co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G04360

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
2	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
3	GO:0042407: cristae formation	0.00E+00
4	GO:0033614: chloroplast proton-transporting ATP synthase complex assembly	0.00E+00
5	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
6	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
7	GO:0015717: triose phosphate transport	0.00E+00
8	GO:0002184: cytoplasmic translational termination	0.00E+00
9	GO:0006849: plasma membrane pyruvate transport	0.00E+00
10	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
11	GO:0042026: protein refolding	3.37E-06
12	GO:0015995: chlorophyll biosynthetic process	4.67E-06
13	GO:0032544: plastid translation	1.18E-05
14	GO:0009658: chloroplast organization	1.35E-05
15	GO:0006633: fatty acid biosynthetic process	2.88E-05
16	GO:0015979: photosynthesis	3.89E-05
17	GO:0061077: chaperone-mediated protein folding	1.51E-04
18	GO:0006458: 'de novo' protein folding	1.88E-04
19	GO:1901259: chloroplast rRNA processing	1.88E-04
20	GO:0048437: floral organ development	2.45E-04
21	GO:0005980: glycogen catabolic process	3.04E-04
22	GO:0030198: extracellular matrix organization	3.04E-04
23	GO:0010442: guard cell morphogenesis	3.04E-04
24	GO:0010480: microsporocyte differentiation	3.04E-04
25	GO:0042371: vitamin K biosynthetic process	3.04E-04
26	GO:0043686: co-translational protein modification	3.04E-04
27	GO:0043007: maintenance of rDNA	3.04E-04
28	GO:0034337: RNA folding	3.04E-04
29	GO:0005991: trehalose metabolic process	3.04E-04
30	GO:0000023: maltose metabolic process	3.04E-04
31	GO:0005978: glycogen biosynthetic process	3.09E-04
32	GO:0019252: starch biosynthetic process	3.65E-04
33	GO:0010206: photosystem II repair	4.57E-04
34	GO:0006457: protein folding	6.28E-04
35	GO:0009629: response to gravity	6.66E-04
36	GO:0019388: galactose catabolic process	6.66E-04
37	GO:0006423: cysteinyl-tRNA aminoacylation	6.66E-04
38	GO:0007154: cell communication	6.66E-04
39	GO:0018026: peptidyl-lysine monomethylation	6.66E-04
40	GO:0071497: cellular response to freezing	6.66E-04
41	GO:0010270: photosystem II oxygen evolving complex assembly	6.66E-04
42	GO:0052541: plant-type cell wall cellulose metabolic process	6.66E-04
43	GO:0009817: defense response to fungus, incompatible interaction	8.97E-04
44	GO:2000012: regulation of auxin polar transport	9.40E-04
45	GO:0010020: chloroplast fission	1.06E-03
46	GO:0010207: photosystem II assembly	1.06E-03
47	GO:0009405: pathogenesis	1.08E-03
48	GO:0035436: triose phosphate transmembrane transport	1.08E-03
49	GO:0006696: ergosterol biosynthetic process	1.08E-03
50	GO:0009790: embryo development	1.16E-03
51	GO:0006241: CTP biosynthetic process	1.55E-03
52	GO:0009647: skotomorphogenesis	1.55E-03
53	GO:0006165: nucleoside diphosphate phosphorylation	1.55E-03
54	GO:0006228: UTP biosynthetic process	1.55E-03
55	GO:0010731: protein glutathionylation	1.55E-03
56	GO:0046739: transport of virus in multicellular host	1.55E-03
57	GO:0009590: detection of gravity	1.55E-03
58	GO:0043572: plastid fission	1.55E-03
59	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.55E-03
60	GO:0045338: farnesyl diphosphate metabolic process	1.55E-03
61	GO:0006020: inositol metabolic process	1.55E-03
62	GO:0071484: cellular response to light intensity	1.55E-03
63	GO:0051085: chaperone mediated protein folding requiring cofactor	1.55E-03
64	GO:0010601: positive regulation of auxin biosynthetic process	1.55E-03
65	GO:0006418: tRNA aminoacylation for protein translation	1.60E-03
66	GO:0007005: mitochondrion organization	1.92E-03
67	GO:0006183: GTP biosynthetic process	2.07E-03
68	GO:0022622: root system development	2.07E-03
69	GO:0015713: phosphoglycerate transport	2.07E-03
70	GO:0006021: inositol biosynthetic process	2.07E-03
71	GO:1901141: regulation of lignin biosynthetic process	2.07E-03
72	GO:0019464: glycine decarboxylation via glycine cleavage system	2.07E-03
73	GO:0010236: plastoquinone biosynthetic process	2.65E-03
74	GO:0031365: N-terminal protein amino acid modification	2.65E-03
75	GO:0010197: polar nucleus fusion	2.88E-03
76	GO:0010182: sugar mediated signaling pathway	2.88E-03
77	GO:0009409: response to cold	3.25E-03
78	GO:0006828: manganese ion transport	3.27E-03
79	GO:0042793: transcription from plastid promoter	3.27E-03
80	GO:0010190: cytochrome b6f complex assembly	3.27E-03
81	GO:0018258: protein O-linked glycosylation via hydroxyproline	3.27E-03
82	GO:0000741: karyogamy	3.27E-03
83	GO:0046855: inositol phosphate dephosphorylation	3.27E-03
84	GO:0009643: photosynthetic acclimation	3.27E-03
85	GO:0006014: D-ribose metabolic process	3.27E-03
86	GO:0010405: arabinogalactan protein metabolic process	3.27E-03
87	GO:0006751: glutathione catabolic process	3.27E-03
88	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.27E-03
89	GO:0000470: maturation of LSU-rRNA	3.27E-03
90	GO:0042372: phylloquinone biosynthetic process	3.93E-03
91	GO:2000033: regulation of seed dormancy process	3.93E-03
92	GO:0009955: adaxial/abaxial pattern specification	3.93E-03
93	GO:0010444: guard mother cell differentiation	4.64E-03
94	GO:0032880: regulation of protein localization	4.64E-03
95	GO:0009772: photosynthetic electron transport in photosystem II	4.64E-03
96	GO:0010027: thylakoid membrane organization	5.13E-03
97	GO:0006353: DNA-templated transcription, termination	5.39E-03
98	GO:0070413: trehalose metabolism in response to stress	5.39E-03
99	GO:0009607: response to biotic stimulus	5.42E-03
100	GO:0010497: plasmodesmata-mediated intercellular transport	6.18E-03
101	GO:0006526: arginine biosynthetic process	6.18E-03
102	GO:0006783: heme biosynthetic process	7.01E-03
103	GO:0009813: flavonoid biosynthetic process	7.03E-03
104	GO:0071577: zinc II ion transmembrane transport	7.87E-03
105	GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	7.87E-03
106	GO:0009638: phototropism	7.87E-03
107	GO:0043067: regulation of programmed cell death	7.87E-03
108	GO:0010162: seed dormancy process	8.77E-03
109	GO:0006782: protoporphyrinogen IX biosynthetic process	8.77E-03
110	GO:0045036: protein targeting to chloroplast	8.77E-03
111	GO:0006816: calcium ion transport	9.71E-03
112	GO:0009773: photosynthetic electron transport in photosystem I	9.71E-03
113	GO:0009073: aromatic amino acid family biosynthetic process	9.71E-03
114	GO:0006415: translational termination	9.71E-03
115	GO:0018119: peptidyl-cysteine S-nitrosylation	9.71E-03
116	GO:0048229: gametophyte development	9.71E-03
117	GO:0000038: very long-chain fatty acid metabolic process	9.71E-03
118	GO:0006412: translation	1.05E-02
119	GO:0005983: starch catabolic process	1.07E-02
120	GO:0016024: CDP-diacylglycerol biosynthetic process	1.07E-02
121	GO:0006790: sulfur compound metabolic process	1.07E-02
122	GO:0030048: actin filament-based movement	1.17E-02
123	GO:0010102: lateral root morphogenesis	1.17E-02
124	GO:0006006: glucose metabolic process	1.17E-02
125	GO:0050826: response to freezing	1.17E-02
126	GO:0010075: regulation of meristem growth	1.17E-02
127	GO:0005975: carbohydrate metabolic process	1.22E-02
128	GO:0010143: cutin biosynthetic process	1.27E-02
129	GO:0019253: reductive pentose-phosphate cycle	1.27E-02
130	GO:0009266: response to temperature stimulus	1.27E-02
131	GO:0009934: regulation of meristem structural organization	1.27E-02
132	GO:0006855: drug transmembrane transport	1.28E-02
133	GO:0046854: phosphatidylinositol phosphorylation	1.38E-02
134	GO:0009585: red, far-red light phototransduction	1.48E-02
135	GO:0006071: glycerol metabolic process	1.49E-02
136	GO:0009735: response to cytokinin	1.53E-02
137	GO:0051017: actin filament bundle assembly	1.60E-02
138	GO:0005992: trehalose biosynthetic process	1.60E-02
139	GO:0010026: trichome differentiation	1.72E-02
140	GO:0009768: photosynthesis, light harvesting in photosystem I	1.72E-02
141	GO:0006508: proteolysis	1.87E-02
142	GO:0016226: iron-sulfur cluster assembly	1.96E-02
143	GO:0006730: one-carbon metabolic process	1.96E-02
144	GO:0030245: cellulose catabolic process	1.96E-02
145	GO:0009411: response to UV	2.09E-02
146	GO:0006012: galactose metabolic process	2.09E-02
147	GO:0008284: positive regulation of cell proliferation	2.35E-02
148	GO:0016117: carotenoid biosynthetic process	2.35E-02
149	GO:0042335: cuticle development	2.48E-02
150	GO:0048653: anther development	2.48E-02
151	GO:0009958: positive gravitropism	2.62E-02
152	GO:0006520: cellular amino acid metabolic process	2.62E-02
153	GO:0016042: lipid catabolic process	2.75E-02
154	GO:0048544: recognition of pollen	2.76E-02
155	GO:0006814: sodium ion transport	2.76E-02
156	GO:0006629: lipid metabolic process	2.85E-02
157	GO:0009556: microsporogenesis	2.90E-02
158	GO:0008152: metabolic process	3.21E-02
159	GO:1901657: glycosyl compound metabolic process	3.33E-02
160	GO:0016126: sterol biosynthetic process	3.95E-02
161	GO:0009627: systemic acquired resistance	4.27E-02
162	GO:0048481: plant ovule development	4.77E-02
163	GO:0008219: cell death	4.77E-02
164	GO:0009832: plant-type cell wall biogenesis	4.94E-02
165	GO:0000160: phosphorelay signal transduction system	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0005363: maltose transmembrane transporter activity	0.00E+00
2	GO:0016631: enoyl-[acyl-carrier-protein] reductase activity	0.00E+00
3	GO:0090711: FMN hydrolase activity	0.00E+00
4	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
5	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
6	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
7	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
8	GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity	0.00E+00
9	GO:0005201: extracellular matrix structural constituent	0.00E+00
10	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
11	GO:0019843: rRNA binding	1.09E-06
12	GO:0016630: protochlorophyllide reductase activity	4.22E-06
13	GO:0016851: magnesium chelatase activity	3.35E-05
14	GO:0044183: protein binding involved in protein folding	3.66E-05
15	GO:0045430: chalcone isomerase activity	6.01E-05
16	GO:0005528: FK506 binding	1.13E-04
17	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.02E-04
18	GO:0004856: xylulokinase activity	3.04E-04
19	GO:0004645: phosphorylase activity	3.04E-04
20	GO:0009374: biotin binding	3.04E-04
21	GO:0004853: uroporphyrinogen decarboxylase activity	3.04E-04
22	GO:0042586: peptide deformylase activity	3.04E-04
23	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.04E-04
24	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	3.04E-04
25	GO:0050139: nicotinate-N-glucosyltransferase activity	3.04E-04
26	GO:0008184: glycogen phosphorylase activity	3.04E-04
27	GO:0051082: unfolded protein binding	6.58E-04
28	GO:0008934: inositol monophosphate 1-phosphatase activity	6.66E-04
29	GO:0052833: inositol monophosphate 4-phosphatase activity	6.66E-04
30	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	6.66E-04
31	GO:0004614: phosphoglucomutase activity	6.66E-04
32	GO:0008967: phosphoglycolate phosphatase activity	6.66E-04
33	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	6.66E-04
34	GO:0004618: phosphoglycerate kinase activity	6.66E-04
35	GO:0003839: gamma-glutamylcyclotransferase activity	6.66E-04
36	GO:0052832: inositol monophosphate 3-phosphatase activity	6.66E-04
37	GO:0004817: cysteine-tRNA ligase activity	6.66E-04
38	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	6.66E-04
39	GO:0002161: aminoacyl-tRNA editing activity	1.08E-03
40	GO:0005504: fatty acid binding	1.08E-03
41	GO:0090729: toxin activity	1.08E-03
42	GO:0004148: dihydrolipoyl dehydrogenase activity	1.08E-03
43	GO:0050833: pyruvate transmembrane transporter activity	1.08E-03
44	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.08E-03
45	GO:0071917: triose-phosphate transmembrane transporter activity	1.08E-03
46	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.08E-03
47	GO:0016149: translation release factor activity, codon specific	1.55E-03
48	GO:0004550: nucleoside diphosphate kinase activity	1.55E-03
49	GO:0043023: ribosomal large subunit binding	1.55E-03
50	GO:0008508: bile acid:sodium symporter activity	1.55E-03
51	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	1.55E-03
52	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.55E-03
53	GO:0008878: glucose-1-phosphate adenylyltransferase activity	2.07E-03
54	GO:0015120: phosphoglycerate transmembrane transporter activity	2.07E-03
55	GO:0004659: prenyltransferase activity	2.07E-03
56	GO:0016279: protein-lysine N-methyltransferase activity	2.07E-03
57	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.07E-03
58	GO:0004812: aminoacyl-tRNA ligase activity	2.47E-03
59	GO:0003959: NADPH dehydrogenase activity	2.65E-03
60	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.65E-03
61	GO:0003989: acetyl-CoA carboxylase activity	2.65E-03
62	GO:0004629: phospholipase C activity	3.27E-03
63	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	3.27E-03
64	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.27E-03
65	GO:1990714: hydroxyproline O-galactosyltransferase activity	3.27E-03
66	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.93E-03
67	GO:0004747: ribokinase activity	3.93E-03
68	GO:0004435: phosphatidylinositol phospholipase C activity	3.93E-03
69	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	3.93E-03
70	GO:0016791: phosphatase activity	4.30E-03
71	GO:0008237: metallopeptidase activity	4.56E-03
72	GO:0004034: aldose 1-epimerase activity	5.39E-03
73	GO:0008865: fructokinase activity	5.39E-03
74	GO:0008889: glycerophosphodiester phosphodiesterase activity	7.01E-03
75	GO:0003747: translation release factor activity	7.01E-03
76	GO:0015238: drug transmembrane transporter activity	7.03E-03
77	GO:0015297: antiporter activity	7.17E-03
78	GO:0004222: metalloendopeptidase activity	7.38E-03
79	GO:0003735: structural constituent of ribosome	7.47E-03
80	GO:0005384: manganese ion transmembrane transporter activity	7.87E-03
81	GO:0047372: acylglycerol lipase activity	9.71E-03
82	GO:0000049: tRNA binding	1.07E-02
83	GO:0004089: carbonate dehydratase activity	1.17E-02
84	GO:0015095: magnesium ion transmembrane transporter activity	1.17E-02
85	GO:0031072: heat shock protein binding	1.17E-02
86	GO:0005525: GTP binding	1.17E-02
87	GO:0043621: protein self-association	1.19E-02
88	GO:0008083: growth factor activity	1.27E-02
89	GO:0008266: poly(U) RNA binding	1.27E-02
90	GO:0003774: motor activity	1.27E-02
91	GO:0000287: magnesium ion binding	1.30E-02
92	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.49E-02
93	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.49E-02
94	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.49E-02
95	GO:0031409: pigment binding	1.49E-02
96	GO:0051536: iron-sulfur cluster binding	1.60E-02
97	GO:0005385: zinc ion transmembrane transporter activity	1.60E-02
98	GO:0008324: cation transmembrane transporter activity	1.72E-02
99	GO:0004176: ATP-dependent peptidase activity	1.84E-02
100	GO:0033612: receptor serine/threonine kinase binding	1.84E-02
101	GO:0008810: cellulase activity	2.09E-02
102	GO:0005102: receptor binding	2.35E-02
103	GO:0001085: RNA polymerase II transcription factor binding	2.62E-02
104	GO:0016491: oxidoreductase activity	2.68E-02
105	GO:0016853: isomerase activity	2.76E-02
106	GO:0003924: GTPase activity	2.85E-02
107	GO:0004252: serine-type endopeptidase activity	2.94E-02
108	GO:0005507: copper ion binding	2.95E-02
109	GO:0048038: quinone binding	3.04E-02
110	GO:0000156: phosphorelay response regulator activity	3.33E-02
111	GO:0051015: actin filament binding	3.33E-02
112	GO:0016597: amino acid binding	3.79E-02
113	GO:0016168: chlorophyll binding	4.11E-02
114	GO:0102483: scopolin beta-glucosidase activity	4.44E-02
115	GO:0008236: serine-type peptidase activity	4.60E-02
116	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0005835: fatty acid synthase complex	0.00E+00
2	GO:0009571: proplastid stroma	0.00E+00
3	GO:0010170: glucose-1-phosphate adenylyltransferase complex	0.00E+00
4	GO:0009507: chloroplast	1.34E-39
5	GO:0009570: chloroplast stroma	3.50E-34
6	GO:0009941: chloroplast envelope	7.11E-22
7	GO:0009535: chloroplast thylakoid membrane	3.03E-16
8	GO:0009579: thylakoid	3.48E-16
9	GO:0009534: chloroplast thylakoid	3.81E-16
10	GO:0009543: chloroplast thylakoid lumen	5.98E-08
11	GO:0031969: chloroplast membrane	2.17E-07
12	GO:0010007: magnesium chelatase complex	1.50E-05
13	GO:0031977: thylakoid lumen	1.71E-05
14	GO:0009547: plastid ribosome	3.04E-04
15	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.57E-04
16	GO:0010319: stromule	5.53E-04
17	GO:0009706: chloroplast inner membrane	6.58E-04
18	GO:0009317: acetyl-CoA carboxylase complex	1.08E-03
19	GO:0005960: glycine cleavage complex	1.55E-03
20	GO:0005840: ribosome	1.85E-03
21	GO:0009536: plastid	2.62E-03
22	GO:0009840: chloroplastic endopeptidase Clp complex	3.93E-03
23	GO:0009707: chloroplast outer membrane	6.69E-03
24	GO:0005763: mitochondrial small ribosomal subunit	7.01E-03
25	GO:0016459: myosin complex	8.77E-03
26	GO:0090404: pollen tube tip	9.71E-03
27	GO:0000311: plastid large ribosomal subunit	1.07E-02
28	GO:0032040: small-subunit processome	1.07E-02
29	GO:0048046: apoplast	1.08E-02
30	GO:0046658: anchored component of plasma membrane	1.09E-02
31	GO:0009508: plastid chromosome	1.17E-02
32	GO:0030095: chloroplast photosystem II	1.27E-02
33	GO:0016020: membrane	1.33E-02
34	GO:0030076: light-harvesting complex	1.38E-02
35	GO:0009654: photosystem II oxygen evolving complex	1.72E-02
36	GO:0015935: small ribosomal subunit	1.84E-02
37	GO:0009532: plastid stroma	1.84E-02
38	GO:0015629: actin cytoskeleton	2.09E-02
39	GO:0019898: extrinsic component of membrane	2.90E-02
40	GO:0009295: nucleoid	3.64E-02
41	GO:0005615: extracellular space	4.08E-02
42	GO:0005667: transcription factor complex	4.27E-02