co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G03995

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070125: mitochondrial translational elongation	0.00E+00
2	GO:0045014: negative regulation of transcription by glucose	0.00E+00
3	GO:0045176: apical protein localization	0.00E+00
4	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
5	GO:0080127: fruit septum development	0.00E+00
6	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
7	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
8	GO:0046486: glycerolipid metabolic process	0.00E+00
9	GO:0006907: pinocytosis	0.00E+00
10	GO:0046620: regulation of organ growth	1.53E-04
11	GO:0009926: auxin polar transport	1.83E-04
12	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.69E-04
13	GO:0000373: Group II intron splicing	2.70E-04
14	GO:0009733: response to auxin	3.51E-04
15	GO:0009734: auxin-activated signaling pathway	6.21E-04
16	GO:0010583: response to cyclopentenone	8.05E-04
17	GO:0051013: microtubule severing	1.04E-03
18	GO:0034757: negative regulation of iron ion transport	1.04E-03
19	GO:0010726: positive regulation of hydrogen peroxide metabolic process	1.04E-03
20	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	1.04E-03
21	GO:0006438: valyl-tRNA aminoacylation	1.04E-03
22	GO:0010070: zygote asymmetric cell division	1.04E-03
23	GO:0019478: D-amino acid catabolic process	1.04E-03
24	GO:0043686: co-translational protein modification	1.04E-03
25	GO:0043087: regulation of GTPase activity	1.04E-03
26	GO:0000105: histidine biosynthetic process	1.90E-03
27	GO:0040008: regulation of growth	2.03E-03
28	GO:0009686: gibberellin biosynthetic process	2.12E-03
29	GO:2000123: positive regulation of stomatal complex development	2.28E-03
30	GO:0010024: phytochromobilin biosynthetic process	2.28E-03
31	GO:0043039: tRNA aminoacylation	2.28E-03
32	GO:0010069: zygote asymmetric cytokinesis in embryo sac	2.28E-03
33	GO:0061062: regulation of nematode larval development	2.28E-03
34	GO:0010271: regulation of chlorophyll catabolic process	2.28E-03
35	GO:0006650: glycerophospholipid metabolic process	2.28E-03
36	GO:0001736: establishment of planar polarity	2.28E-03
37	GO:0080009: mRNA methylation	2.28E-03
38	GO:0009786: regulation of asymmetric cell division	2.28E-03
39	GO:0031648: protein destabilization	2.28E-03
40	GO:0007186: G-protein coupled receptor signaling pathway	2.32E-03
41	GO:0009741: response to brassinosteroid	3.20E-03
42	GO:0009416: response to light stimulus	3.20E-03
43	GO:0009958: positive gravitropism	3.20E-03
44	GO:0071398: cellular response to fatty acid	3.79E-03
45	GO:0030029: actin filament-based process	3.79E-03
46	GO:0048575: short-day photoperiodism, flowering	3.79E-03
47	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	3.79E-03
48	GO:0045910: negative regulation of DNA recombination	3.79E-03
49	GO:0090506: axillary shoot meristem initiation	3.79E-03
50	GO:0080117: secondary growth	3.79E-03
51	GO:0046168: glycerol-3-phosphate catabolic process	3.79E-03
52	GO:0006518: peptide metabolic process	3.79E-03
53	GO:0042780: tRNA 3'-end processing	3.79E-03
54	GO:0006782: protoporphyrinogen IX biosynthetic process	3.89E-03
55	GO:0048829: root cap development	3.89E-03
56	GO:0010582: floral meristem determinacy	5.18E-03
57	GO:0009658: chloroplast organization	5.33E-03
58	GO:0010371: regulation of gibberellin biosynthetic process	5.53E-03
59	GO:0051513: regulation of monopolar cell growth	5.53E-03
60	GO:0051639: actin filament network formation	5.53E-03
61	GO:0034059: response to anoxia	5.53E-03
62	GO:0010239: chloroplast mRNA processing	5.53E-03
63	GO:0044211: CTP salvage	5.53E-03
64	GO:0007276: gamete generation	5.53E-03
65	GO:0009800: cinnamic acid biosynthetic process	5.53E-03
66	GO:0006072: glycerol-3-phosphate metabolic process	5.53E-03
67	GO:0006424: glutamyl-tRNA aminoacylation	5.53E-03
68	GO:2000904: regulation of starch metabolic process	5.53E-03
69	GO:1990019: protein storage vacuole organization	5.53E-03
70	GO:0010321: regulation of vegetative phase change	5.53E-03
71	GO:0045017: glycerolipid biosynthetic process	5.53E-03
72	GO:0009887: animal organ morphogenesis	6.68E-03
73	GO:0010540: basipetal auxin transport	6.68E-03
74	GO:0051764: actin crosslink formation	7.50E-03
75	GO:2000038: regulation of stomatal complex development	7.50E-03
76	GO:0006021: inositol biosynthetic process	7.50E-03
77	GO:0008295: spermidine biosynthetic process	7.50E-03
78	GO:0044206: UMP salvage	7.50E-03
79	GO:0009956: radial pattern formation	7.50E-03
80	GO:0009755: hormone-mediated signaling pathway	7.50E-03
81	GO:0009825: multidimensional cell growth	7.51E-03
82	GO:0006863: purine nucleobase transport	8.39E-03
83	GO:0009793: embryo development ending in seed dormancy	9.11E-03
84	GO:0051017: actin filament bundle assembly	9.33E-03
85	GO:0009107: lipoate biosynthetic process	9.69E-03
86	GO:0016123: xanthophyll biosynthetic process	9.69E-03
87	GO:0010438: cellular response to sulfur starvation	9.69E-03
88	GO:0010158: abaxial cell fate specification	9.69E-03
89	GO:0010375: stomatal complex patterning	9.69E-03
90	GO:0080110: sporopollenin biosynthetic process	9.69E-03
91	GO:0016131: brassinosteroid metabolic process	9.69E-03
92	GO:0009696: salicylic acid metabolic process	9.69E-03
93	GO:0048497: maintenance of floral organ identity	9.69E-03
94	GO:0045487: gibberellin catabolic process	9.69E-03
95	GO:0031365: N-terminal protein amino acid modification	9.69E-03
96	GO:0000160: phosphorelay signal transduction system	1.02E-02
97	GO:0045892: negative regulation of transcription, DNA-templated	1.20E-02
98	GO:0048827: phyllome development	1.21E-02
99	GO:0009913: epidermal cell differentiation	1.21E-02
100	GO:0010358: leaf shaping	1.21E-02
101	GO:0016554: cytidine to uridine editing	1.21E-02
102	GO:1902456: regulation of stomatal opening	1.21E-02
103	GO:0048831: regulation of shoot system development	1.21E-02
104	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	1.21E-02
105	GO:0003006: developmental process involved in reproduction	1.21E-02
106	GO:0006559: L-phenylalanine catabolic process	1.21E-02
107	GO:0006206: pyrimidine nucleobase metabolic process	1.21E-02
108	GO:0010942: positive regulation of cell death	1.21E-02
109	GO:0006865: amino acid transport	1.23E-02
110	GO:0009867: jasmonic acid mediated signaling pathway	1.30E-02
111	GO:0071215: cellular response to abscisic acid stimulus	1.36E-02
112	GO:0010019: chloroplast-nucleus signaling pathway	1.46E-02
113	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	1.46E-02
114	GO:0009942: longitudinal axis specification	1.46E-02
115	GO:0048509: regulation of meristem development	1.46E-02
116	GO:0030488: tRNA methylation	1.46E-02
117	GO:0031930: mitochondria-nucleus signaling pathway	1.46E-02
118	GO:0042127: regulation of cell proliferation	1.49E-02
119	GO:0030001: metal ion transport	1.54E-02
120	GO:0009826: unidimensional cell growth	1.56E-02
121	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	1.74E-02
122	GO:0009610: response to symbiotic fungus	1.74E-02
123	GO:0006955: immune response	1.74E-02
124	GO:1900056: negative regulation of leaf senescence	1.74E-02
125	GO:0010050: vegetative phase change	1.74E-02
126	GO:0010098: suspensor development	1.74E-02
127	GO:0010444: guard mother cell differentiation	1.74E-02
128	GO:0000082: G1/S transition of mitotic cell cycle	1.74E-02
129	GO:0015693: magnesium ion transport	1.74E-02
130	GO:0010087: phloem or xylem histogenesis	1.75E-02
131	GO:0010268: brassinosteroid homeostasis	1.88E-02
132	GO:0010305: leaf vascular tissue pattern formation	1.88E-02
133	GO:0009231: riboflavin biosynthetic process	2.03E-02
134	GO:0006402: mRNA catabolic process	2.03E-02
135	GO:0010439: regulation of glucosinolate biosynthetic process	2.03E-02
136	GO:0009819: drought recovery	2.03E-02
137	GO:0009850: auxin metabolic process	2.03E-02
138	GO:0009690: cytokinin metabolic process	2.03E-02
139	GO:0009704: de-etiolation	2.03E-02
140	GO:0042255: ribosome assembly	2.03E-02
141	GO:0006353: DNA-templated transcription, termination	2.03E-02
142	GO:2000070: regulation of response to water deprivation	2.03E-02
143	GO:0010492: maintenance of shoot apical meristem identity	2.03E-02
144	GO:0007018: microtubule-based movement	2.03E-02
145	GO:0048825: cotyledon development	2.18E-02
146	GO:0006468: protein phosphorylation	2.26E-02
147	GO:0071554: cell wall organization or biogenesis	2.33E-02
148	GO:0071482: cellular response to light stimulus	2.34E-02
149	GO:0010497: plasmodesmata-mediated intercellular transport	2.34E-02
150	GO:0009657: plastid organization	2.34E-02
151	GO:0032544: plastid translation	2.34E-02
152	GO:0007389: pattern specification process	2.34E-02
153	GO:0032502: developmental process	2.50E-02
154	GO:0031047: gene silencing by RNA	2.50E-02
155	GO:0009736: cytokinin-activated signaling pathway	2.63E-02
156	GO:0009056: catabolic process	2.66E-02
157	GO:1901657: glycosyl compound metabolic process	2.66E-02
158	GO:0051865: protein autoubiquitination	2.66E-02
159	GO:0006098: pentose-phosphate shunt	2.66E-02
160	GO:0046916: cellular transition metal ion homeostasis	2.66E-02
161	GO:0048507: meristem development	2.66E-02
162	GO:0048589: developmental growth	2.66E-02
163	GO:0009451: RNA modification	2.67E-02
164	GO:0009639: response to red or far red light	2.83E-02
165	GO:0009828: plant-type cell wall loosening	2.83E-02
166	GO:0006779: porphyrin-containing compound biosynthetic process	3.00E-02
167	GO:0010018: far-red light signaling pathway	3.00E-02
168	GO:1900865: chloroplast RNA modification	3.00E-02
169	GO:0016571: histone methylation	3.00E-02
170	GO:0016573: histone acetylation	3.00E-02
171	GO:0009641: shade avoidance	3.35E-02
172	GO:0006298: mismatch repair	3.35E-02
173	GO:0016441: posttranscriptional gene silencing	3.35E-02
174	GO:0006949: syncytium formation	3.35E-02
175	GO:0010192: mucilage biosynthetic process	3.35E-02
176	GO:0009299: mRNA transcription	3.35E-02
177	GO:0009870: defense response signaling pathway, resistance gene-dependent	3.35E-02
178	GO:0006535: cysteine biosynthetic process from serine	3.35E-02
179	GO:0048367: shoot system development	3.37E-02
180	GO:0048316: seed development	3.37E-02
181	GO:0048765: root hair cell differentiation	3.71E-02
182	GO:0009682: induced systemic resistance	3.71E-02
183	GO:0008285: negative regulation of cell proliferation	3.71E-02
184	GO:0009750: response to fructose	3.71E-02
185	GO:0009627: systemic acquired resistance	3.78E-02
186	GO:0009740: gibberellic acid mediated signaling pathway	3.78E-02
187	GO:0016567: protein ubiquitination	3.97E-02
188	GO:0015995: chlorophyll biosynthetic process	3.98E-02
189	GO:0048573: photoperiodism, flowering	3.98E-02
190	GO:0009624: response to nematode	4.08E-02
191	GO:0006790: sulfur compound metabolic process	4.09E-02
192	GO:0010152: pollen maturation	4.09E-02
193	GO:0005983: starch catabolic process	4.09E-02
194	GO:0010105: negative regulation of ethylene-activated signaling pathway	4.09E-02
195	GO:0045037: protein import into chloroplast stroma	4.09E-02
196	GO:0071555: cell wall organization	4.10E-02
197	GO:0051726: regulation of cell cycle	4.38E-02
198	GO:0009725: response to hormone	4.48E-02
199	GO:0006094: gluconeogenesis	4.48E-02
200	GO:0010588: cotyledon vascular tissue pattern formation	4.48E-02
201	GO:0030048: actin filament-based movement	4.48E-02
202	GO:0010102: lateral root morphogenesis	4.48E-02
203	GO:0009691: cytokinin biosynthetic process	4.48E-02
204	GO:2000028: regulation of photoperiodism, flowering	4.48E-02
205	GO:0010229: inflorescence development	4.48E-02
206	GO:0009832: plant-type cell wall biogenesis	4.63E-02
207	GO:0010311: lateral root formation	4.63E-02
208	GO:0009266: response to temperature stimulus	4.88E-02
209	GO:0006302: double-strand break repair	4.88E-02
210	GO:0048467: gynoecium development	4.88E-02
211	GO:0010207: photosystem II assembly	4.88E-02
212	GO:0010020: chloroplast fission	4.88E-02
213	GO:0009933: meristem structural organization	4.88E-02
214	GO:0010223: secondary shoot formation	4.88E-02
215	GO:0005975: carbohydrate metabolic process	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
2	GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity	0.00E+00
3	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
4	GO:0050619: phytochromobilin:ferredoxin oxidoreductase activity	0.00E+00
5	GO:0071633: dihydroceramidase activity	0.00E+00
6	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
7	GO:0004401: histidinol-phosphatase activity	0.00E+00
8	GO:0016636: oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor	0.00E+00
9	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
10	GO:0008805: carbon-monoxide oxygenase activity	4.36E-05
11	GO:0001872: (1->3)-beta-D-glucan binding	2.69E-04
12	GO:0010011: auxin binding	4.43E-04
13	GO:0010347: L-galactose-1-phosphate phosphatase activity	1.04E-03
14	GO:0010012: steroid 22-alpha hydroxylase activity	1.04E-03
15	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	1.04E-03
16	GO:0005227: calcium activated cation channel activity	1.04E-03
17	GO:0042834: peptidoglycan binding	1.04E-03
18	GO:0004818: glutamate-tRNA ligase activity	1.04E-03
19	GO:0008568: microtubule-severing ATPase activity	1.04E-03
20	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	1.04E-03
21	GO:0008395: steroid hydroxylase activity	1.04E-03
22	GO:0004832: valine-tRNA ligase activity	1.04E-03
23	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	1.04E-03
24	GO:0042586: peptide deformylase activity	1.04E-03
25	GO:0052381: tRNA dimethylallyltransferase activity	1.04E-03
26	GO:0045543: gibberellin 2-beta-dioxygenase activity	2.28E-03
27	GO:0043425: bHLH transcription factor binding	2.28E-03
28	GO:0010296: prenylcysteine methylesterase activity	2.28E-03
29	GO:0016415: octanoyltransferase activity	2.28E-03
30	GO:0004047: aminomethyltransferase activity	2.28E-03
31	GO:0004766: spermidine synthase activity	2.28E-03
32	GO:0052832: inositol monophosphate 3-phosphatase activity	2.28E-03
33	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	2.28E-03
34	GO:0004109: coproporphyrinogen oxidase activity	2.28E-03
35	GO:0019156: isoamylase activity	2.28E-03
36	GO:0008934: inositol monophosphate 1-phosphatase activity	2.28E-03
37	GO:0052833: inositol monophosphate 4-phosphatase activity	2.28E-03
38	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	2.28E-03
39	GO:0050736: O-malonyltransferase activity	2.28E-03
40	GO:0009884: cytokinin receptor activity	2.28E-03
41	GO:0050017: L-3-cyanoalanine synthase activity	2.28E-03
42	GO:0017118: lipoyltransferase activity	2.28E-03
43	GO:0016707: gibberellin 3-beta-dioxygenase activity	3.79E-03
44	GO:0045548: phenylalanine ammonia-lyase activity	3.79E-03
45	GO:0003913: DNA photolyase activity	3.79E-03
46	GO:0042781: 3'-tRNA processing endoribonuclease activity	3.79E-03
47	GO:0005034: osmosensor activity	3.79E-03
48	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	3.79E-03
49	GO:0003723: RNA binding	4.14E-03
50	GO:0004871: signal transducer activity	4.35E-03
51	GO:0016301: kinase activity	4.85E-03
52	GO:0080031: methyl salicylate esterase activity	5.53E-03
53	GO:0045544: gibberellin 20-oxidase activity	5.53E-03
54	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	5.53E-03
55	GO:0004519: endonuclease activity	7.45E-03
56	GO:0004845: uracil phosphoribosyltransferase activity	7.50E-03
57	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	7.50E-03
58	GO:0010328: auxin influx transmembrane transporter activity	7.50E-03
59	GO:0019199: transmembrane receptor protein kinase activity	7.50E-03
60	GO:0004930: G-protein coupled receptor activity	7.50E-03
61	GO:0004674: protein serine/threonine kinase activity	7.90E-03
62	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	9.69E-03
63	GO:0008725: DNA-3-methyladenine glycosylase activity	9.69E-03
64	GO:0005471: ATP:ADP antiporter activity	9.69E-03
65	GO:0005096: GTPase activator activity	1.02E-02
66	GO:0005345: purine nucleobase transmembrane transporter activity	1.03E-02
67	GO:0003779: actin binding	1.08E-02
68	GO:0030983: mismatched DNA binding	1.21E-02
69	GO:0080030: methyl indole-3-acetate esterase activity	1.21E-02
70	GO:0004332: fructose-bisphosphate aldolase activity	1.21E-02
71	GO:0004709: MAP kinase kinase kinase activity	1.21E-02
72	GO:0004556: alpha-amylase activity	1.21E-02
73	GO:0004124: cysteine synthase activity	1.46E-02
74	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.46E-02
75	GO:0004849: uridine kinase activity	1.46E-02
76	GO:0016832: aldehyde-lyase activity	1.46E-02
77	GO:0019900: kinase binding	1.46E-02
78	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.59E-02
79	GO:0016788: hydrolase activity, acting on ester bonds	1.72E-02
80	GO:0009881: photoreceptor activity	1.74E-02
81	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	1.88E-02
82	GO:0043621: protein self-association	1.99E-02
83	GO:0019901: protein kinase binding	2.18E-02
84	GO:0003724: RNA helicase activity	2.34E-02
85	GO:0046914: transition metal ion binding	2.34E-02
86	GO:0051015: actin filament binding	2.66E-02
87	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	2.66E-02
88	GO:0000156: phosphorelay response regulator activity	2.66E-02
89	GO:0016759: cellulose synthase activity	2.83E-02
90	GO:0015171: amino acid transmembrane transporter activity	2.98E-02
91	GO:0009672: auxin:proton symporter activity	3.00E-02
92	GO:0005200: structural constituent of cytoskeleton	3.01E-02
93	GO:0016413: O-acetyltransferase activity	3.19E-02
94	GO:0004673: protein histidine kinase activity	3.35E-02
95	GO:0004805: trehalose-phosphatase activity	3.35E-02
96	GO:0004722: protein serine/threonine phosphatase activity	3.79E-02
97	GO:0102483: scopolin beta-glucosidase activity	3.98E-02
98	GO:0030247: polysaccharide binding	3.98E-02
99	GO:0000049: tRNA binding	4.09E-02
100	GO:0015095: magnesium ion transmembrane transporter activity	4.48E-02
101	GO:0000155: phosphorelay sensor kinase activity	4.48E-02
102	GO:0009982: pseudouridine synthase activity	4.48E-02
103	GO:0003725: double-stranded RNA binding	4.48E-02
104	GO:0010329: auxin efflux transmembrane transporter activity	4.48E-02
105	GO:0015266: protein channel activity	4.48E-02
106	GO:0004222: metalloendopeptidase activity	4.85E-02
107	GO:0003774: motor activity	4.88E-02
108	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0035452: extrinsic component of plastid membrane	0.00E+00
3	GO:0000408: EKC/KEOPS complex	0.00E+00
4	GO:0009537: proplastid	0.00E+00
5	GO:0009349: riboflavin synthase complex	0.00E+00
6	GO:0005886: plasma membrane	8.84E-04
7	GO:0000791: euchromatin	1.04E-03
8	GO:0009986: cell surface	1.52E-03
9	GO:0009513: etioplast	2.28E-03
10	GO:0009569: chloroplast starch grain	2.28E-03
11	GO:0030870: Mre11 complex	2.28E-03
12	GO:0009509: chromoplast	3.79E-03
13	GO:0030139: endocytic vesicle	3.79E-03
14	GO:0046658: anchored component of plasma membrane	3.91E-03
15	GO:0032585: multivesicular body membrane	5.53E-03
16	GO:0032432: actin filament bundle	5.53E-03
17	GO:0009331: glycerol-3-phosphate dehydrogenase complex	5.53E-03
18	GO:0009507: chloroplast	6.10E-03
19	GO:0009707: chloroplast outer membrane	9.57E-03
20	GO:0000795: synaptonemal complex	9.69E-03
21	GO:0015629: actin cytoskeleton	1.36E-02
22	GO:0005871: kinesin complex	1.61E-02
23	GO:0009501: amyloplast	2.03E-02
24	GO:0031305: integral component of mitochondrial inner membrane	2.03E-02
25	GO:0031225: anchored component of membrane	2.32E-02
26	GO:0010494: cytoplasmic stress granule	2.66E-02
27	GO:0016459: myosin complex	3.35E-02
28	GO:0005884: actin filament	3.71E-02
29	GO:0005578: proteinaceous extracellular matrix	4.48E-02
30	GO:0009574: preprophase band	4.48E-02
31	GO:0016602: CCAAT-binding factor complex	4.48E-02
32	GO:0030095: chloroplast photosystem II	4.88E-02