co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G04520

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019427: acetyl-CoA biosynthetic process from acetate	0.00E+00
2	GO:0010398: xylogalacturonan metabolic process	0.00E+00
3	GO:0006680: glucosylceramide catabolic process	4.18E-05
4	GO:0006083: acetate metabolic process	4.18E-05
5	GO:0016192: vesicle-mediated transport	5.50E-05
6	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	1.04E-04
7	GO:0061158: 3'-UTR-mediated mRNA destabilization	1.78E-04
8	GO:0000187: activation of MAPK activity	2.63E-04
9	GO:0006621: protein retention in ER lumen	3.53E-04
10	GO:0006564: L-serine biosynthetic process	4.50E-04
11	GO:0060918: auxin transport	5.51E-04
12	GO:0006099: tricarboxylic acid cycle	6.27E-04
13	GO:0009082: branched-chain amino acid biosynthetic process	6.58E-04
14	GO:0009099: valine biosynthetic process	6.58E-04
15	GO:0071669: plant-type cell wall organization or biogenesis	7.69E-04
16	GO:0000209: protein polyubiquitination	7.95E-04
17	GO:0009819: drought recovery	8.84E-04
18	GO:0006102: isocitrate metabolic process	8.84E-04
19	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	9.18E-04
20	GO:0009097: isoleucine biosynthetic process	1.00E-03
21	GO:0009098: leucine biosynthetic process	1.25E-03
22	GO:0071365: cellular response to auxin stimulus	1.67E-03
23	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	1.82E-03
24	GO:0055046: microgametogenesis	1.82E-03
25	GO:0007030: Golgi organization	2.13E-03
26	GO:0034976: response to endoplasmic reticulum stress	2.29E-03
27	GO:0000162: tryptophan biosynthetic process	2.29E-03
28	GO:0010073: meristem maintenance	2.62E-03
29	GO:0009814: defense response, incompatible interaction	2.97E-03
30	GO:0030433: ubiquitin-dependent ERAD pathway	2.97E-03
31	GO:0009561: megagametogenesis	3.33E-03
32	GO:0009306: protein secretion	3.33E-03
33	GO:0010051: xylem and phloem pattern formation	3.71E-03
34	GO:0045489: pectin biosynthetic process	3.91E-03
35	GO:0030163: protein catabolic process	4.93E-03
36	GO:0006464: cellular protein modification process	5.15E-03
37	GO:0051607: defense response to virus	5.59E-03
38	GO:0009627: systemic acquired resistance	6.27E-03
39	GO:0009407: toxin catabolic process	7.47E-03
40	GO:0009631: cold acclimation	7.72E-03
41	GO:0006631: fatty acid metabolic process	9.28E-03
42	GO:0009636: response to toxic substance	1.07E-02
43	GO:0000165: MAPK cascade	1.12E-02
44	GO:0031347: regulation of defense response	1.12E-02
45	GO:0051603: proteolysis involved in cellular protein catabolic process	1.24E-02
46	GO:0051726: regulation of cell cycle	1.62E-02
47	GO:0009651: response to salt stress	2.11E-02
48	GO:0016036: cellular response to phosphate starvation	2.18E-02
49	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.48E-02
50	GO:0009826: unidimensional cell growth	3.05E-02
51	GO:0015031: protein transport	3.11E-02
52	GO:0006970: response to osmotic stress	3.30E-02
53	GO:0045454: cell redox homeostasis	4.15E-02
54	GO:0006886: intracellular protein transport	4.24E-02
55	GO:0009751: response to salicylic acid	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0005046: KDEL sequence binding	0.00E+00
2	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
3	GO:0004348: glucosylceramidase activity	4.18E-05
4	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	4.18E-05
5	GO:0003987: acetate-CoA ligase activity	4.18E-05
6	GO:0004425: indole-3-glycerol-phosphate synthase activity	4.18E-05
7	GO:0004617: phosphoglycerate dehydrogenase activity	1.04E-04
8	GO:0008805: carbon-monoxide oxygenase activity	1.04E-04
9	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	1.78E-04
10	GO:0004449: isocitrate dehydrogenase (NAD+) activity	2.63E-04
11	GO:0052656: L-isoleucine transaminase activity	2.63E-04
12	GO:0052654: L-leucine transaminase activity	2.63E-04
13	GO:0052655: L-valine transaminase activity	2.63E-04
14	GO:0004084: branched-chain-amino-acid transaminase activity	3.53E-04
15	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	3.53E-04
16	GO:0046923: ER retention sequence binding	3.53E-04
17	GO:0016208: AMP binding	5.51E-04
18	GO:0035252: UDP-xylosyltransferase activity	5.51E-04
19	GO:0008320: protein transmembrane transporter activity	7.69E-04
20	GO:0004708: MAP kinase kinase activity	8.84E-04
21	GO:0031624: ubiquitin conjugating enzyme binding	1.97E-03
22	GO:0004190: aspartic-type endopeptidase activity	2.13E-03
23	GO:0003756: protein disulfide isomerase activity	3.33E-03
24	GO:0003727: single-stranded RNA binding	3.33E-03
25	GO:0001085: RNA polymerase II transcription factor binding	3.91E-03
26	GO:0010181: FMN binding	4.11E-03
27	GO:0004872: receptor activity	4.31E-03
28	GO:0061630: ubiquitin protein ligase activity	4.84E-03
29	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	5.36E-03
30	GO:0016722: oxidoreductase activity, oxidizing metal ions	5.36E-03
31	GO:0016597: amino acid binding	5.59E-03
32	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	7.72E-03
33	GO:0004712: protein serine/threonine/tyrosine kinase activity	8.75E-03
34	GO:0004364: glutathione transferase activity	9.55E-03
35	GO:0051287: NAD binding	1.12E-02
36	GO:0031625: ubiquitin protein ligase binding	1.30E-02
37	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.39E-02
38	GO:0016740: transferase activity	1.47E-02
39	GO:0016746: transferase activity, transferring acyl groups	1.59E-02
40	GO:0005507: copper ion binding	1.72E-02
41	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	2.00E-02
42	GO:0016757: transferase activity, transferring glycosyl groups	2.14E-02
43	GO:0008194: UDP-glycosyltransferase activity	2.48E-02
44	GO:0003824: catalytic activity	2.69E-02
45	GO:0003682: chromatin binding	3.26E-02
46	GO:0004674: protein serine/threonine kinase activity	3.40E-02
47	GO:0003729: mRNA binding	3.64E-02
48	GO:0008270: zinc ion binding	3.74E-02

Rank	GO Term	Adjusted P value
1	GO:0005801: cis-Golgi network	7.76E-06
2	GO:0005794: Golgi apparatus	3.37E-05
3	GO:0045252: oxoglutarate dehydrogenase complex	4.18E-05
4	GO:0005783: endoplasmic reticulum	4.68E-05
5	GO:0030134: ER to Golgi transport vesicle	1.04E-04
6	GO:0030173: integral component of Golgi membrane	6.58E-04
7	GO:0031982: vesicle	8.84E-04
8	GO:0009514: glyoxysome	1.00E-03
9	GO:0031901: early endosome membrane	1.13E-03
10	GO:0005789: endoplasmic reticulum membrane	1.52E-03
11	GO:0016592: mediator complex	4.72E-03
12	GO:0005774: vacuolar membrane	5.27E-03
13	GO:0005788: endoplasmic reticulum lumen	6.04E-03
14	GO:0005667: transcription factor complex	6.27E-03
15	GO:0000151: ubiquitin ligase complex	6.98E-03
16	GO:0005886: plasma membrane	9.88E-03
17	GO:0005773: vacuole	1.01E-02
18	GO:0005623: cell	1.86E-02
19	GO:0005802: trans-Golgi network	1.94E-02
20	GO:0005768: endosome	2.20E-02
21	GO:0009705: plant-type vacuole membrane	2.29E-02
22	GO:0016021: integral component of membrane	2.72E-02
23	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	3.34E-02
24	GO:0009570: chloroplast stroma	4.83E-02