Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G03290

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006216: cytidine catabolic process0.00E+00
2GO:0006858: extracellular transport0.00E+00
3GO:0006616: SRP-dependent cotranslational protein targeting to membrane, translocation0.00E+00
4GO:2000117: negative regulation of cysteine-type endopeptidase activity0.00E+00
5GO:0010398: xylogalacturonan metabolic process0.00E+00
6GO:1900409: positive regulation of cellular response to oxidative stress0.00E+00
7GO:0072722: response to amitrole0.00E+00
8GO:0006903: vesicle targeting0.00E+00
9GO:0015031: protein transport2.18E-05
10GO:0046283: anthocyanin-containing compound metabolic process3.97E-05
11GO:0006564: L-serine biosynthetic process3.97E-05
12GO:0006099: tricarboxylic acid cycle4.09E-05
13GO:0006102: isocitrate metabolic process1.40E-04
14GO:1901657: glycosyl compound metabolic process1.73E-04
15GO:0010120: camalexin biosynthetic process1.75E-04
16GO:0019628: urate catabolic process1.80E-04
17GO:1901430: positive regulation of syringal lignin biosynthetic process1.80E-04
18GO:0042964: thioredoxin reduction1.80E-04
19GO:0006144: purine nucleobase metabolic process1.80E-04
20GO:0009821: alkaloid biosynthetic process2.13E-04
21GO:0046686: response to cadmium ion2.17E-04
22GO:0009615: response to virus2.41E-04
23GO:0048354: mucilage biosynthetic process involved in seed coat development2.55E-04
24GO:0009058: biosynthetic process3.11E-04
25GO:0009407: toxin catabolic process3.92E-04
26GO:0006672: ceramide metabolic process4.05E-04
27GO:0010372: positive regulation of gibberellin biosynthetic process4.05E-04
28GO:1902000: homogentisate catabolic process4.05E-04
29GO:1901703: protein localization involved in auxin polar transport4.05E-04
30GO:0043132: NAD transport4.05E-04
31GO:0042814: monopolar cell growth4.05E-04
32GO:0031204: posttranslational protein targeting to membrane, translocation4.05E-04
33GO:0006123: mitochondrial electron transport, cytochrome c to oxygen4.05E-04
34GO:0046939: nucleotide phosphorylation4.05E-04
35GO:0006807: nitrogen compound metabolic process4.55E-04
36GO:0010150: leaf senescence4.78E-04
37GO:0007031: peroxisome organization5.74E-04
38GO:0055114: oxidation-reduction process6.05E-04
39GO:0000162: tryptophan biosynthetic process6.38E-04
40GO:0009072: aromatic amino acid family metabolic process6.61E-04
41GO:0010359: regulation of anion channel activity6.61E-04
42GO:0055074: calcium ion homeostasis6.61E-04
43GO:0044375: regulation of peroxisome size6.61E-04
44GO:0090630: activation of GTPase activity6.61E-04
45GO:0006517: protein deglycosylation6.61E-04
46GO:0010272: response to silver ion6.61E-04
47GO:0015992: proton transport8.51E-04
48GO:0006612: protein targeting to membrane9.45E-04
49GO:0006893: Golgi to plasma membrane transport9.45E-04
50GO:0015858: nucleoside transport9.45E-04
51GO:0009306: protein secretion1.09E-03
52GO:0042742: defense response to bacterium1.19E-03
53GO:0000919: cell plate assembly1.25E-03
54GO:0010188: response to microbial phytotoxin1.25E-03
55GO:0006878: cellular copper ion homeostasis1.25E-03
56GO:0009851: auxin biosynthetic process1.57E-03
57GO:0097428: protein maturation by iron-sulfur cluster transfer1.59E-03
58GO:0060918: auxin transport1.96E-03
59GO:0009228: thiamine biosynthetic process1.96E-03
60GO:0009972: cytidine deamination1.96E-03
61GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly1.96E-03
62GO:0006561: proline biosynthetic process1.96E-03
63GO:0006121: mitochondrial electron transport, succinate to ubiquinone1.96E-03
64GO:0010264: myo-inositol hexakisphosphate biosynthetic process1.96E-03
65GO:0006904: vesicle docking involved in exocytosis2.16E-03
66GO:0009751: response to salicylic acid2.26E-03
67GO:0042744: hydrogen peroxide catabolic process2.27E-03
68GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response2.35E-03
69GO:0009082: branched-chain amino acid biosynthetic process2.35E-03
70GO:0009099: valine biosynthetic process2.35E-03
71GO:0009554: megasporogenesis2.35E-03
72GO:1900056: negative regulation of leaf senescence2.77E-03
73GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c2.77E-03
74GO:0071669: plant-type cell wall organization or biogenesis2.77E-03
75GO:0022904: respiratory electron transport chain2.77E-03
76GO:0006888: ER to Golgi vesicle-mediated transport2.84E-03
77GO:0006402: mRNA catabolic process3.21E-03
78GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline3.21E-03
79GO:0006491: N-glycan processing3.21E-03
80GO:0006499: N-terminal protein myristoylation3.47E-03
81GO:0010119: regulation of stomatal movement3.63E-03
82GO:0022900: electron transport chain3.67E-03
83GO:0019430: removal of superoxide radicals3.67E-03
84GO:0060321: acceptance of pollen3.67E-03
85GO:0007186: G-protein coupled receptor signaling pathway3.67E-03
86GO:0009097: isoleucine biosynthetic process3.67E-03
87GO:0010204: defense response signaling pathway, resistance gene-independent3.67E-03
88GO:0046685: response to arsenic-containing substance4.15E-03
89GO:0009060: aerobic respiration4.15E-03
90GO:0043067: regulation of programmed cell death4.65E-03
91GO:0009098: leucine biosynthetic process4.65E-03
92GO:0006887: exocytosis4.72E-03
93GO:0006032: chitin catabolic process5.18E-03
94GO:0009688: abscisic acid biosynthetic process5.18E-03
95GO:0043069: negative regulation of programmed cell death5.18E-03
96GO:0072593: reactive oxygen species metabolic process5.72E-03
97GO:0009682: induced systemic resistance5.72E-03
98GO:0052544: defense response by callose deposition in cell wall5.72E-03
99GO:0000272: polysaccharide catabolic process5.72E-03
100GO:0009636: response to toxic substance5.75E-03
101GO:0009723: response to ethylene6.07E-03
102GO:0006790: sulfur compound metabolic process6.28E-03
103GO:0002213: defense response to insect6.28E-03
104GO:0016925: protein sumoylation6.28E-03
105GO:0006890: retrograde vesicle-mediated transport, Golgi to ER6.28E-03
106GO:0009846: pollen germination6.43E-03
107GO:0010102: lateral root morphogenesis6.86E-03
108GO:0055046: microgametogenesis6.86E-03
109GO:0009718: anthocyanin-containing compound biosynthetic process6.86E-03
110GO:0034605: cellular response to heat7.46E-03
111GO:0007030: Golgi organization8.08E-03
112GO:0010167: response to nitrate8.08E-03
113GO:0046854: phosphatidylinositol phosphorylation8.08E-03
114GO:0006096: glycolytic process8.16E-03
115GO:0045454: cell redox homeostasis8.34E-03
116GO:0009626: plant-type hypersensitive response8.70E-03
117GO:0009620: response to fungus8.97E-03
118GO:0005992: trehalose biosynthetic process9.37E-03
119GO:0006874: cellular calcium ion homeostasis1.00E-02
120GO:0006825: copper ion transport1.00E-02
121GO:0048278: vesicle docking1.07E-02
122GO:0016998: cell wall macromolecule catabolic process1.07E-02
123GO:0030433: ubiquitin-dependent ERAD pathway1.14E-02
124GO:0010227: floral organ abscission1.22E-02
125GO:0009561: megagametogenesis1.29E-02
126GO:0010089: xylem development1.29E-02
127GO:0010118: stomatal movement1.44E-02
128GO:0045489: pectin biosynthetic process1.52E-02
129GO:0006662: glycerol ether metabolic process1.52E-02
130GO:0048544: recognition of pollen1.60E-02
131GO:0061025: membrane fusion1.60E-02
132GO:0006979: response to oxidative stress1.62E-02
133GO:0010183: pollen tube guidance1.68E-02
134GO:0031047: gene silencing by RNA1.85E-02
135GO:0032502: developmental process1.85E-02
136GO:0009630: gravitropism1.85E-02
137GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process1.91E-02
138GO:0030163: protein catabolic process1.94E-02
139GO:0009735: response to cytokinin2.01E-02
140GO:0006464: cellular protein modification process2.03E-02
141GO:0010252: auxin homeostasis2.03E-02
142GO:0006914: autophagy2.03E-02
143GO:0006906: vesicle fusion2.48E-02
144GO:0009627: systemic acquired resistance2.48E-02
145GO:0009826: unidimensional cell growth2.54E-02
146GO:0016049: cell growth2.68E-02
147GO:0008219: cell death2.77E-02
148GO:0009860: pollen tube growth2.85E-02
149GO:0050832: defense response to fungus2.90E-02
150GO:0007568: aging3.08E-02
151GO:0045087: innate immune response3.28E-02
152GO:0006511: ubiquitin-dependent protein catabolic process3.30E-02
153GO:0034599: cellular response to oxidative stress3.39E-02
154GO:0016192: vesicle-mediated transport3.44E-02
155GO:0006839: mitochondrial transport3.60E-02
156GO:0006897: endocytosis3.71E-02
157GO:0008283: cell proliferation3.93E-02
158GO:0009926: auxin polar transport3.93E-02
159GO:0051707: response to other organism3.93E-02
160GO:0000209: protein polyubiquitination4.04E-02
161GO:0042546: cell wall biogenesis4.04E-02
162GO:0006855: drug transmembrane transport4.39E-02
163GO:0031347: regulation of defense response4.50E-02
164GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process4.50E-02
165GO:0009664: plant-type cell wall organization4.62E-02
166GO:0042538: hyperosmotic salinity response4.62E-02
167GO:0016042: lipid catabolic process4.68E-02
168GO:0006629: lipid metabolic process4.81E-02
169GO:0009809: lignin biosynthetic process4.86E-02
170GO:0051603: proteolysis involved in cellular protein catabolic process4.98E-02
RankGO TermAdjusted P value
1GO:0008418: protein-N-terminal asparagine amidohydrolase activity0.00E+00
2GO:0051765: inositol tetrakisphosphate kinase activity0.00E+00
3GO:0047720: indoleacetaldoxime dehydratase activity0.00E+00
4GO:0047844: deoxycytidine deaminase activity0.00E+00
5GO:0044610: FMN transmembrane transporter activity0.00E+00
6GO:0004846: urate oxidase activity0.00E+00
7GO:0001729: ceramide kinase activity0.00E+00
8GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity0.00E+00
9GO:0016034: maleylacetoacetate isomerase activity0.00E+00
10GO:0051766: inositol trisphosphate kinase activity0.00E+00
11GO:0004449: isocitrate dehydrogenase (NAD+) activity1.33E-05
12GO:0004364: glutathione transferase activity5.67E-05
13GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity5.89E-05
14GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity5.89E-05
15GO:0000824: inositol tetrakisphosphate 3-kinase activity1.80E-04
16GO:0033984: indole-3-glycerol-phosphate lyase activity1.80E-04
17GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity1.80E-04
18GO:0047326: inositol tetrakisphosphate 5-kinase activity1.80E-04
19GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity1.80E-04
20GO:0048037: cofactor binding1.80E-04
21GO:0015230: FAD transmembrane transporter activity1.80E-04
22GO:0019786: Atg8-specific protease activity1.80E-04
23GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity1.80E-04
24GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity1.80E-04
25GO:0010013: N-1-naphthylphthalamic acid binding1.80E-04
26GO:0004425: indole-3-glycerol-phosphate synthase activity1.80E-04
27GO:0004743: pyruvate kinase activity2.55E-04
28GO:0030955: potassium ion binding2.55E-04
29GO:0016844: strictosidine synthase activity2.55E-04
30GO:0051724: NAD transporter activity4.05E-04
31GO:0019172: glyoxalase III activity4.05E-04
32GO:0004775: succinate-CoA ligase (ADP-forming) activity4.05E-04
33GO:0019779: Atg8 activating enzyme activity4.05E-04
34GO:0008517: folic acid transporter activity4.05E-04
35GO:0004776: succinate-CoA ligase (GDP-forming) activity4.05E-04
36GO:0004566: beta-glucuronidase activity4.05E-04
37GO:0015228: coenzyme A transmembrane transporter activity4.05E-04
38GO:0052739: phosphatidylserine 1-acylhydrolase activity4.05E-04
39GO:0052740: 1-acyl-2-lysophosphatidylserine acylhydrolase activity4.05E-04
40GO:0004617: phosphoglycerate dehydrogenase activity4.05E-04
41GO:0008422: beta-glucosidase activity5.24E-04
42GO:0005507: copper ion binding5.95E-04
43GO:0019829: cation-transporting ATPase activity6.61E-04
44GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity6.61E-04
45GO:0005198: structural molecule activity7.49E-04
46GO:0004601: peroxidase activity9.25E-04
47GO:0019201: nucleotide kinase activity9.45E-04
48GO:0052656: L-isoleucine transaminase activity9.45E-04
49GO:0052654: L-leucine transaminase activity9.45E-04
50GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity9.45E-04
51GO:0052655: L-valine transaminase activity9.45E-04
52GO:0005086: ARF guanyl-nucleotide exchange factor activity1.25E-03
53GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity1.25E-03
54GO:0004084: branched-chain-amino-acid transaminase activity1.25E-03
55GO:0004031: aldehyde oxidase activity1.25E-03
56GO:0050302: indole-3-acetaldehyde oxidase activity1.25E-03
57GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances1.25E-03
58GO:0019776: Atg8 ligase activity1.25E-03
59GO:0010279: indole-3-acetic acid amido synthetase activity1.25E-03
60GO:0004930: G-protein coupled receptor activity1.25E-03
61GO:0004834: tryptophan synthase activity1.25E-03
62GO:0004791: thioredoxin-disulfide reductase activity1.47E-03
63GO:0008374: O-acyltransferase activity1.59E-03
64GO:0008177: succinate dehydrogenase (ubiquinone) activity1.59E-03
65GO:0080122: AMP transmembrane transporter activity1.59E-03
66GO:0000104: succinate dehydrogenase activity1.59E-03
67GO:0031386: protein tag1.59E-03
68GO:0051538: 3 iron, 4 sulfur cluster binding1.59E-03
69GO:0035252: UDP-xylosyltransferase activity1.96E-03
70GO:0036402: proteasome-activating ATPase activity1.96E-03
71GO:0004126: cytidine deaminase activity2.35E-03
72GO:0004017: adenylate kinase activity2.35E-03
73GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity2.35E-03
74GO:0005347: ATP transmembrane transporter activity2.35E-03
75GO:0004656: procollagen-proline 4-dioxygenase activity2.35E-03
76GO:0015217: ADP transmembrane transporter activity2.35E-03
77GO:0008565: protein transporter activity2.42E-03
78GO:0009055: electron carrier activity2.56E-03
79GO:0008121: ubiquinol-cytochrome-c reductase activity2.77E-03
80GO:0102483: scopolin beta-glucosidase activity2.84E-03
81GO:0008970: phosphatidylcholine 1-acylhydrolase activity3.67E-03
82GO:0005375: copper ion transmembrane transporter activity3.67E-03
83GO:0003951: NAD+ kinase activity3.67E-03
84GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors3.98E-03
85GO:0000287: magnesium ion binding4.92E-03
86GO:0004568: chitinase activity5.18E-03
87GO:0051537: 2 iron, 2 sulfur cluster binding5.54E-03
88GO:0008794: arsenate reductase (glutaredoxin) activity5.72E-03
89GO:0004177: aminopeptidase activity5.72E-03
90GO:0008559: xenobiotic-transporting ATPase activity5.72E-03
91GO:0051287: NAD binding6.20E-03
92GO:0004022: alcohol dehydrogenase (NAD) activity6.86E-03
93GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism6.86E-03
94GO:0017025: TBP-class protein binding8.08E-03
95GO:0008061: chitin binding8.08E-03
96GO:0004970: ionotropic glutamate receptor activity8.08E-03
97GO:0005217: intracellular ligand-gated ion channel activity8.08E-03
98GO:0031418: L-ascorbic acid binding9.37E-03
99GO:0020037: heme binding9.87E-03
100GO:0015035: protein disulfide oxidoreductase activity1.01E-02
101GO:0004298: threonine-type endopeptidase activity1.07E-02
102GO:0003924: GTPase activity1.09E-02
103GO:0030170: pyridoxal phosphate binding1.37E-02
104GO:0047134: protein-disulfide reductase activity1.37E-02
105GO:0005509: calcium ion binding1.42E-02
106GO:0001085: RNA polymerase II transcription factor binding1.52E-02
107GO:0005199: structural constituent of cell wall1.52E-02
108GO:0004518: nuclease activity1.85E-02
109GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor1.94E-02
110GO:0042626: ATPase activity, coupled to transmembrane movement of substances2.17E-02
111GO:0016597: amino acid binding2.20E-02
112GO:0009931: calcium-dependent protein serine/threonine kinase activity2.48E-02
113GO:0004683: calmodulin-dependent protein kinase activity2.58E-02
114GO:0016798: hydrolase activity, acting on glycosyl bonds2.58E-02
115GO:0016788: hydrolase activity, acting on ester bonds2.69E-02
116GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity2.77E-02
117GO:0005096: GTPase activator activity2.87E-02
118GO:0043531: ADP binding2.90E-02
119GO:0016614: oxidoreductase activity, acting on CH-OH group of donors3.08E-02
120GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding3.08E-02
121GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds3.18E-02
122GO:0000149: SNARE binding3.50E-02
123GO:0051539: 4 iron, 4 sulfur cluster binding3.60E-02
124GO:0005484: SNAP receptor activity3.93E-02
125GO:0005525: GTP binding4.17E-02
126GO:0016298: lipase activity4.98E-02
RankGO TermAdjusted P value
1GO:0005784: Sec61 translocon complex0.00E+00
2GO:0031205: endoplasmic reticulum Sec complex0.00E+00
3GO:0005829: cytosol1.73E-06
4GO:0005773: vacuole1.65E-04
5GO:0005794: Golgi apparatus1.78E-04
6GO:0016442: RISC complex1.80E-04
7GO:0031901: early endosome membrane2.13E-04
8GO:0005886: plasma membrane3.32E-04
9GO:0045281: succinate dehydrogenase complex4.05E-04
10GO:0046861: glyoxysomal membrane6.61E-04
11GO:0009530: primary cell wall6.61E-04
12GO:0000502: proteasome complex9.37E-04
13GO:0070062: extracellular exosome9.45E-04
14GO:0005775: vacuolar lumen9.45E-04
15GO:0005776: autophagosome1.25E-03
16GO:0016471: vacuolar proton-transporting V-type ATPase complex1.25E-03
17GO:0005774: vacuolar membrane1.56E-03
18GO:0009504: cell plate1.57E-03
19GO:0000145: exocyst1.79E-03
20GO:0032588: trans-Golgi network membrane1.96E-03
21GO:0005778: peroxisomal membrane2.16E-03
22GO:0005618: cell wall2.16E-03
23GO:0031597: cytosolic proteasome complex2.35E-03
24GO:0030173: integral component of Golgi membrane2.35E-03
25GO:0031595: nuclear proteasome complex2.77E-03
26GO:0031982: vesicle3.21E-03
27GO:0000421: autophagosome membrane3.21E-03
28GO:0045273: respiratory chain complex II3.21E-03
29GO:0019773: proteasome core complex, alpha-subunit complex3.67E-03
30GO:0005779: integral component of peroxisomal membrane3.67E-03
31GO:0009514: glyoxysome3.67E-03
32GO:0005768: endosome3.71E-03
33GO:0031090: organelle membrane4.15E-03
34GO:0010494: cytoplasmic stress granule4.15E-03
35GO:0008540: proteasome regulatory particle, base subcomplex4.65E-03
36GO:0005765: lysosomal membrane5.72E-03
37GO:0090404: pollen tube tip5.72E-03
38GO:0048471: perinuclear region of cytoplasm5.72E-03
39GO:0005856: cytoskeleton5.75E-03
40GO:0005777: peroxisome6.80E-03
41GO:0005750: mitochondrial respiratory chain complex III7.46E-03
42GO:0005783: endoplasmic reticulum8.21E-03
43GO:0005758: mitochondrial intermembrane space9.37E-03
44GO:0070469: respiratory chain1.00E-02
45GO:0005839: proteasome core complex1.07E-02
46GO:0005802: trans-Golgi network1.13E-02
47GO:0031410: cytoplasmic vesicle1.14E-02
48GO:0009524: phragmoplast1.30E-02
49GO:0009506: plasmodesma1.54E-02
50GO:0016592: mediator complex1.85E-02
51GO:0030529: intracellular ribonucleoprotein complex2.30E-02
52GO:0000932: P-body2.30E-02
53GO:0005788: endoplasmic reticulum lumen2.39E-02
54GO:0005667: transcription factor complex2.48E-02
55GO:0000139: Golgi membrane2.51E-02
56GO:0000325: plant-type vacuole3.08E-02
57GO:0031201: SNARE complex3.71E-02
58GO:0031977: thylakoid lumen3.71E-02
59GO:0090406: pollen tube3.93E-02
60GO:0005743: mitochondrial inner membrane4.48E-02
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Gene type



Gene DE type