co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G03140

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905615: positive regulation of developmental vegetative growth	0.00E+00
2	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
3	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
4	GO:0009451: RNA modification	1.14E-05
5	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	2.22E-04
6	GO:0010070: zygote asymmetric cell division	2.22E-04
7	GO:0090063: positive regulation of microtubule nucleation	2.22E-04
8	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	2.22E-04
9	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.31E-04
10	GO:0033566: gamma-tubulin complex localization	4.95E-04
11	GO:0010069: zygote asymmetric cytokinesis in embryo sac	4.95E-04
12	GO:0080175: phragmoplast microtubule organization	4.95E-04
13	GO:0010541: acropetal auxin transport	4.95E-04
14	GO:0043039: tRNA aminoacylation	4.95E-04
15	GO:0010540: basipetal auxin transport	6.86E-04
16	GO:0042780: tRNA 3'-end processing	8.05E-04
17	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	8.05E-04
18	GO:0009650: UV protection	1.15E-03
19	GO:1902290: positive regulation of defense response to oomycetes	1.15E-03
20	GO:0010116: positive regulation of abscisic acid biosynthetic process	1.15E-03
21	GO:0009956: radial pattern formation	1.53E-03
22	GO:0009616: virus induced gene silencing	1.95E-03
23	GO:0071493: cellular response to UV-B	1.95E-03
24	GO:0016558: protein import into peroxisome matrix	1.95E-03
25	GO:0051225: spindle assembly	1.95E-03
26	GO:0016567: protein ubiquitination	2.40E-03
27	GO:1901371: regulation of leaf morphogenesis	2.40E-03
28	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	2.40E-03
29	GO:0009959: negative gravitropism	2.40E-03
30	GO:0035194: posttranscriptional gene silencing by RNA	2.40E-03
31	GO:0009088: threonine biosynthetic process	2.89E-03
32	GO:0048444: floral organ morphogenesis	2.89E-03
33	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.89E-03
34	GO:1901001: negative regulation of response to salt stress	2.89E-03
35	GO:0019745: pentacyclic triterpenoid biosynthetic process	3.40E-03
36	GO:0006401: RNA catabolic process	3.40E-03
37	GO:0009610: response to symbiotic fungus	3.40E-03
38	GO:0007050: cell cycle arrest	3.40E-03
39	GO:0006468: protein phosphorylation	3.57E-03
40	GO:0009787: regulation of abscisic acid-activated signaling pathway	3.94E-03
41	GO:0034968: histone lysine methylation	3.94E-03
42	GO:0048564: photosystem I assembly	3.94E-03
43	GO:0045292: mRNA cis splicing, via spliceosome	3.94E-03
44	GO:0010052: guard cell differentiation	4.51E-03
45	GO:0051865: protein autoubiquitination	5.11E-03
46	GO:0000373: Group II intron splicing	5.11E-03
47	GO:0016571: histone methylation	5.74E-03
48	GO:0008202: steroid metabolic process	5.74E-03
49	GO:1900426: positive regulation of defense response to bacterium	5.74E-03
50	GO:0048829: root cap development	6.38E-03
51	GO:1903507: negative regulation of nucleic acid-templated transcription	7.06E-03
52	GO:0016485: protein processing	7.06E-03
53	GO:0048229: gametophyte development	7.06E-03
54	GO:0031347: regulation of defense response	8.40E-03
55	GO:0009718: anthocyanin-containing compound biosynthetic process	8.48E-03
56	GO:0009416: response to light stimulus	8.76E-03
57	GO:0009933: meristem structural organization	9.23E-03
58	GO:0009934: regulation of meristem structural organization	9.23E-03
59	GO:0009825: multidimensional cell growth	1.00E-02
60	GO:0080188: RNA-directed DNA methylation	1.00E-02
61	GO:0007010: cytoskeleton organization	1.16E-02
62	GO:0080147: root hair cell development	1.16E-02
63	GO:0006418: tRNA aminoacylation for protein translation	1.24E-02
64	GO:0051302: regulation of cell division	1.24E-02
65	GO:0006306: DNA methylation	1.33E-02
66	GO:0003333: amino acid transmembrane transport	1.33E-02
67	GO:0016226: iron-sulfur cluster assembly	1.42E-02
68	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.42E-02
69	GO:0006284: base-excision repair	1.60E-02
70	GO:0042127: regulation of cell proliferation	1.60E-02
71	GO:0000271: polysaccharide biosynthetic process	1.79E-02
72	GO:0010051: xylem and phloem pattern formation	1.79E-02
73	GO:0048653: anther development	1.79E-02
74	GO:0045489: pectin biosynthetic process	1.89E-02
75	GO:0010305: leaf vascular tissue pattern formation	1.89E-02
76	GO:0008360: regulation of cell shape	1.89E-02
77	GO:0009958: positive gravitropism	1.89E-02
78	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.19E-02
79	GO:0002229: defense response to oomycetes	2.19E-02
80	GO:0006635: fatty acid beta-oxidation	2.19E-02
81	GO:0080156: mitochondrial mRNA modification	2.19E-02
82	GO:0031047: gene silencing by RNA	2.30E-02
83	GO:0009630: gravitropism	2.30E-02
84	GO:0009734: auxin-activated signaling pathway	2.47E-02
85	GO:0009639: response to red or far red light	2.52E-02
86	GO:0010027: thylakoid membrane organization	2.85E-02
87	GO:0006974: cellular response to DNA damage stimulus	3.09E-02
88	GO:0006351: transcription, DNA-templated	3.15E-02
89	GO:0009793: embryo development ending in seed dormancy	3.19E-02
90	GO:0009832: plant-type cell wall biogenesis	3.57E-02
91	GO:0009658: chloroplast organization	3.58E-02
92	GO:0006865: amino acid transport	3.95E-02
93	GO:0016051: carbohydrate biosynthetic process	4.08E-02
94	GO:0080167: response to karrikin	4.42E-02
95	GO:0006897: endocytosis	4.61E-02
96	GO:0046777: protein autophosphorylation	4.73E-02
97	GO:0009926: auxin polar transport	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0098519: nucleotide phosphatase activity, acting on free nucleotides	0.00E+00
2	GO:0008859: exoribonuclease II activity	0.00E+00
3	GO:0016871: cycloartenol synthase activity	0.00E+00
4	GO:0004831: tyrosine-tRNA ligase activity	2.22E-04
5	GO:0004795: threonine synthase activity	2.22E-04
6	GO:0080062: cytokinin 9-beta-glucosyltransferase activity	2.22E-04
7	GO:0047807: cytokinin 7-beta-glucosyltransferase activity	2.22E-04
8	GO:0008327: methyl-CpG binding	4.69E-04
9	GO:0008805: carbon-monoxide oxygenase activity	4.95E-04
10	GO:0004047: aminomethyltransferase activity	4.95E-04
11	GO:0010428: methyl-CpNpG binding	8.05E-04
12	GO:0042781: 3'-tRNA processing endoribonuclease activity	8.05E-04
13	GO:0010429: methyl-CpNpN binding	8.05E-04
14	GO:0004519: endonuclease activity	9.39E-04
15	GO:0004540: ribonuclease activity	1.13E-03
16	GO:0010328: auxin influx transmembrane transporter activity	1.53E-03
17	GO:0008725: DNA-3-methyladenine glycosylase activity	1.95E-03
18	GO:0004462: lactoylglutathione lyase activity	2.40E-03
19	GO:0004674: protein serine/threonine kinase activity	2.81E-03
20	GO:0004871: signal transducer activity	2.86E-03
21	GO:0019899: enzyme binding	3.40E-03
22	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	4.51E-03
23	GO:0008142: oxysterol binding	4.51E-03
24	GO:0003724: RNA helicase activity	4.51E-03
25	GO:0004712: protein serine/threonine/tyrosine kinase activity	5.87E-03
26	GO:0004713: protein tyrosine kinase activity	6.38E-03
27	GO:0015020: glucuronosyltransferase activity	6.38E-03
28	GO:0005524: ATP binding	6.57E-03
29	GO:0000175: 3'-5'-exoribonuclease activity	8.48E-03
30	GO:0009982: pseudouridine synthase activity	8.48E-03
31	GO:0003723: RNA binding	9.02E-03
32	GO:0004535: poly(A)-specific ribonuclease activity	9.23E-03
33	GO:0003714: transcription corepressor activity	1.16E-02
34	GO:0004857: enzyme inhibitor activity	1.16E-02
35	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.22E-02
36	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.22E-02
37	GO:0016301: kinase activity	1.30E-02
38	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.42E-02
39	GO:0004672: protein kinase activity	1.48E-02
40	GO:0016758: transferase activity, transferring hexosyl groups	1.63E-02
41	GO:0018024: histone-lysine N-methyltransferase activity	1.70E-02
42	GO:0004812: aminoacyl-tRNA ligase activity	1.70E-02
43	GO:0008080: N-acetyltransferase activity	1.89E-02
44	GO:0019901: protein kinase binding	2.09E-02
45	GO:0008017: microtubule binding	2.42E-02
46	GO:0008194: UDP-glycosyltransferase activity	2.59E-02
47	GO:0008237: metallopeptidase activity	2.63E-02
48	GO:0004806: triglyceride lipase activity	3.20E-02
49	GO:0008236: serine-type peptidase activity	3.32E-02
50	GO:0008168: methyltransferase activity	3.45E-02
51	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.70E-02
52	GO:0004222: metalloendopeptidase activity	3.70E-02
53	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.82E-02
54	GO:0046983: protein dimerization activity	3.85E-02
55	GO:0016740: transferase activity	4.20E-02
56	GO:0042393: histone binding	4.47E-02
57	GO:0004185: serine-type carboxypeptidase activity	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0010370: perinucleolar chromocenter	2.22E-04
2	GO:0005819: spindle	7.67E-04
3	GO:0070652: HAUS complex	8.05E-04
4	GO:0000930: gamma-tubulin complex	1.53E-03
5	GO:0000178: exosome (RNase complex)	1.95E-03
6	GO:0010005: cortical microtubule, transverse to long axis	2.89E-03
7	GO:0043231: intracellular membrane-bounded organelle	4.25E-03
8	GO:0008180: COP9 signalosome	5.11E-03
9	GO:0000922: spindle pole	5.11E-03
10	GO:0005720: nuclear heterochromatin	5.11E-03
11	GO:0055028: cortical microtubule	6.38E-03
12	GO:0031977: thylakoid lumen	6.39E-03
13	GO:0005938: cell cortex	8.48E-03
14	GO:0000419: DNA-directed RNA polymerase V complex	1.08E-02
15	GO:0009507: chloroplast	1.20E-02
16	GO:0000775: chromosome, centromeric region	1.42E-02
17	GO:0009524: phragmoplast	1.77E-02
18	GO:0071944: cell periphery	2.41E-02
19	GO:0010319: stromule	2.63E-02
20	GO:0000932: P-body	2.85E-02
21	GO:0019005: SCF ubiquitin ligase complex	3.45E-02
22	GO:0005874: microtubule	4.28E-02
23	GO:0090406: pollen tube	4.88E-02