co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G02890

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019323: pentose catabolic process	0.00E+00
2	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
3	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
4	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
5	GO:0007638: mechanosensory behavior	0.00E+00
6	GO:0070125: mitochondrial translational elongation	0.00E+00
7	GO:0061157: mRNA destabilization	0.00E+00
8	GO:0002184: cytoplasmic translational termination	0.00E+00
9	GO:0040008: regulation of growth	5.21E-07
10	GO:0010020: chloroplast fission	3.50E-06
11	GO:0015995: chlorophyll biosynthetic process	9.20E-06
12	GO:0046739: transport of virus in multicellular host	4.63E-05
13	GO:0009733: response to auxin	1.11E-04
14	GO:0009742: brassinosteroid mediated signaling pathway	1.82E-04
15	GO:0042793: transcription from plastid promoter	1.84E-04
16	GO:0042372: phylloquinone biosynthetic process	2.49E-04
17	GO:0000025: maltose catabolic process	3.65E-04
18	GO:0005980: glycogen catabolic process	3.65E-04
19	GO:0030198: extracellular matrix organization	3.65E-04
20	GO:0070509: calcium ion import	3.65E-04
21	GO:0044262: cellular carbohydrate metabolic process	3.65E-04
22	GO:0010442: guard cell morphogenesis	3.65E-04
23	GO:0010480: microsporocyte differentiation	3.65E-04
24	GO:0042371: vitamin K biosynthetic process	3.65E-04
25	GO:1902458: positive regulation of stomatal opening	3.65E-04
26	GO:0015904: tetracycline transport	3.65E-04
27	GO:0046620: regulation of organ growth	4.05E-04
28	GO:0010497: plasmodesmata-mediated intercellular transport	4.96E-04
29	GO:0006779: porphyrin-containing compound biosynthetic process	7.02E-04
30	GO:0009638: phototropism	7.02E-04
31	GO:0009828: plant-type cell wall loosening	7.21E-04
32	GO:0019388: galactose catabolic process	7.94E-04
33	GO:0018026: peptidyl-lysine monomethylation	7.94E-04
34	GO:0009786: regulation of asymmetric cell division	7.94E-04
35	GO:0031648: protein destabilization	7.94E-04
36	GO:1903426: regulation of reactive oxygen species biosynthetic process	7.94E-04
37	GO:2000123: positive regulation of stomatal complex development	7.94E-04
38	GO:0010275: NAD(P)H dehydrogenase complex assembly	7.94E-04
39	GO:0052541: plant-type cell wall cellulose metabolic process	7.94E-04
40	GO:0006782: protoporphyrinogen IX biosynthetic process	8.18E-04
41	GO:0009641: shade avoidance	8.18E-04
42	GO:0010027: thylakoid membrane organization	8.99E-04
43	GO:0009658: chloroplast organization	1.01E-03
44	GO:0005983: starch catabolic process	1.07E-03
45	GO:2000012: regulation of auxin polar transport	1.22E-03
46	GO:0006006: glucose metabolic process	1.22E-03
47	GO:1902448: positive regulation of shade avoidance	1.29E-03
48	GO:0009734: auxin-activated signaling pathway	1.45E-03
49	GO:0070588: calcium ion transmembrane transport	1.53E-03
50	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.55E-03
51	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.85E-03
52	GO:0009647: skotomorphogenesis	1.85E-03
53	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.85E-03
54	GO:0010731: protein glutathionylation	1.85E-03
55	GO:0009590: detection of gravity	1.85E-03
56	GO:0043572: plastid fission	1.85E-03
57	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.85E-03
58	GO:0007231: osmosensory signaling pathway	1.85E-03
59	GO:0009102: biotin biosynthetic process	1.85E-03
60	GO:0006631: fatty acid metabolic process	2.11E-03
61	GO:0009640: photomorphogenesis	2.34E-03
62	GO:0022622: root system development	2.49E-03
63	GO:0033500: carbohydrate homeostasis	2.49E-03
64	GO:2000038: regulation of stomatal complex development	2.49E-03
65	GO:0009765: photosynthesis, light harvesting	2.49E-03
66	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.74E-03
67	GO:0016042: lipid catabolic process	2.77E-03
68	GO:0009664: plant-type cell wall organization	3.12E-03
69	GO:0010375: stomatal complex patterning	3.18E-03
70	GO:0000304: response to singlet oxygen	3.18E-03
71	GO:0016120: carotene biosynthetic process	3.18E-03
72	GO:0010236: plastoquinone biosynthetic process	3.18E-03
73	GO:0045038: protein import into chloroplast thylakoid membrane	3.18E-03
74	GO:0048497: maintenance of floral organ identity	3.18E-03
75	GO:0016123: xanthophyll biosynthetic process	3.18E-03
76	GO:0010305: leaf vascular tissue pattern formation	3.76E-03
77	GO:0016554: cytidine to uridine editing	3.93E-03
78	GO:0009913: epidermal cell differentiation	3.93E-03
79	GO:0018258: protein O-linked glycosylation via hydroxyproline	3.93E-03
80	GO:0033365: protein localization to organelle	3.93E-03
81	GO:0010405: arabinogalactan protein metabolic process	3.93E-03
82	GO:0009826: unidimensional cell growth	4.18E-03
83	GO:0017148: negative regulation of translation	4.74E-03
84	GO:0030488: tRNA methylation	4.74E-03
85	GO:0080086: stamen filament development	4.74E-03
86	GO:0032502: developmental process	4.96E-03
87	GO:0048437: floral organ development	5.60E-03
88	GO:0010444: guard mother cell differentiation	5.60E-03
89	GO:0015693: magnesium ion transport	5.60E-03
90	GO:0032880: regulation of protein localization	5.60E-03
91	GO:0048528: post-embryonic root development	5.60E-03
92	GO:0009772: photosynthetic electron transport in photosystem II	5.60E-03
93	GO:0005978: glycogen biosynthetic process	6.51E-03
94	GO:0001522: pseudouridine synthesis	6.51E-03
95	GO:2000070: regulation of response to water deprivation	6.51E-03
96	GO:0000105: histidine biosynthetic process	6.51E-03
97	GO:0009231: riboflavin biosynthetic process	6.51E-03
98	GO:0009793: embryo development ending in seed dormancy	7.17E-03
99	GO:0007186: G-protein coupled receptor signaling pathway	7.47E-03
100	GO:0032544: plastid translation	7.47E-03
101	GO:0015996: chlorophyll catabolic process	7.47E-03
102	GO:0051865: protein autoubiquitination	8.47E-03
103	GO:0048507: meristem development	8.47E-03
104	GO:0046916: cellular transition metal ion homeostasis	8.47E-03
105	GO:0009813: flavonoid biosynthetic process	9.24E-03
106	GO:1900865: chloroplast RNA modification	9.53E-03
107	GO:0009299: mRNA transcription	1.06E-02
108	GO:0048829: root cap development	1.06E-02
109	GO:0045036: protein targeting to chloroplast	1.06E-02
110	GO:0006949: syncytium formation	1.06E-02
111	GO:0006816: calcium ion transport	1.18E-02
112	GO:0009073: aromatic amino acid family biosynthetic process	1.18E-02
113	GO:0018119: peptidyl-cysteine S-nitrosylation	1.18E-02
114	GO:0048229: gametophyte development	1.18E-02
115	GO:0030001: metal ion transport	1.27E-02
116	GO:0045037: protein import into chloroplast stroma	1.30E-02
117	GO:0010588: cotyledon vascular tissue pattern formation	1.42E-02
118	GO:0010102: lateral root morphogenesis	1.42E-02
119	GO:0009785: blue light signaling pathway	1.42E-02
120	GO:0010628: positive regulation of gene expression	1.42E-02
121	GO:0050826: response to freezing	1.42E-02
122	GO:0010075: regulation of meristem growth	1.42E-02
123	GO:0009725: response to hormone	1.42E-02
124	GO:0009926: auxin polar transport	1.44E-02
125	GO:0010207: photosystem II assembly	1.55E-02
126	GO:0009266: response to temperature stimulus	1.55E-02
127	GO:0009934: regulation of meristem structural organization	1.55E-02
128	GO:0090351: seedling development	1.68E-02
129	GO:0010030: positive regulation of seed germination	1.68E-02
130	GO:0000162: tryptophan biosynthetic process	1.81E-02
131	GO:0006071: glycerol metabolic process	1.81E-02
132	GO:0010026: trichome differentiation	2.09E-02
133	GO:0031408: oxylipin biosynthetic process	2.24E-02
134	GO:0048511: rhythmic process	2.24E-02
135	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.38E-02
136	GO:0010082: regulation of root meristem growth	2.54E-02
137	GO:0009294: DNA mediated transformation	2.54E-02
138	GO:0009740: gibberellic acid mediated signaling pathway	2.62E-02
139	GO:0009416: response to light stimulus	2.62E-02
140	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.85E-02
141	GO:0008284: positive regulation of cell proliferation	2.85E-02
142	GO:0016117: carotenoid biosynthetic process	2.85E-02
143	GO:0042631: cellular response to water deprivation	3.01E-02
144	GO:0080022: primary root development	3.01E-02
145	GO:0000413: protein peptidyl-prolyl isomerization	3.01E-02
146	GO:0010087: phloem or xylem histogenesis	3.01E-02
147	GO:0048653: anther development	3.01E-02
148	GO:0045454: cell redox homeostasis	3.08E-02
149	GO:0009958: positive gravitropism	3.18E-02
150	GO:0006662: glycerol ether metabolic process	3.18E-02
151	GO:0010182: sugar mediated signaling pathway	3.18E-02
152	GO:0006508: proteolysis	3.28E-02
153	GO:0048544: recognition of pollen	3.35E-02
154	GO:0007018: microtubule-based movement	3.35E-02
155	GO:0042752: regulation of circadian rhythm	3.35E-02
156	GO:0048825: cotyledon development	3.52E-02
157	GO:0019252: starch biosynthetic process	3.52E-02
158	GO:0009058: biosynthetic process	3.66E-02
159	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.69E-02
160	GO:0007165: signal transduction	3.70E-02
161	GO:0010583: response to cyclopentenone	3.87E-02
162	GO:0016032: viral process	3.87E-02
163	GO:0006629: lipid metabolic process	3.99E-02
164	GO:0009790: embryo development	4.05E-02
165	GO:0009567: double fertilization forming a zygote and endosperm	4.23E-02
166	GO:0006633: fatty acid biosynthetic process	4.35E-02
167	GO:0009409: response to cold	4.40E-02
168	GO:0007267: cell-cell signaling	4.42E-02

Rank	GO Term	Adjusted P value
1	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
2	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
3	GO:0047661: amino-acid racemase activity	0.00E+00
4	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
5	GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity	0.00E+00
6	GO:0015267: channel activity	0.00E+00
7	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
8	GO:0005201: extracellular matrix structural constituent	0.00E+00
9	GO:0004076: biotin synthase activity	0.00E+00
10	GO:0005504: fatty acid binding	2.10E-05
11	GO:0043023: ribosomal large subunit binding	4.63E-05
12	GO:0045430: chalcone isomerase activity	8.19E-05
13	GO:0004176: ATP-dependent peptidase activity	2.20E-04
14	GO:0008184: glycogen phosphorylase activity	3.65E-04
15	GO:0050308: sugar-phosphatase activity	3.65E-04
16	GO:0004134: 4-alpha-glucanotransferase activity	3.65E-04
17	GO:0008835: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity	3.65E-04
18	GO:0004645: phosphorylase activity	3.65E-04
19	GO:0009374: biotin binding	3.65E-04
20	GO:0019203: carbohydrate phosphatase activity	3.65E-04
21	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	3.65E-04
22	GO:0050139: nicotinate-N-glucosyltransferase activity	3.65E-04
23	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	3.65E-04
24	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	3.65E-04
25	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	3.65E-04
26	GO:0008237: metallopeptidase activity	7.77E-04
27	GO:0004750: ribulose-phosphate 3-epimerase activity	7.94E-04
28	GO:0016630: protochlorophyllide reductase activity	7.94E-04
29	GO:0008493: tetracycline transporter activity	7.94E-04
30	GO:0004614: phosphoglucomutase activity	7.94E-04
31	GO:0043425: bHLH transcription factor binding	7.94E-04
32	GO:0031072: heat shock protein binding	1.22E-03
33	GO:0005262: calcium channel activity	1.22E-03
34	GO:0070330: aromatase activity	1.29E-03
35	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.29E-03
36	GO:0016805: dipeptidase activity	1.29E-03
37	GO:0004180: carboxypeptidase activity	1.29E-03
38	GO:0016851: magnesium chelatase activity	1.85E-03
39	GO:0001872: (1->3)-beta-D-glucan binding	1.85E-03
40	GO:0019199: transmembrane receptor protein kinase activity	2.49E-03
41	GO:0004659: prenyltransferase activity	2.49E-03
42	GO:0016279: protein-lysine N-methyltransferase activity	2.49E-03
43	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	2.49E-03
44	GO:0043621: protein self-association	2.58E-03
45	GO:0018685: alkane 1-monooxygenase activity	3.18E-03
46	GO:0003989: acetyl-CoA carboxylase activity	3.18E-03
47	GO:0003777: microtubule motor activity	3.89E-03
48	GO:0016208: AMP binding	3.93E-03
49	GO:2001070: starch binding	3.93E-03
50	GO:1990714: hydroxyproline O-galactosyltransferase activity	3.93E-03
51	GO:0051753: mannan synthase activity	4.74E-03
52	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	4.74E-03
53	GO:0051920: peroxiredoxin activity	4.74E-03
54	GO:0016209: antioxidant activity	6.51E-03
55	GO:0052689: carboxylic ester hydrolase activity	7.16E-03
56	GO:0046914: transition metal ion binding	7.47E-03
57	GO:0008889: glycerophosphodiester phosphodiesterase activity	8.47E-03
58	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	8.47E-03
59	GO:0004871: signal transducer activity	8.67E-03
60	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	8.79E-03
61	GO:0004222: metalloendopeptidase activity	9.70E-03
62	GO:0003746: translation elongation factor activity	1.12E-02
63	GO:0047372: acylglycerol lipase activity	1.18E-02
64	GO:0009055: electron carrier activity	1.24E-02
65	GO:0015266: protein channel activity	1.42E-02
66	GO:0015095: magnesium ion transmembrane transporter activity	1.42E-02
67	GO:0009982: pseudouridine synthase activity	1.42E-02
68	GO:0008083: growth factor activity	1.55E-02
69	GO:0008266: poly(U) RNA binding	1.55E-02
70	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.55E-02
71	GO:0035091: phosphatidylinositol binding	1.56E-02
72	GO:0046983: protein dimerization activity	1.61E-02
73	GO:0005198: structural molecule activity	1.62E-02
74	GO:0003712: transcription cofactor activity	1.68E-02
75	GO:0008146: sulfotransferase activity	1.68E-02
76	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.69E-02
77	GO:0016788: hydrolase activity, acting on ester bonds	1.92E-02
78	GO:0005528: FK506 binding	1.95E-02
79	GO:0051536: iron-sulfur cluster binding	1.95E-02
80	GO:0016298: lipase activity	2.02E-02
81	GO:0043424: protein histidine kinase binding	2.09E-02
82	GO:0033612: receptor serine/threonine kinase binding	2.24E-02
83	GO:0005515: protein binding	2.40E-02
84	GO:0004650: polygalacturonase activity	2.54E-02
85	GO:0030570: pectate lyase activity	2.54E-02
86	GO:0003756: protein disulfide isomerase activity	2.69E-02
87	GO:0003727: single-stranded RNA binding	2.69E-02
88	GO:0051082: unfolded protein binding	2.78E-02
89	GO:0047134: protein-disulfide reductase activity	2.85E-02
90	GO:0015035: protein disulfide oxidoreductase activity	2.86E-02
91	GO:0001085: RNA polymerase II transcription factor binding	3.18E-02
92	GO:0042803: protein homodimerization activity	3.26E-02
93	GO:0004791: thioredoxin-disulfide reductase activity	3.35E-02
94	GO:0019901: protein kinase binding	3.52E-02
95	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.57E-02
96	GO:0016829: lyase activity	3.76E-02
97	GO:0030170: pyridoxal phosphate binding	3.85E-02
98	GO:0004518: nuclease activity	3.87E-02
99	GO:0004674: protein serine/threonine kinase activity	3.92E-02
100	GO:0003924: GTPase activity	3.99E-02
101	GO:0000156: phosphorelay response regulator activity	4.05E-02
102	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.05E-02
103	GO:0005507: copper ion binding	4.38E-02
104	GO:0008483: transaminase activity	4.42E-02
105	GO:0005200: structural constituent of cytoskeleton	4.42E-02
106	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.46E-02
107	GO:0016597: amino acid binding	4.61E-02
108	GO:0008017: microtubule binding	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	2.75E-14
2	GO:0009941: chloroplast envelope	2.39E-13
3	GO:0009570: chloroplast stroma	1.30E-12
4	GO:0009534: chloroplast thylakoid	1.70E-08
5	GO:0009508: plastid chromosome	2.63E-06
6	GO:0009295: nucleoid	7.93E-05
7	GO:0010319: stromule	7.93E-05
8	GO:0046658: anchored component of plasma membrane	1.45E-04
9	GO:0005886: plasma membrane	5.10E-04
10	GO:0031357: integral component of chloroplast inner membrane	7.94E-04
11	GO:0000427: plastid-encoded plastid RNA polymerase complex	7.94E-04
12	GO:0009707: chloroplast outer membrane	1.25E-03
13	GO:0009528: plastid inner membrane	1.29E-03
14	GO:0010007: magnesium chelatase complex	1.29E-03
15	GO:0030139: endocytic vesicle	1.29E-03
16	GO:0009317: acetyl-CoA carboxylase complex	1.29E-03
17	GO:0031969: chloroplast membrane	1.46E-03
18	GO:0009536: plastid	1.59E-03
19	GO:0031225: anchored component of membrane	1.72E-03
20	GO:0032585: multivesicular body membrane	1.85E-03
21	GO:0009532: plastid stroma	2.30E-03
22	GO:0009535: chloroplast thylakoid membrane	2.48E-03
23	GO:0009527: plastid outer membrane	2.49E-03
24	GO:0009986: cell surface	5.60E-03
25	GO:0009533: chloroplast stromal thylakoid	5.60E-03
26	GO:0009501: amyloplast	6.51E-03
27	GO:0009579: thylakoid	1.09E-02
28	GO:0090404: pollen tube tip	1.18E-02
29	GO:0043234: protein complex	1.81E-02
30	GO:0042651: thylakoid membrane	2.09E-02
31	GO:0005874: microtubule	2.36E-02
32	GO:0015629: actin cytoskeleton	2.54E-02
33	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.69E-02
34	GO:0009706: chloroplast inner membrane	2.78E-02
35	GO:0005871: kinesin complex	2.85E-02
36	GO:0005576: extracellular region	3.44E-02
37	GO:0009543: chloroplast thylakoid lumen	3.48E-02
38	GO:0005778: peroxisomal membrane	4.42E-02
39	GO:0030529: intracellular ribonucleoprotein complex	4.80E-02