co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G04440

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0031116: positive regulation of microtubule polymerization	0.00E+00
2	GO:0043972: histone H3-K23 acetylation	0.00E+00
3	GO:0090358: positive regulation of tryptophan metabolic process	0.00E+00
4	GO:0044154: histone H3-K14 acetylation	0.00E+00
5	GO:1901698: response to nitrogen compound	0.00E+00
6	GO:2000023: regulation of lateral root development	0.00E+00
7	GO:0045176: apical protein localization	0.00E+00
8	GO:0046460: neutral lipid biosynthetic process	0.00E+00
9	GO:0090355: positive regulation of auxin metabolic process	0.00E+00
10	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	1.02E-04
11	GO:0010480: microsporocyte differentiation	2.06E-04
12	GO:0051171: regulation of nitrogen compound metabolic process	2.06E-04
13	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	2.06E-04
14	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	2.06E-04
15	GO:1902265: abscisic acid homeostasis	2.06E-04
16	GO:0043971: histone H3-K18 acetylation	2.06E-04
17	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	4.62E-04
18	GO:0010275: NAD(P)H dehydrogenase complex assembly	4.62E-04
19	GO:0048255: mRNA stabilization	4.62E-04
20	GO:0006898: receptor-mediated endocytosis	4.62E-04
21	GO:0080005: photosystem stoichiometry adjustment	4.62E-04
22	GO:0009451: RNA modification	6.68E-04
23	GO:0042780: tRNA 3'-end processing	7.52E-04
24	GO:0001578: microtubule bundle formation	7.52E-04
25	GO:0045493: xylan catabolic process	7.52E-04
26	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	7.52E-04
27	GO:0031022: nuclear migration along microfilament	7.52E-04
28	GO:0006013: mannose metabolic process	7.52E-04
29	GO:0071705: nitrogen compound transport	7.52E-04
30	GO:0043622: cortical microtubule organization	9.35E-04
31	GO:0010255: glucose mediated signaling pathway	1.07E-03
32	GO:0009800: cinnamic acid biosynthetic process	1.07E-03
33	GO:0010306: rhamnogalacturonan II biosynthetic process	1.07E-03
34	GO:0019748: secondary metabolic process	1.12E-03
35	GO:0009902: chloroplast relocation	1.43E-03
36	GO:0051322: anaphase	1.43E-03
37	GO:0071249: cellular response to nitrate	1.43E-03
38	GO:0007020: microtubule nucleation	1.43E-03
39	GO:0015846: polyamine transport	1.43E-03
40	GO:0048868: pollen tube development	1.66E-03
41	GO:0031365: N-terminal protein amino acid modification	1.81E-03
42	GO:0046785: microtubule polymerization	1.81E-03
43	GO:0009416: response to light stimulus	1.83E-03
44	GO:0048827: phyllome development	2.24E-03
45	GO:0010315: auxin efflux	2.24E-03
46	GO:0006559: L-phenylalanine catabolic process	2.24E-03
47	GO:0009903: chloroplast avoidance movement	2.69E-03
48	GO:0034389: lipid particle organization	2.69E-03
49	GO:0006401: RNA catabolic process	3.16E-03
50	GO:0009610: response to symbiotic fungus	3.16E-03
51	GO:0048528: post-embryonic root development	3.16E-03
52	GO:0048437: floral organ development	3.16E-03
53	GO:0034968: histone lysine methylation	3.67E-03
54	GO:0007155: cell adhesion	3.67E-03
55	GO:0009787: regulation of abscisic acid-activated signaling pathway	3.67E-03
56	GO:0006353: DNA-templated transcription, termination	3.67E-03
57	GO:0030244: cellulose biosynthetic process	3.82E-03
58	GO:0007389: pattern specification process	4.20E-03
59	GO:0044030: regulation of DNA methylation	4.20E-03
60	GO:0006002: fructose 6-phosphate metabolic process	4.20E-03
61	GO:0009827: plant-type cell wall modification	4.20E-03
62	GO:0009834: plant-type secondary cell wall biogenesis	4.21E-03
63	GO:0009739: response to gibberellin	4.29E-03
64	GO:0019432: triglyceride biosynthetic process	4.75E-03
65	GO:0008202: steroid metabolic process	5.32E-03
66	GO:0048354: mucilage biosynthetic process involved in seed coat development	5.32E-03
67	GO:0010380: regulation of chlorophyll biosynthetic process	5.32E-03
68	GO:0016571: histone methylation	5.32E-03
69	GO:0006508: proteolysis	5.58E-03
70	GO:0010192: mucilage biosynthetic process	5.93E-03
71	GO:0008283: cell proliferation	6.23E-03
72	GO:0009750: response to fructose	6.55E-03
73	GO:0048229: gametophyte development	6.55E-03
74	GO:0006415: translational termination	6.55E-03
75	GO:0015706: nitrate transport	7.20E-03
76	GO:0010229: inflorescence development	7.87E-03
77	GO:0010075: regulation of meristem growth	7.87E-03
78	GO:0030048: actin filament-based movement	7.87E-03
79	GO:0010540: basipetal auxin transport	8.56E-03
80	GO:0009934: regulation of meristem structural organization	8.56E-03
81	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	8.89E-03
82	GO:0009793: embryo development ending in seed dormancy	9.17E-03
83	GO:0009825: multidimensional cell growth	9.27E-03
84	GO:0080188: RNA-directed DNA methylation	9.27E-03
85	GO:0010167: response to nitrate	9.27E-03
86	GO:0006863: purine nucleobase transport	1.00E-02
87	GO:0009833: plant-type primary cell wall biogenesis	1.00E-02
88	GO:0006071: glycerol metabolic process	1.00E-02
89	GO:0000162: tryptophan biosynthetic process	1.00E-02
90	GO:0006289: nucleotide-excision repair	1.08E-02
91	GO:0006338: chromatin remodeling	1.08E-02
92	GO:0010187: negative regulation of seed germination	1.08E-02
93	GO:0009740: gibberellic acid mediated signaling pathway	1.13E-02
94	GO:0010073: meristem maintenance	1.15E-02
95	GO:0051726: regulation of cell cycle	1.27E-02
96	GO:0016226: iron-sulfur cluster assembly	1.32E-02
97	GO:0009693: ethylene biosynthetic process	1.40E-02
98	GO:0048653: anther development	1.66E-02
99	GO:0045489: pectin biosynthetic process	1.75E-02
100	GO:0006633: fatty acid biosynthetic process	1.89E-02
101	GO:0048825: cotyledon development	1.94E-02
102	GO:0009749: response to glucose	1.94E-02
103	GO:0009851: auxin biosynthetic process	1.94E-02
104	GO:0080156: mitochondrial mRNA modification	2.03E-02
105	GO:0010583: response to cyclopentenone	2.13E-02
106	GO:0071555: cell wall organization	2.15E-02
107	GO:0009734: auxin-activated signaling pathway	2.16E-02
108	GO:0010252: auxin homeostasis	2.33E-02
109	GO:0010468: regulation of gene expression	2.48E-02
110	GO:0000910: cytokinesis	2.54E-02
111	GO:0016126: sterol biosynthetic process	2.64E-02
112	GO:0009911: positive regulation of flower development	2.64E-02
113	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.75E-02
114	GO:0010029: regulation of seed germination	2.75E-02
115	GO:0009738: abscisic acid-activated signaling pathway	2.76E-02
116	GO:0010411: xyloglucan metabolic process	2.97E-02
117	GO:0016049: cell growth	3.08E-02
118	GO:0008219: cell death	3.19E-02
119	GO:0009658: chloroplast organization	3.22E-02
120	GO:0009832: plant-type cell wall biogenesis	3.31E-02
121	GO:0010311: lateral root formation	3.31E-02
122	GO:0006811: ion transport	3.42E-02
123	GO:0009910: negative regulation of flower development	3.54E-02
124	GO:0048527: lateral root development	3.54E-02
125	GO:0007049: cell cycle	3.59E-02
126	GO:0009637: response to blue light	3.78E-02
127	GO:0009853: photorespiration	3.78E-02
128	GO:0055085: transmembrane transport	3.87E-02
129	GO:0046777: protein autophosphorylation	4.25E-02
130	GO:0009926: auxin polar transport	4.52E-02
131	GO:0009744: response to sucrose	4.52E-02
132	GO:0051707: response to other organism	4.52E-02
133	GO:0006355: regulation of transcription, DNA-templated	4.59E-02
134	GO:0006952: defense response	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0019808: polyamine binding	0.00E+00
2	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
3	GO:0008859: exoribonuclease II activity	0.00E+00
4	GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity	0.00E+00
5	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
6	GO:0017091: AU-rich element binding	2.06E-04
7	GO:0047807: cytokinin 7-beta-glucosyltransferase activity	2.06E-04
8	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	2.06E-04
9	GO:0080062: cytokinin 9-beta-glucosyltransferase activity	2.06E-04
10	GO:0008327: methyl-CpG binding	4.23E-04
11	GO:0004047: aminomethyltransferase activity	4.62E-04
12	GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity	4.62E-04
13	GO:0004081: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity	4.62E-04
14	GO:0032549: ribonucleoside binding	7.52E-04
15	GO:0016805: dipeptidase activity	7.52E-04
16	GO:0010429: methyl-CpNpN binding	7.52E-04
17	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	7.52E-04
18	GO:0045548: phenylalanine ammonia-lyase activity	7.52E-04
19	GO:0010428: methyl-CpNpG binding	7.52E-04
20	GO:0042781: 3'-tRNA processing endoribonuclease activity	7.52E-04
21	GO:0004519: endonuclease activity	7.79E-04
22	GO:0004185: serine-type carboxypeptidase activity	8.26E-04
23	GO:0004176: ATP-dependent peptidase activity	1.02E-03
24	GO:0000254: C-4 methylsterol oxidase activity	1.07E-03
25	GO:0046556: alpha-L-arabinofuranosidase activity	1.43E-03
26	GO:0080032: methyl jasmonate esterase activity	1.43E-03
27	GO:0010385: double-stranded methylated DNA binding	1.43E-03
28	GO:0070628: proteasome binding	1.43E-03
29	GO:0009044: xylan 1,4-beta-xylosidase activity	1.43E-03
30	GO:0019901: protein kinase binding	1.91E-03
31	GO:0031593: polyubiquitin binding	2.24E-03
32	GO:0008237: metallopeptidase activity	2.62E-03
33	GO:0004144: diacylglycerol O-acyltransferase activity	2.69E-03
34	GO:0004559: alpha-mannosidase activity	2.69E-03
35	GO:0019899: enzyme binding	3.16E-03
36	GO:0008235: metalloexopeptidase activity	3.16E-03
37	GO:0003872: 6-phosphofructokinase activity	3.16E-03
38	GO:0008142: oxysterol binding	4.20E-03
39	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	4.21E-03
40	GO:0003747: translation release factor activity	4.75E-03
41	GO:0003678: DNA helicase activity	4.75E-03
42	GO:0009672: auxin:proton symporter activity	5.32E-03
43	GO:0042393: histone binding	5.51E-03
44	GO:0015020: glucuronosyltransferase activity	5.93E-03
45	GO:0001054: RNA polymerase I activity	6.55E-03
46	GO:0004177: aminopeptidase activity	6.55E-03
47	GO:0043621: protein self-association	6.74E-03
48	GO:0000175: 3'-5'-exoribonuclease activity	7.87E-03
49	GO:0010329: auxin efflux transmembrane transporter activity	7.87E-03
50	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	8.56E-03
51	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.00E-02
52	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.00E-02
53	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.00E-02
54	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.03E-02
55	GO:0043130: ubiquitin binding	1.08E-02
56	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.09E-02
57	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.09E-02
58	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.13E-02
59	GO:0022857: transmembrane transporter activity	1.13E-02
60	GO:0004871: signal transducer activity	1.14E-02
61	GO:0005345: purine nucleobase transmembrane transporter activity	1.15E-02
62	GO:0030246: carbohydrate binding	1.17E-02
63	GO:0033612: receptor serine/threonine kinase binding	1.23E-02
64	GO:0004540: ribonuclease activity	1.23E-02
65	GO:0016760: cellulose synthase (UDP-forming) activity	1.40E-02
66	GO:0018024: histone-lysine N-methyltransferase activity	1.57E-02
67	GO:0004402: histone acetyltransferase activity	1.66E-02
68	GO:0003723: RNA binding	1.68E-02
69	GO:0001085: RNA polymerase II transcription factor binding	1.75E-02
70	GO:0008017: microtubule binding	2.18E-02
71	GO:0008194: UDP-glycosyltransferase activity	2.33E-02
72	GO:0016759: cellulose synthase activity	2.33E-02
73	GO:0003684: damaged DNA binding	2.33E-02
74	GO:0016413: O-acetyltransferase activity	2.54E-02
75	GO:0003676: nucleic acid binding	2.75E-02
76	GO:0004806: triglyceride lipase activity	2.97E-02
77	GO:0030247: polysaccharide binding	2.97E-02
78	GO:0004721: phosphoprotein phosphatase activity	2.97E-02
79	GO:0046982: protein heterodimerization activity	3.16E-02
80	GO:0016788: hydrolase activity, acting on ester bonds	3.28E-02
81	GO:0004222: metalloendopeptidase activity	3.42E-02
82	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	3.54E-02
83	GO:0016301: kinase activity	4.34E-02
84	GO:0005524: ATP binding	4.44E-02
85	GO:0035091: phosphatidylinositol binding	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0042597: periplasmic space	0.00E+00
2	GO:0010005: cortical microtubule, transverse to long axis	1.02E-04
3	GO:0010370: perinucleolar chromocenter	2.06E-04
4	GO:0009505: plant-type cell wall	2.07E-04
5	GO:0010330: cellulose synthase complex	7.52E-04
6	GO:0009897: external side of plasma membrane	7.52E-04
7	GO:0009507: chloroplast	7.59E-04
8	GO:0072686: mitotic spindle	1.81E-03
9	GO:0005945: 6-phosphofructokinase complex	1.81E-03
10	GO:0000178: exosome (RNase complex)	1.81E-03
11	GO:0031982: vesicle	3.67E-03
12	GO:0005811: lipid particle	4.20E-03
13	GO:0005720: nuclear heterochromatin	4.75E-03
14	GO:0005736: DNA-directed RNA polymerase I complex	4.75E-03
15	GO:0005819: spindle	5.28E-03
16	GO:0055028: cortical microtubule	5.93E-03
17	GO:0009574: preprophase band	7.87E-03
18	GO:0005938: cell cortex	7.87E-03
19	GO:0016602: CCAAT-binding factor complex	7.87E-03
20	GO:0005886: plasma membrane	1.06E-02
21	GO:0045271: respiratory chain complex I	1.15E-02
22	GO:0000775: chromosome, centromeric region	1.32E-02
23	GO:0005802: trans-Golgi network	1.52E-02
24	GO:0043231: intracellular membrane-bounded organelle	1.58E-02
25	GO:0005770: late endosome	1.75E-02
26	GO:0005768: endosome	1.84E-02
27	GO:0000932: P-body	2.64E-02
28	GO:0046658: anchored component of plasma membrane	2.75E-02
29	GO:0005667: transcription factor complex	2.86E-02
30	GO:0005874: microtubule	3.85E-02
31	GO:0005856: cytoskeleton	4.91E-02
32	GO:0031225: anchored component of membrane	4.97E-02