-03
15	GO:0005938: cell cortex	3.89E-03
16	GO:0015629: actin cytoskeleton	6.82E-03
17	GO:0009534: chloroplast thylakoid	1.00E-02
18	GO:0010319: stromule	1.18E-02
19	GO:0030529: intracellular ribonucleoprotein complex	1.28E-02
20	GO:0031969: chloroplast membrane	1.43E-02
21	GO:0015934: large ribosomal subunit	1.71E-02
22	GO:0005887: integral component of plasma membrane	2.87E-02
23	GO:0005623: cell	4.15E-02
24	GO:0009941: chloroplast envelope	4.57E-02