Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G03890

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0019481: L-alanine catabolic process, by transamination0.00E+00
2GO:0042539: hypotonic salinity response5.18E-05
3GO:0009868: jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway5.18E-05
4GO:0006486: protein glycosylation1.01E-04
5GO:0043066: negative regulation of apoptotic process1.27E-04
6GO:0080185: effector dependent induction by symbiont of host immune response1.27E-04
7GO:1902066: regulation of cell wall pectin metabolic process1.27E-04
8GO:0031349: positive regulation of defense response1.27E-04
9GO:0045732: positive regulation of protein catabolic process1.27E-04
10GO:2000022: regulation of jasmonic acid mediated signaling pathway1.77E-04
11GO:0048586: regulation of long-day photoperiodism, flowering2.17E-04
12GO:0032922: circadian regulation of gene expression2.17E-04
13GO:0061158: 3'-UTR-mediated mRNA destabilization2.17E-04
14GO:2001009: regulation of plant-type cell wall cellulose biosynthetic process2.17E-04
15GO:1901672: positive regulation of systemic acquired resistance2.17E-04
16GO:0009958: positive gravitropism2.71E-04
17GO:0009152: purine ribonucleotide biosynthetic process3.17E-04
18GO:0010104: regulation of ethylene-activated signaling pathway3.17E-04
19GO:0007112: male meiosis cytokinesis4.24E-04
20GO:0009247: glycolipid biosynthetic process5.39E-04
21GO:0001731: formation of translation preinitiation complex6.60E-04
22GO:0048827: phyllome development6.60E-04
23GO:0009861: jasmonic acid and ethylene-dependent systemic resistance7.87E-04
24GO:0000911: cytokinesis by cell plate formation7.87E-04
25GO:0080167: response to karrikin8.01E-04
26GO:0019375: galactolipid biosynthetic process1.06E-03
27GO:0045010: actin nucleation1.06E-03
28GO:0009787: regulation of abscisic acid-activated signaling pathway1.06E-03
29GO:0030162: regulation of proteolysis1.06E-03
30GO:0006491: N-glycan processing1.06E-03
31GO:1900150: regulation of defense response to fungus1.06E-03
32GO:0048766: root hair initiation1.06E-03
33GO:0006972: hyperosmotic response1.20E-03
34GO:0009932: cell tip growth1.20E-03
35GO:0010112: regulation of systemic acquired resistance1.35E-03
36GO:0006189: 'de novo' IMP biosynthetic process1.35E-03
37GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.50E-03
38GO:0018105: peptidyl-serine phosphorylation1.92E-03
39GO:0006626: protein targeting to mitochondrion2.19E-03
40GO:0006468: protein phosphorylation2.30E-03
41GO:0007034: vacuolar transport2.38E-03
42GO:0006446: regulation of translational initiation2.38E-03
43GO:0009266: response to temperature stimulus2.38E-03
44GO:0007030: Golgi organization2.56E-03
45GO:0035556: intracellular signal transduction2.84E-03
46GO:0006487: protein N-linked glycosylation2.96E-03
47GO:0043622: cortical microtubule organization3.16E-03
48GO:0003333: amino acid transmembrane transport3.37E-03
49GO:0048278: vesicle docking3.37E-03
50GO:0007165: signal transduction3.74E-03
51GO:0009306: protein secretion4.03E-03
52GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.26E-03
53GO:0061025: membrane fusion4.96E-03
54GO:0048825: cotyledon development5.21E-03
55GO:0046777: protein autophosphorylation6.50E-03
56GO:0051607: defense response to virus6.76E-03
57GO:0001666: response to hypoxia7.04E-03
58GO:0009816: defense response to bacterium, incompatible interaction7.31E-03
59GO:0045892: negative regulation of transcription, DNA-templated7.39E-03
60GO:0009627: systemic acquired resistance7.59E-03
61GO:0006906: vesicle fusion7.59E-03
62GO:0009817: defense response to fungus, incompatible interaction8.46E-03
63GO:0048767: root hair elongation8.76E-03
64GO:0048364: root development9.36E-03
65GO:0009631: cold acclimation9.36E-03
66GO:0006865: amino acid transport9.68E-03
67GO:0006839: mitochondrial transport1.09E-02
68GO:0009926: auxin polar transport1.19E-02
69GO:0008643: carbohydrate transport1.26E-02
70GO:0031347: regulation of defense response1.37E-02
71GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process1.37E-02
72GO:0009585: red, far-red light phototransduction1.47E-02
73GO:0010224: response to UV-B1.51E-02
74GO:0009738: abscisic acid-activated signaling pathway1.54E-02
75GO:0009737: response to abscisic acid1.69E-02
76GO:0009620: response to fungus1.77E-02
77GO:0042545: cell wall modification1.85E-02
78GO:0009058: biosynthetic process2.31E-02
79GO:0009845: seed germination2.35E-02
80GO:0016036: cellular response to phosphate starvation2.66E-02
81GO:0045490: pectin catabolic process2.79E-02
82GO:0009651: response to salt stress2.99E-02
83GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process3.03E-02
84GO:0009617: response to bacterium3.17E-02
85GO:0010468: regulation of gene expression3.17E-02
86GO:0042742: defense response to bacterium3.24E-02
87GO:0006970: response to osmotic stress4.02E-02
88GO:0007049: cell cycle4.12E-02
89GO:0009409: response to cold4.37E-02
RankGO TermAdjusted P value
1GO:0008092: cytoskeletal protein binding0.00E+00
2GO:0004644: phosphoribosylglycinamide formyltransferase activity0.00E+00
3GO:0005522: profilin binding0.00E+00
4GO:0046481: digalactosyldiacylglycerol synthase activity5.18E-05
5GO:1901149: salicylic acid binding5.18E-05
6GO:0047429: nucleoside-triphosphate diphosphatase activity5.18E-05
7GO:0008378: galactosyltransferase activity6.74E-05
8GO:0016742: hydroxymethyl-, formyl- and related transferase activity2.17E-04
9GO:0008864: formyltetrahydrofolate deformylase activity2.17E-04
10GO:0035250: UDP-galactosyltransferase activity3.17E-04
11GO:0004571: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity3.17E-04
12GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity3.17E-04
13GO:0009931: calcium-dependent protein serine/threonine kinase activity5.37E-04
14GO:0004040: amidase activity5.39E-04
15GO:0004683: calmodulin-dependent protein kinase activity5.66E-04
16GO:0003730: mRNA 3'-UTR binding7.87E-04
17GO:0004559: alpha-mannosidase activity7.87E-04
18GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism2.19E-03
19GO:0004672: protein kinase activity2.20E-03
20GO:0016758: transferase activity, transferring hexosyl groups2.26E-03
21GO:0051087: chaperone binding3.16E-03
22GO:0005515: protein binding3.31E-03
23GO:0004707: MAP kinase activity3.37E-03
24GO:0016301: kinase activity3.44E-03
25GO:0008514: organic anion transmembrane transporter activity4.03E-03
26GO:0005102: receptor binding4.26E-03
27GO:0005509: calcium ion binding5.85E-03
28GO:0051015: actin filament binding5.97E-03
29GO:0000149: SNARE binding1.06E-02
30GO:0005484: SNAP receptor activity1.19E-02
31GO:0015171: amino acid transmembrane transporter activity1.58E-02
32GO:0031625: ubiquitin protein ligase binding1.58E-02
33GO:0045330: aspartyl esterase activity1.58E-02
34GO:0030599: pectinesterase activity1.81E-02
35GO:0003779: actin binding1.85E-02
36GO:0005524: ATP binding1.97E-02
37GO:0005516: calmodulin binding2.41E-02
38GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding2.44E-02
39GO:0046910: pectinesterase inhibitor activity2.66E-02
40GO:0008194: UDP-glycosyltransferase activity3.03E-02
41GO:0016757: transferase activity, transferring glycosyl groups3.05E-02
42GO:0003743: translation initiation factor activity3.12E-02
43GO:0000287: magnesium ion binding3.76E-02
44GO:0043531: ADP binding4.07E-02
45GO:0004842: ubiquitin-protein transferase activity4.46E-02
46GO:0004674: protein serine/threonine kinase activity4.80E-02
RankGO TermAdjusted P value
1GO:0005911: cell-cell junction5.18E-05
2GO:0009707: chloroplast outer membrane6.24E-04
3GO:0016282: eukaryotic 43S preinitiation complex6.60E-04
4GO:0030140: trans-Golgi network transport vesicle6.60E-04
5GO:0033290: eukaryotic 48S preinitiation complex7.87E-04
6GO:0009986: cell surface9.18E-04
7GO:0005856: cytoskeleton1.11E-03
8GO:0000139: Golgi membrane1.95E-03
9GO:0005654: nucleoplasm2.26E-03
10GO:0009504: cell plate5.21E-03
11GO:0071944: cell periphery5.97E-03
12GO:0010319: stromule6.49E-03
13GO:0019005: SCF ubiquitin ligase complex8.46E-03
14GO:0031201: SNARE complex1.13E-02
15GO:0005794: Golgi apparatus1.19E-02
16GO:0031966: mitochondrial membrane1.40E-02
17GO:0005635: nuclear envelope1.55E-02
18GO:0009524: phragmoplast2.31E-02
19GO:0005802: trans-Golgi network2.56E-02
20GO:0005615: extracellular space3.03E-02
21GO:0005874: microtubule4.33E-02
22GO:0005829: cytosol4.75E-02
23GO:0005789: endoplasmic reticulum membrane4.92E-02
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Gene type



Gene DE type