co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G04230

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009583: detection of light stimulus	0.00E+00
2	GO:0045176: apical protein localization	0.00E+00
3	GO:0071000: response to magnetism	0.00E+00
4	GO:0000372: Group I intron splicing	0.00E+00
5	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
6	GO:0043972: histone H3-K23 acetylation	0.00E+00
7	GO:0080127: fruit septum development	0.00E+00
8	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
9	GO:0033528: S-methylmethionine cycle	0.00E+00
10	GO:0043457: regulation of cellular respiration	0.00E+00
11	GO:0044154: histone H3-K14 acetylation	0.00E+00
12	GO:0000373: Group II intron splicing	5.79E-05
13	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	5.18E-04
14	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	5.18E-04
15	GO:0043971: histone H3-K18 acetylation	5.18E-04
16	GO:0000012: single strand break repair	5.18E-04
17	GO:1902025: nitrate import	5.18E-04
18	GO:0019478: D-amino acid catabolic process	5.18E-04
19	GO:0072387: flavin adenine dinucleotide metabolic process	5.18E-04
20	GO:0043087: regulation of GTPase activity	5.18E-04
21	GO:0043609: regulation of carbon utilization	5.18E-04
22	GO:0006436: tryptophanyl-tRNA aminoacylation	5.18E-04
23	GO:0090548: response to nitrate starvation	5.18E-04
24	GO:0000066: mitochondrial ornithine transport	5.18E-04
25	GO:0034757: negative regulation of iron ion transport	5.18E-04
26	GO:1901529: positive regulation of anion channel activity	1.11E-03
27	GO:0010617: circadian regulation of calcium ion oscillation	1.11E-03
28	GO:0010271: regulation of chlorophyll catabolic process	1.11E-03
29	GO:0006898: receptor-mediated endocytosis	1.11E-03
30	GO:0006435: threonyl-tRNA aminoacylation	1.11E-03
31	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	1.11E-03
32	GO:0099402: plant organ development	1.11E-03
33	GO:0001736: establishment of planar polarity	1.11E-03
34	GO:0010343: singlet oxygen-mediated programmed cell death	1.11E-03
35	GO:0010582: floral meristem determinacy	1.79E-03
36	GO:0006000: fructose metabolic process	1.82E-03
37	GO:0080117: secondary growth	1.82E-03
38	GO:1901672: positive regulation of systemic acquired resistance	1.82E-03
39	GO:0042780: tRNA 3'-end processing	1.82E-03
40	GO:0045493: xylan catabolic process	1.82E-03
41	GO:0030029: actin filament-based process	1.82E-03
42	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	1.82E-03
43	GO:0031022: nuclear migration along microfilament	1.82E-03
44	GO:1902448: positive regulation of shade avoidance	1.82E-03
45	GO:0006094: gluconeogenesis	2.03E-03
46	GO:0010411: xyloglucan metabolic process	2.13E-03
47	GO:0010540: basipetal auxin transport	2.29E-03
48	GO:0044211: CTP salvage	2.64E-03
49	GO:0010306: rhamnogalacturonan II biosynthetic process	2.64E-03
50	GO:1901332: negative regulation of lateral root development	2.64E-03
51	GO:2000904: regulation of starch metabolic process	2.64E-03
52	GO:0051513: regulation of monopolar cell growth	2.64E-03
53	GO:0009102: biotin biosynthetic process	2.64E-03
54	GO:0051639: actin filament network formation	2.64E-03
55	GO:0034059: response to anoxia	2.64E-03
56	GO:0010239: chloroplast mRNA processing	2.64E-03
57	GO:0005992: trehalose biosynthetic process	3.18E-03
58	GO:0015846: polyamine transport	3.56E-03
59	GO:0006021: inositol biosynthetic process	3.56E-03
60	GO:0044206: UMP salvage	3.56E-03
61	GO:1902347: response to strigolactone	3.56E-03
62	GO:0009956: radial pattern formation	3.56E-03
63	GO:0051764: actin crosslink formation	3.56E-03
64	GO:0009793: embryo development ending in seed dormancy	4.29E-03
65	GO:0080110: sporopollenin biosynthetic process	4.57E-03
66	GO:0009696: salicylic acid metabolic process	4.57E-03
67	GO:0010117: photoprotection	4.57E-03
68	GO:0046283: anthocyanin-containing compound metabolic process	4.57E-03
69	GO:0009904: chloroplast accumulation movement	4.57E-03
70	GO:0010158: abaxial cell fate specification	4.57E-03
71	GO:0006465: signal peptide processing	4.57E-03
72	GO:0009451: RNA modification	5.25E-03
73	GO:0016554: cytidine to uridine editing	5.66E-03
74	GO:0060918: auxin transport	5.66E-03
75	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	5.66E-03
76	GO:0048831: regulation of shoot system development	5.66E-03
77	GO:1901371: regulation of leaf morphogenesis	5.66E-03
78	GO:0003006: developmental process involved in reproduction	5.66E-03
79	GO:0006206: pyrimidine nucleobase metabolic process	5.66E-03
80	GO:0048827: phyllome development	5.66E-03
81	GO:0009958: positive gravitropism	6.36E-03
82	GO:0048868: pollen tube development	6.36E-03
83	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	6.83E-03
84	GO:0048509: regulation of meristem development	6.83E-03
85	GO:0009903: chloroplast avoidance movement	6.83E-03
86	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	6.83E-03
87	GO:0010310: regulation of hydrogen peroxide metabolic process	6.83E-03
88	GO:0010050: vegetative phase change	8.09E-03
89	GO:0010098: suspensor development	8.09E-03
90	GO:0051510: regulation of unidimensional cell growth	8.09E-03
91	GO:0009610: response to symbiotic fungus	8.09E-03
92	GO:0006955: immune response	8.09E-03
93	GO:0007264: small GTPase mediated signal transduction	8.41E-03
94	GO:0009850: auxin metabolic process	9.42E-03
95	GO:0006353: DNA-templated transcription, termination	9.42E-03
96	GO:0070413: trehalose metabolism in response to stress	9.42E-03
97	GO:0032508: DNA duplex unwinding	9.42E-03
98	GO:0045010: actin nucleation	9.42E-03
99	GO:0000105: histidine biosynthetic process	9.42E-03
100	GO:0048564: photosystem I assembly	9.42E-03
101	GO:0009639: response to red or far red light	9.56E-03
102	GO:0009658: chloroplast organization	9.88E-03
103	GO:0009827: plant-type cell wall modification	1.08E-02
104	GO:0009657: plastid organization	1.08E-02
105	GO:0032544: plastid translation	1.08E-02
106	GO:0044030: regulation of DNA methylation	1.08E-02
107	GO:0006002: fructose 6-phosphate metabolic process	1.08E-02
108	GO:0071482: cellular response to light stimulus	1.08E-02
109	GO:0022900: electron transport chain	1.08E-02
110	GO:0006098: pentose-phosphate shunt	1.23E-02
111	GO:0090305: nucleic acid phosphodiester bond hydrolysis	1.23E-02
112	GO:0046916: cellular transition metal ion homeostasis	1.23E-02
113	GO:0048507: meristem development	1.23E-02
114	GO:0010018: far-red light signaling pathway	1.38E-02
115	GO:0009086: methionine biosynthetic process	1.38E-02
116	GO:1900865: chloroplast RNA modification	1.38E-02
117	GO:0016571: histone methylation	1.38E-02
118	GO:0008202: steroid metabolic process	1.38E-02
119	GO:0016573: histone acetylation	1.38E-02
120	GO:1900426: positive regulation of defense response to bacterium	1.38E-02
121	GO:0009638: phototropism	1.38E-02
122	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.44E-02
123	GO:0009817: defense response to fungus, incompatible interaction	1.50E-02
124	GO:0030244: cellulose biosynthetic process	1.50E-02
125	GO:0006535: cysteine biosynthetic process from serine	1.55E-02
126	GO:0048829: root cap development	1.55E-02
127	GO:0006259: DNA metabolic process	1.55E-02
128	GO:0010192: mucilage biosynthetic process	1.55E-02
129	GO:0000160: phosphorelay signal transduction system	1.57E-02
130	GO:0006265: DNA topological change	1.71E-02
131	GO:0006415: translational termination	1.71E-02
132	GO:0048765: root hair cell differentiation	1.71E-02
133	GO:0007568: aging	1.73E-02
134	GO:0045037: protein import into chloroplast stroma	1.89E-02
135	GO:0006790: sulfur compound metabolic process	1.89E-02
136	GO:0009416: response to light stimulus	1.98E-02
137	GO:0040008: regulation of growth	1.98E-02
138	GO:0009785: blue light signaling pathway	2.07E-02
139	GO:0010229: inflorescence development	2.07E-02
140	GO:0030036: actin cytoskeleton organization	2.07E-02
141	GO:0010075: regulation of meristem growth	2.07E-02
142	GO:0010020: chloroplast fission	2.25E-02
143	GO:0009933: meristem structural organization	2.25E-02
144	GO:0009266: response to temperature stimulus	2.25E-02
145	GO:0006302: double-strand break repair	2.25E-02
146	GO:0048467: gynoecium development	2.25E-02
147	GO:0009825: multidimensional cell growth	2.44E-02
148	GO:0080188: RNA-directed DNA methylation	2.44E-02
149	GO:0046854: phosphatidylinositol phosphorylation	2.44E-02
150	GO:0010114: response to red light	2.45E-02
151	GO:0009926: auxin polar transport	2.45E-02
152	GO:0042546: cell wall biogenesis	2.55E-02
153	GO:0042753: positive regulation of circadian rhythm	2.64E-02
154	GO:0006863: purine nucleobase transport	2.64E-02
155	GO:0009833: plant-type primary cell wall biogenesis	2.64E-02
156	GO:0009636: response to toxic substance	2.76E-02
157	GO:0009965: leaf morphogenesis	2.76E-02
158	GO:0030150: protein import into mitochondrial matrix	2.84E-02
159	GO:0006338: chromatin remodeling	2.84E-02
160	GO:0051017: actin filament bundle assembly	2.84E-02
161	GO:0006289: nucleotide-excision repair	2.84E-02
162	GO:2000377: regulation of reactive oxygen species metabolic process	2.84E-02
163	GO:0019344: cysteine biosynthetic process	2.84E-02
164	GO:0006418: tRNA aminoacylation for protein translation	3.05E-02
165	GO:0010073: meristem maintenance	3.05E-02
166	GO:0009269: response to desiccation	3.26E-02
167	GO:0003333: amino acid transmembrane transport	3.26E-02
168	GO:0016998: cell wall macromolecule catabolic process	3.26E-02
169	GO:0009736: cytokinin-activated signaling pathway	3.31E-02
170	GO:0016226: iron-sulfur cluster assembly	3.48E-02
171	GO:0035428: hexose transmembrane transport	3.48E-02
172	GO:0071215: cellular response to abscisic acid stimulus	3.70E-02
173	GO:0009686: gibberellin biosynthetic process	3.70E-02
174	GO:0048443: stamen development	3.93E-02
175	GO:0006284: base-excision repair	3.93E-02
176	GO:0010584: pollen exine formation	3.93E-02
177	GO:0048316: seed development	4.03E-02
178	GO:0009734: auxin-activated signaling pathway	4.04E-02
179	GO:0070417: cellular response to cold	4.16E-02
180	GO:0016117: carotenoid biosynthetic process	4.16E-02
181	GO:0010087: phloem or xylem histogenesis	4.40E-02
182	GO:0010118: stomatal movement	4.40E-02
183	GO:0045489: pectin biosynthetic process	4.64E-02
184	GO:0010305: leaf vascular tissue pattern formation	4.64E-02
185	GO:0046323: glucose import	4.64E-02
186	GO:0048544: recognition of pollen	4.88E-02
187	GO:0007018: microtubule-based movement	4.88E-02
188	GO:0042752: regulation of circadian rhythm	4.88E-02
189	GO:0007059: chromosome segregation	4.88E-02
190	GO:0009646: response to absence of light	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
2	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
3	GO:0019808: polyamine binding	0.00E+00
4	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
5	GO:0008710: 8-amino-7-oxononanoate synthase activity	0.00E+00
6	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
7	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
8	GO:0004401: histidinol-phosphatase activity	0.00E+00
9	GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity	0.00E+00
10	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
11	GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity	0.00E+00
12	GO:0042834: peptidoglycan binding	5.18E-04
13	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	5.18E-04
14	GO:0005290: L-histidine transmembrane transporter activity	5.18E-04
15	GO:0004612: phosphoenolpyruvate carboxykinase (ATP) activity	5.18E-04
16	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	5.18E-04
17	GO:0004830: tryptophan-tRNA ligase activity	5.18E-04
18	GO:0010347: L-galactose-1-phosphate phosphatase activity	5.18E-04
19	GO:0005227: calcium activated cation channel activity	5.18E-04
20	GO:0008805: carbon-monoxide oxygenase activity	1.11E-03
21	GO:0008934: inositol monophosphate 1-phosphatase activity	1.11E-03
22	GO:0052833: inositol monophosphate 4-phosphatase activity	1.11E-03
23	GO:0004829: threonine-tRNA ligase activity	1.11E-03
24	GO:0000064: L-ornithine transmembrane transporter activity	1.11E-03
25	GO:0050736: O-malonyltransferase activity	1.11E-03
26	GO:0009884: cytokinin receptor activity	1.11E-03
27	GO:0050017: L-3-cyanoalanine synthase activity	1.11E-03
28	GO:0008898: S-adenosylmethionine-homocysteine S-methyltransferase activity	1.11E-03
29	GO:0004047: aminomethyltransferase activity	1.11E-03
30	GO:0052832: inositol monophosphate 3-phosphatase activity	1.11E-03
31	GO:0004805: trehalose-phosphatase activity	1.35E-03
32	GO:0042781: 3'-tRNA processing endoribonuclease activity	1.82E-03
33	GO:0032549: ribonucleoside binding	1.82E-03
34	GO:0004148: dihydrolipoyl dehydrogenase activity	1.82E-03
35	GO:0016805: dipeptidase activity	1.82E-03
36	GO:0005034: osmosensor activity	1.82E-03
37	GO:0016707: gibberellin 3-beta-dioxygenase activity	1.82E-03
38	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	1.82E-03
39	GO:0015181: arginine transmembrane transporter activity	2.64E-03
40	GO:0017172: cysteine dioxygenase activity	2.64E-03
41	GO:0009882: blue light photoreceptor activity	2.64E-03
42	GO:0080031: methyl salicylate esterase activity	2.64E-03
43	GO:0015189: L-lysine transmembrane transporter activity	2.64E-03
44	GO:0000254: C-4 methylsterol oxidase activity	2.64E-03
45	GO:0003697: single-stranded DNA binding	3.29E-03
46	GO:0010328: auxin influx transmembrane transporter activity	3.56E-03
47	GO:0070628: proteasome binding	3.56E-03
48	GO:0010385: double-stranded methylated DNA binding	3.56E-03
49	GO:0009044: xylan 1,4-beta-xylosidase activity	3.56E-03
50	GO:0042277: peptide binding	3.56E-03
51	GO:0046556: alpha-L-arabinofuranosidase activity	3.56E-03
52	GO:0004845: uracil phosphoribosyltransferase activity	3.56E-03
53	GO:0010011: auxin binding	3.56E-03
54	GO:0005471: ATP:ADP antiporter activity	4.57E-03
55	GO:0008725: DNA-3-methyladenine glycosylase activity	4.57E-03
56	GO:0043621: protein self-association	5.04E-03
57	GO:0031593: polyubiquitin binding	5.66E-03
58	GO:2001070: starch binding	5.66E-03
59	GO:0080030: methyl indole-3-acetate esterase activity	5.66E-03
60	GO:0004332: fructose-bisphosphate aldolase activity	5.66E-03
61	GO:0003723: RNA binding	6.67E-03
62	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	6.83E-03
63	GO:0004849: uridine kinase activity	6.83E-03
64	GO:0004656: procollagen-proline 4-dioxygenase activity	6.83E-03
65	GO:0019900: kinase binding	6.83E-03
66	GO:0004124: cysteine synthase activity	6.83E-03
67	GO:0019901: protein kinase binding	7.35E-03
68	GO:0016762: xyloglucan:xyloglucosyl transferase activity	7.87E-03
69	GO:0019899: enzyme binding	8.09E-03
70	GO:0004518: nuclease activity	8.41E-03
71	GO:0004519: endonuclease activity	8.51E-03
72	GO:0046914: transition metal ion binding	1.08E-02
73	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	1.08E-02
74	GO:0008142: oxysterol binding	1.08E-02
75	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.12E-02
76	GO:0071949: FAD binding	1.23E-02
77	GO:0003747: translation release factor activity	1.23E-02
78	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.35E-02
79	GO:0004673: protein histidine kinase activity	1.55E-02
80	GO:0015020: glucuronosyltransferase activity	1.55E-02
81	GO:0005096: GTPase activator activity	1.57E-02
82	GO:0004222: metalloendopeptidase activity	1.65E-02
83	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.71E-02
84	GO:0008327: methyl-CpG binding	1.71E-02
85	GO:0001054: RNA polymerase I activity	1.71E-02
86	GO:0005525: GTP binding	1.72E-02
87	GO:0015266: protein channel activity	2.07E-02
88	GO:0000155: phosphorelay sensor kinase activity	2.07E-02
89	GO:0004672: protein kinase activity	2.15E-02
90	GO:0003924: GTPase activity	2.45E-02
91	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	2.64E-02
92	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	2.64E-02
93	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	2.64E-02
94	GO:0035091: phosphatidylinositol binding	2.66E-02
95	GO:0008134: transcription factor binding	2.84E-02
96	GO:0031418: L-ascorbic acid binding	2.84E-02
97	GO:0004857: enzyme inhibitor activity	2.84E-02
98	GO:0042802: identical protein binding	2.84E-02
99	GO:0043130: ubiquitin binding	2.84E-02
100	GO:0005345: purine nucleobase transmembrane transporter activity	3.05E-02
101	GO:0043424: protein histidine kinase binding	3.05E-02
102	GO:0003690: double-stranded DNA binding	3.42E-02
103	GO:0016760: cellulose synthase (UDP-forming) activity	3.70E-02
104	GO:0004812: aminoacyl-tRNA ligase activity	4.16E-02
105	GO:0046872: metal ion binding	4.16E-02
106	GO:0004402: histone acetyltransferase activity	4.40E-02
107	GO:0004527: exonuclease activity	4.64E-02
108	GO:0008536: Ran GTPase binding	4.64E-02
109	GO:0005355: glucose transmembrane transporter activity	4.88E-02
110	GO:0050662: coenzyme binding	4.88E-02
111	GO:0010181: FMN binding	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0000408: EKC/KEOPS complex	0.00E+00
2	GO:0042597: periplasmic space	0.00E+00
3	GO:0009537: proplastid	0.00E+00
4	GO:0035452: extrinsic component of plastid membrane	0.00E+00
5	GO:0009507: chloroplast	4.25E-05
6	GO:0010370: perinucleolar chromocenter	5.18E-04
7	GO:0009513: etioplast	1.11E-03
8	GO:0009509: chromoplast	1.82E-03
9	GO:0016605: PML body	1.82E-03
10	GO:0032432: actin filament bundle	2.64E-03
11	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	3.56E-03
12	GO:0031209: SCAR complex	5.66E-03
13	GO:0009986: cell surface	8.09E-03
14	GO:0031982: vesicle	9.42E-03
15	GO:0031305: integral component of mitochondrial inner membrane	9.42E-03
16	GO:0009501: amyloplast	9.42E-03
17	GO:0030529: intracellular ribonucleoprotein complex	1.14E-02
18	GO:0005720: nuclear heterochromatin	1.23E-02
19	GO:0005736: DNA-directed RNA polymerase I complex	1.23E-02
20	GO:0016604: nuclear body	1.38E-02
21	GO:0009707: chloroplast outer membrane	1.50E-02
22	GO:0005884: actin filament	1.71E-02
23	GO:0009574: preprophase band	2.07E-02
24	GO:0016602: CCAAT-binding factor complex	2.07E-02
25	GO:0005578: proteinaceous extracellular matrix	2.07E-02
26	GO:0009532: plastid stroma	3.26E-02
27	GO:0009505: plant-type cell wall	3.85E-02
28	GO:0005744: mitochondrial inner membrane presequence translocase complex	3.93E-02
29	GO:0005871: kinesin complex	4.16E-02
30	GO:0005770: late endosome	4.64E-02