Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G02250

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1905615: positive regulation of developmental vegetative growth0.00E+00
2GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA0.00E+00
3GO:0009451: RNA modification3.04E-05
4GO:0010480: microsporocyte differentiation1.44E-04
5GO:0010729: positive regulation of hydrogen peroxide biosynthetic process1.44E-04
6GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic1.44E-04
7GO:0009220: pyrimidine ribonucleotide biosynthetic process3.29E-04
8GO:0048255: mRNA stabilization3.29E-04
9GO:0080175: phragmoplast microtubule organization3.29E-04
10GO:0009934: regulation of meristem structural organization3.77E-04
11GO:0042780: tRNA 3'-end processing5.40E-04
12GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic5.40E-04
13GO:0006013: mannose metabolic process5.40E-04
14GO:0006468: protein phosphorylation6.22E-04
15GO:0009650: UV protection7.73E-04
16GO:0010116: positive regulation of abscisic acid biosynthetic process7.73E-04
17GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway8.40E-04
18GO:0048653: anther development9.45E-04
19GO:0044205: 'de novo' UMP biosynthetic process1.02E-03
20GO:0002229: defense response to oomycetes1.24E-03
21GO:0016558: protein import into peroxisome matrix1.29E-03
22GO:0051225: spindle assembly1.29E-03
23GO:0009616: virus induced gene silencing1.29E-03
24GO:0071493: cellular response to UV-B1.29E-03
25GO:0009913: epidermal cell differentiation1.59E-03
26GO:0009959: negative gravitropism1.59E-03
27GO:0035194: posttranscriptional gene silencing by RNA1.59E-03
28GO:1901371: regulation of leaf morphogenesis1.59E-03
29GO:0048444: floral organ morphogenesis1.91E-03
30GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity1.91E-03
31GO:1901001: negative regulation of response to salt stress1.91E-03
32GO:0009610: response to symbiotic fungus2.24E-03
33GO:0048437: floral organ development2.24E-03
34GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process2.24E-03
35GO:0034968: histone lysine methylation2.60E-03
36GO:0009787: regulation of abscisic acid-activated signaling pathway2.60E-03
37GO:0010052: guard cell differentiation2.96E-03
38GO:0006002: fructose 6-phosphate metabolic process2.96E-03
39GO:0016571: histone methylation3.76E-03
40GO:0008202: steroid metabolic process3.76E-03
41GO:0016485: protein processing4.61E-03
42GO:0048229: gametophyte development4.61E-03
43GO:0009718: anthocyanin-containing compound biosynthetic process5.52E-03
44GO:0010075: regulation of meristem growth5.52E-03
45GO:0080188: RNA-directed DNA methylation6.50E-03
46GO:0080147: root hair cell development7.52E-03
47GO:0009116: nucleoside metabolic process7.52E-03
48GO:0007010: cytoskeleton organization7.52E-03
49GO:0051302: regulation of cell division8.06E-03
50GO:0043622: cortical microtubule organization8.06E-03
51GO:0007017: microtubule-based process8.06E-03
52GO:0006306: DNA methylation8.61E-03
53GO:0016226: iron-sulfur cluster assembly9.17E-03
54GO:0010082: regulation of root meristem growth9.75E-03
55GO:0009693: ethylene biosynthetic process9.75E-03
56GO:0006284: base-excision repair1.03E-02
57GO:0016036: cellular response to phosphate starvation1.16E-02
58GO:0000271: polysaccharide biosynthetic process1.16E-02
59GO:0010051: xylem and phloem pattern formation1.16E-02
60GO:0008360: regulation of cell shape1.22E-02
61GO:0009958: positive gravitropism1.22E-02
62GO:0048868: pollen tube development1.22E-02
63GO:0009741: response to brassinosteroid1.22E-02
64GO:0045489: pectin biosynthetic process1.22E-02
65GO:0006635: fatty acid beta-oxidation1.41E-02
66GO:0048510: regulation of timing of transition from vegetative to reproductive phase1.41E-02
67GO:0031047: gene silencing by RNA1.48E-02
68GO:0009416: response to light stimulus1.51E-02
69GO:0009639: response to red or far red light1.62E-02
70GO:0008219: cell death2.22E-02
71GO:0009832: plant-type cell wall biogenesis2.30E-02
72GO:0000160: phosphorelay signal transduction system2.30E-02
73GO:0016051: carbohydrate biosynthetic process2.63E-02
74GO:0009853: photorespiration2.63E-02
75GO:0006897: endocytosis2.97E-02
76GO:0016042: lipid catabolic process3.43E-02
77GO:0009793: embryo development ending in seed dormancy3.47E-02
78GO:0006629: lipid metabolic process3.53E-02
79GO:0006260: DNA replication3.60E-02
80GO:0009736: cytokinin-activated signaling pathway3.89E-02
81GO:0008152: metabolic process3.89E-02
82GO:0051603: proteolysis involved in cellular protein catabolic process3.98E-02
83GO:0006096: glycolytic process4.38E-02
84GO:0043086: negative regulation of catalytic activity4.38E-02
85GO:0009553: embryo sac development4.89E-02
RankGO TermAdjusted P value
1GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
2GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
3GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity0.00E+00
4GO:0080062: cytokinin 9-beta-glucosyltransferase activity1.44E-04
5GO:0017091: AU-rich element binding1.44E-04
6GO:0047807: cytokinin 7-beta-glucosyltransferase activity1.44E-04
7GO:0004047: aminomethyltransferase activity3.29E-04
8GO:0010429: methyl-CpNpN binding5.40E-04
9GO:0010428: methyl-CpNpG binding5.40E-04
10GO:0042781: 3'-tRNA processing endoribonuclease activity5.40E-04
11GO:0004674: protein serine/threonine kinase activity5.51E-04
12GO:0008725: DNA-3-methyladenine glycosylase activity1.29E-03
13GO:0004672: protein kinase activity1.36E-03
14GO:0005524: ATP binding1.75E-03
15GO:0004559: alpha-mannosidase activity1.91E-03
16GO:0004806: triglyceride lipase activity2.09E-03
17GO:0003872: 6-phosphofructokinase activity2.24E-03
18GO:0008142: oxysterol binding2.96E-03
19GO:0003724: RNA helicase activity2.96E-03
20GO:0008970: phosphatidylcholine 1-acylhydrolase activity2.96E-03
21GO:0003676: nucleic acid binding3.42E-03
22GO:0015020: glucuronosyltransferase activity4.18E-03
23GO:0008327: methyl-CpG binding4.61E-03
24GO:0016301: kinase activity5.23E-03
25GO:0009982: pseudouridine synthase activity5.52E-03
26GO:0004871: signal transducer activity5.93E-03
27GO:0004535: poly(A)-specific ribonuclease activity6.00E-03
28GO:0080043: quercetin 3-O-glucosyltransferase activity6.56E-03
29GO:0080044: quercetin 7-O-glucosyltransferase activity6.56E-03
30GO:0004857: enzyme inhibitor activity7.52E-03
31GO:0004519: endonuclease activity8.12E-03
32GO:0033612: receptor serine/threonine kinase binding8.61E-03
33GO:0004540: ribonuclease activity8.61E-03
34GO:0016758: transferase activity, transferring hexosyl groups8.75E-03
35GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity9.17E-03
36GO:0018024: histone-lysine N-methyltransferase activity1.09E-02
37GO:0008080: N-acetyltransferase activity1.22E-02
38GO:0008017: microtubule binding1.30E-02
39GO:0003723: RNA binding1.35E-02
40GO:0019901: protein kinase binding1.35E-02
41GO:0008194: UDP-glycosyltransferase activity1.39E-02
42GO:0000156: phosphorelay response regulator activity1.55E-02
43GO:0008237: metallopeptidase activity1.69E-02
44GO:0004693: cyclin-dependent protein serine/threonine kinase activity2.38E-02
45GO:0004222: metalloendopeptidase activity2.38E-02
46GO:0004712: protein serine/threonine/tyrosine kinase activity2.80E-02
47GO:0042393: histone binding2.88E-02
48GO:0004185: serine-type carboxypeptidase activity3.15E-02
49GO:0043621: protein self-association3.33E-02
50GO:0035091: phosphatidylinositol binding3.33E-02
51GO:0003777: microtubule motor activity4.18E-02
52GO:0003677: DNA binding4.36E-02
53GO:0051082: unfolded protein binding4.99E-02
RankGO TermAdjusted P value
1GO:0005819: spindle3.51E-04
2GO:0070652: HAUS complex5.40E-04
3GO:0005945: 6-phosphofructokinase complex1.29E-03
4GO:0010005: cortical microtubule, transverse to long axis1.91E-03
5GO:0055028: cortical microtubule4.18E-03
6GO:0000419: DNA-directed RNA polymerase V complex7.00E-03
7GO:0045271: respiratory chain complex I8.06E-03
8GO:0043231: intracellular membrane-bounded organelle8.26E-03
9GO:0000775: chromosome, centromeric region9.17E-03
10GO:0009524: phragmoplast9.48E-03
11GO:0071944: cell periphery1.55E-02
12GO:0005874: microtubule2.31E-02
13GO:0031966: mitochondrial membrane3.70E-02
14GO:0005773: vacuole4.47E-02
15GO:0005747: mitochondrial respiratory chain complex I4.48E-02
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Gene type



Gene DE type