co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G03650

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032259: methylation	9.42E-05
2	GO:0000023: maltose metabolic process	1.02E-04
3	GO:0006047: UDP-N-acetylglucosamine metabolic process	1.02E-04
4	GO:0000025: maltose catabolic process	1.02E-04
5	GO:0005980: glycogen catabolic process	1.02E-04
6	GO:0015995: chlorophyll biosynthetic process	1.02E-04
7	GO:0009090: homoserine biosynthetic process	1.02E-04
8	GO:0019276: UDP-N-acetylgalactosamine metabolic process	1.02E-04
9	GO:0010028: xanthophyll cycle	1.02E-04
10	GO:0034337: RNA folding	1.02E-04
11	GO:0055114: oxidation-reduction process	1.62E-04
12	GO:0005983: starch catabolic process	1.82E-04
13	GO:0030388: fructose 1,6-bisphosphate metabolic process	2.40E-04
14	GO:0015804: neutral amino acid transport	2.40E-04
15	GO:0006898: receptor-mediated endocytosis	2.40E-04
16	GO:0005976: polysaccharide metabolic process	2.40E-04
17	GO:0010353: response to trehalose	2.40E-04
18	GO:0016122: xanthophyll metabolic process	2.40E-04
19	GO:0006000: fructose metabolic process	3.99E-04
20	GO:0006048: UDP-N-acetylglucosamine biosynthetic process	3.99E-04
21	GO:0006518: peptide metabolic process	3.99E-04
22	GO:0009067: aspartate family amino acid biosynthetic process	5.73E-04
23	GO:1902358: sulfate transmembrane transport	5.73E-04
24	GO:0006662: glycerol ether metabolic process	6.55E-04
25	GO:0006109: regulation of carbohydrate metabolic process	7.62E-04
26	GO:0015994: chlorophyll metabolic process	7.62E-04
27	GO:0006021: inositol biosynthetic process	7.62E-04
28	GO:0071483: cellular response to blue light	7.62E-04
29	GO:0006656: phosphatidylcholine biosynthetic process	9.62E-04
30	GO:0009904: chloroplast accumulation movement	9.62E-04
31	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.17E-03
32	GO:1901259: chloroplast rRNA processing	1.40E-03
33	GO:0009903: chloroplast avoidance movement	1.40E-03
34	GO:0009088: threonine biosynthetic process	1.40E-03
35	GO:0009772: photosynthetic electron transport in photosystem II	1.65E-03
36	GO:0010196: nonphotochemical quenching	1.65E-03
37	GO:0008272: sulfate transport	1.65E-03
38	GO:0009610: response to symbiotic fungus	1.65E-03
39	GO:0009642: response to light intensity	1.90E-03
40	GO:0030091: protein repair	1.90E-03
41	GO:0034599: cellular response to oxidative stress	1.94E-03
42	GO:0006002: fructose 6-phosphate metabolic process	2.17E-03
43	GO:0015996: chlorophyll catabolic process	2.17E-03
44	GO:0010206: photosystem II repair	2.45E-03
45	GO:0006754: ATP biosynthetic process	2.45E-03
46	GO:0009086: methionine biosynthetic process	2.74E-03
47	GO:0009641: shade avoidance	3.05E-03
48	GO:0045454: cell redox homeostasis	3.10E-03
49	GO:0009773: photosynthetic electron transport in photosystem I	3.36E-03
50	GO:0009089: lysine biosynthetic process via diaminopimelate	3.36E-03
51	GO:0043085: positive regulation of catalytic activity	3.36E-03
52	GO:0006094: gluconeogenesis	4.02E-03
53	GO:0005986: sucrose biosynthetic process	4.02E-03
54	GO:0018107: peptidyl-threonine phosphorylation	4.02E-03
55	GO:0019253: reductive pentose-phosphate cycle	4.37E-03
56	GO:0007015: actin filament organization	4.37E-03
57	GO:0010223: secondary shoot formation	4.37E-03
58	GO:0009266: response to temperature stimulus	4.37E-03
59	GO:0005985: sucrose metabolic process	4.72E-03
60	GO:0006636: unsaturated fatty acid biosynthetic process	5.09E-03
61	GO:0061077: chaperone-mediated protein folding	6.24E-03
62	GO:0003333: amino acid transmembrane transport	6.24E-03
63	GO:0051260: protein homooligomerization	6.24E-03
64	GO:0019748: secondary metabolic process	6.64E-03
65	GO:0006606: protein import into nucleus	8.35E-03
66	GO:0009741: response to brassinosteroid	8.80E-03
67	GO:0015986: ATP synthesis coupled proton transport	9.26E-03
68	GO:0008654: phospholipid biosynthetic process	9.73E-03
69	GO:0009630: gravitropism	1.07E-02
70	GO:1901657: glycosyl compound metabolic process	1.12E-02
71	GO:0006906: vesicle fusion	1.43E-02
72	GO:0016311: dephosphorylation	1.54E-02
73	GO:0009813: flavonoid biosynthetic process	1.65E-02
74	GO:0015979: photosynthesis	1.72E-02
75	GO:0009793: embryo development ending in seed dormancy	1.74E-02
76	GO:0009631: cold acclimation	1.77E-02
77	GO:0007568: aging	1.77E-02
78	GO:0006865: amino acid transport	1.83E-02
79	GO:0006979: response to oxidative stress	2.07E-02
80	GO:0006631: fatty acid metabolic process	2.13E-02
81	GO:0006887: exocytosis	2.13E-02
82	GO:0006629: lipid metabolic process	2.22E-02
83	GO:0010114: response to red light	2.26E-02
84	GO:0006364: rRNA processing	2.80E-02
85	GO:0006813: potassium ion transport	2.80E-02
86	GO:0010224: response to UV-B	2.86E-02
87	GO:0043086: negative regulation of catalytic activity	3.15E-02
88	GO:0006810: transport	3.31E-02
89	GO:0009553: embryo sac development	3.52E-02
90	GO:0018105: peptidyl-serine phosphorylation	3.67E-02
91	GO:0006633: fatty acid biosynthetic process	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
2	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
3	GO:0004567: beta-mannosidase activity	0.00E+00
4	GO:0052667: phosphomethylethanolamine N-methyltransferase activity	0.00E+00
5	GO:0080082: esculin beta-glucosidase activity	0.00E+00
6	GO:0046408: chlorophyll synthetase activity	0.00E+00
7	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
8	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
9	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
10	GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity	1.02E-04
11	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	1.02E-04
12	GO:0030794: (S)-coclaurine-N-methyltransferase activity	1.02E-04
13	GO:0080079: cellobiose glucosidase activity	1.02E-04
14	GO:0050521: alpha-glucan, water dikinase activity	1.02E-04
15	GO:0008184: glycogen phosphorylase activity	1.02E-04
16	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	1.02E-04
17	GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity	1.02E-04
18	GO:0004134: 4-alpha-glucanotransferase activity	1.02E-04
19	GO:0004645: phosphorylase activity	1.02E-04
20	GO:0034256: chlorophyll(ide) b reductase activity	1.02E-04
21	GO:0045486: naringenin 3-dioxygenase activity	1.02E-04
22	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.40E-04
23	GO:0004412: homoserine dehydrogenase activity	2.40E-04
24	GO:0004512: inositol-3-phosphate synthase activity	2.40E-04
25	GO:0018708: thiol S-methyltransferase activity	2.40E-04
26	GO:0000234: phosphoethanolamine N-methyltransferase activity	2.40E-04
27	GO:0015172: acidic amino acid transmembrane transporter activity	2.40E-04
28	GO:0042389: omega-3 fatty acid desaturase activity	2.40E-04
29	GO:0010297: heteropolysaccharide binding	2.40E-04
30	GO:0008168: methyltransferase activity	2.62E-04
31	GO:0010277: chlorophyllide a oxygenase [overall] activity	3.99E-04
32	GO:0047134: protein-disulfide reductase activity	5.65E-04
33	GO:0004072: aspartate kinase activity	5.73E-04
34	GO:0019201: nucleotide kinase activity	5.73E-04
35	GO:0015175: neutral amino acid transmembrane transporter activity	5.73E-04
36	GO:0004791: thioredoxin-disulfide reductase activity	7.02E-04
37	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	9.07E-04
38	GO:0008200: ion channel inhibitor activity	1.17E-03
39	GO:2001070: starch binding	1.17E-03
40	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.40E-03
41	GO:0004017: adenylate kinase activity	1.40E-03
42	GO:0004602: glutathione peroxidase activity	1.40E-03
43	GO:0016491: oxidoreductase activity	1.82E-03
44	GO:0004033: aldo-keto reductase (NADP) activity	1.90E-03
45	GO:0003993: acid phosphatase activity	1.94E-03
46	GO:0008271: secondary active sulfate transmembrane transporter activity	2.17E-03
47	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.17E-03
48	GO:0015293: symporter activity	2.67E-03
49	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	2.74E-03
50	GO:0008047: enzyme activator activity	3.05E-03
51	GO:0030234: enzyme regulator activity	3.05E-03
52	GO:0044183: protein binding involved in protein folding	3.36E-03
53	GO:0047372: acylglycerol lipase activity	3.36E-03
54	GO:0015386: potassium:proton antiporter activity	3.36E-03
55	GO:0015116: sulfate transmembrane transporter activity	3.69E-03
56	GO:0004565: beta-galactosidase activity	4.02E-03
57	GO:0015035: protein disulfide oxidoreductase activity	4.66E-03
58	GO:0004857: enzyme inhibitor activity	5.46E-03
59	GO:0031418: L-ascorbic acid binding	5.46E-03
60	GO:0015079: potassium ion transmembrane transporter activity	5.85E-03
61	GO:0016779: nucleotidyltransferase activity	6.64E-03
62	GO:0003756: protein disulfide isomerase activity	7.48E-03
63	GO:0005249: voltage-gated potassium channel activity	8.35E-03
64	GO:0008536: Ran GTPase binding	8.80E-03
65	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	8.80E-03
66	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	9.93E-03
67	GO:0048038: quinone binding	1.02E-02
68	GO:0016597: amino acid binding	1.27E-02
69	GO:0102483: scopolin beta-glucosidase activity	1.48E-02
70	GO:0016787: hydrolase activity	1.55E-02
71	GO:0004222: metalloendopeptidase activity	1.71E-02
72	GO:0003746: translation elongation factor activity	1.89E-02
73	GO:0008422: beta-glucosidase activity	2.01E-02
74	GO:0000149: SNARE binding	2.01E-02
75	GO:0050661: NADP binding	2.07E-02
76	GO:0005484: SNAP receptor activity	2.26E-02
77	GO:0004185: serine-type carboxypeptidase activity	2.26E-02
78	GO:0051537: 2 iron, 2 sulfur cluster binding	2.39E-02
79	GO:0005198: structural molecule activity	2.46E-02
80	GO:0015171: amino acid transmembrane transporter activity	3.01E-02
81	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.22E-02
82	GO:0019843: rRNA binding	4.22E-02
83	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.30E-02
84	GO:0030170: pyridoxal phosphate binding	4.54E-02
85	GO:0008565: protein transporter activity	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0009534: chloroplast thylakoid	2.37E-19
2	GO:0009507: chloroplast	3.08E-19
3	GO:0009535: chloroplast thylakoid membrane	1.14E-14
4	GO:0009941: chloroplast envelope	5.69E-09
5	GO:0010287: plastoglobule	6.73E-05
6	GO:0009543: chloroplast thylakoid lumen	7.44E-05
7	GO:0031977: thylakoid lumen	2.12E-04
8	GO:0042651: thylakoid membrane	3.67E-04
9	GO:0031969: chloroplast membrane	3.92E-04
10	GO:0008076: voltage-gated potassium channel complex	5.73E-04
11	GO:0009544: chloroplast ATP synthase complex	7.62E-04
12	GO:0009570: chloroplast stroma	1.08E-03
13	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.17E-03
14	GO:0031982: vesicle	1.90E-03
15	GO:0031901: early endosome membrane	2.45E-03
16	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.45E-03
17	GO:0032040: small-subunit processome	3.69E-03
18	GO:0030095: chloroplast photosystem II	4.37E-03
19	GO:0009654: photosystem II oxygen evolving complex	5.85E-03
20	GO:0019898: extrinsic component of membrane	9.73E-03
21	GO:0009579: thylakoid	1.05E-02
22	GO:0010319: stromule	1.22E-02
23	GO:0031201: SNARE complex	2.13E-02
24	GO:0016020: membrane	3.05E-02
25	GO:0009706: chloroplast inner membrane	3.59E-02
26	GO:0005623: cell	4.30E-02