co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G01960

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2001253: regulation of histone H3-K36 trimethylation	0.00E+00
2	GO:0018063: cytochrome c-heme linkage	0.00E+00
3	GO:0001789: G-protein coupled receptor signaling pathway, coupled to S1P second messenger	0.00E+00
4	GO:0010793: regulation of mRNA export from nucleus	0.00E+00
5	GO:0071985: multivesicular body sorting pathway	0.00E+00
6	GO:0009407: toxin catabolic process	1.40E-05
7	GO:0010600: regulation of auxin biosynthetic process	1.59E-05
8	GO:0000162: tryptophan biosynthetic process	1.71E-05
9	GO:0009617: response to bacterium	3.94E-05
10	GO:1900057: positive regulation of leaf senescence	7.34E-05
11	GO:0009851: auxin biosynthetic process	7.76E-05
12	GO:0010230: alternative respiration	1.40E-04
13	GO:0042964: thioredoxin reduction	1.40E-04
14	GO:0010482: regulation of epidermal cell division	1.40E-04
15	GO:1900384: regulation of flavonol biosynthetic process	1.40E-04
16	GO:0010311: lateral root formation	2.30E-04
17	GO:0015865: purine nucleotide transport	3.20E-04
18	GO:1902000: homogentisate catabolic process	3.20E-04
19	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	3.20E-04
20	GO:0051252: regulation of RNA metabolic process	3.20E-04
21	GO:0050684: regulation of mRNA processing	3.20E-04
22	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	5.26E-04
23	GO:0002230: positive regulation of defense response to virus by host	5.26E-04
24	GO:0032784: regulation of DNA-templated transcription, elongation	5.26E-04
25	GO:0010366: negative regulation of ethylene biosynthetic process	5.26E-04
26	GO:0009072: aromatic amino acid family metabolic process	5.26E-04
27	GO:0046902: regulation of mitochondrial membrane permeability	7.53E-04
28	GO:1902290: positive regulation of defense response to oomycetes	7.53E-04
29	GO:0006020: inositol metabolic process	7.53E-04
30	GO:0006571: tyrosine biosynthetic process	7.53E-04
31	GO:0006621: protein retention in ER lumen	9.98E-04
32	GO:0051567: histone H3-K9 methylation	9.98E-04
33	GO:0010188: response to microbial phytotoxin	9.98E-04
34	GO:0006878: cellular copper ion homeostasis	9.98E-04
35	GO:0006891: intra-Golgi vesicle-mediated transport	1.20E-03
36	GO:0046283: anthocyanin-containing compound metabolic process	1.26E-03
37	GO:0006564: L-serine biosynthetic process	1.26E-03
38	GO:0031365: N-terminal protein amino acid modification	1.26E-03
39	GO:0050832: defense response to fungus	1.53E-03
40	GO:0002238: response to molecule of fungal origin	1.55E-03
41	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.86E-03
42	GO:0009094: L-phenylalanine biosynthetic process	1.86E-03
43	GO:0050829: defense response to Gram-negative bacterium	2.18E-03
44	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	2.52E-03
45	GO:0043068: positive regulation of programmed cell death	2.52E-03
46	GO:0007186: G-protein coupled receptor signaling pathway	2.88E-03
47	GO:0010497: plasmodesmata-mediated intercellular transport	2.88E-03
48	GO:0019430: removal of superoxide radicals	2.88E-03
49	GO:0006997: nucleus organization	2.88E-03
50	GO:0017004: cytochrome complex assembly	2.88E-03
51	GO:0051865: protein autoubiquitination	3.26E-03
52	GO:0010112: regulation of systemic acquired resistance	3.26E-03
53	GO:0046685: response to arsenic-containing substance	3.26E-03
54	GO:0015031: protein transport	3.63E-03
55	GO:2000280: regulation of root development	3.65E-03
56	GO:1900426: positive regulation of defense response to bacterium	3.65E-03
57	GO:0009636: response to toxic substance	4.05E-03
58	GO:0052544: defense response by callose deposition in cell wall	4.48E-03
59	GO:0072593: reactive oxygen species metabolic process	4.48E-03
60	GO:0048765: root hair cell differentiation	4.48E-03
61	GO:0012501: programmed cell death	4.92E-03
62	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	4.92E-03
63	GO:0045454: cell redox homeostasis	5.31E-03
64	GO:0006417: regulation of translation	5.37E-03
65	GO:0010102: lateral root morphogenesis	5.37E-03
66	GO:0009785: blue light signaling pathway	5.37E-03
67	GO:0006541: glutamine metabolic process	5.84E-03
68	GO:0002237: response to molecule of bacterial origin	5.84E-03
69	GO:0009620: response to fungus	6.30E-03
70	GO:0090351: seedling development	6.32E-03
71	GO:0007033: vacuole organization	6.32E-03
72	GO:0009225: nucleotide-sugar metabolic process	6.32E-03
73	GO:0006629: lipid metabolic process	6.93E-03
74	GO:0080147: root hair cell development	7.32E-03
75	GO:0006874: cellular calcium ion homeostasis	7.84E-03
76	GO:0010026: trichome differentiation	7.84E-03
77	GO:0043622: cortical microtubule organization	7.84E-03
78	GO:0051302: regulation of cell division	7.84E-03
79	GO:0008152: metabolic process	7.85E-03
80	GO:0016998: cell wall macromolecule catabolic process	8.38E-03
81	GO:0042742: defense response to bacterium	9.37E-03
82	GO:0071215: cellular response to abscisic acid stimulus	9.48E-03
83	GO:0042127: regulation of cell proliferation	1.01E-02
84	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.06E-02
85	GO:0042147: retrograde transport, endosome to Golgi	1.06E-02
86	GO:0042391: regulation of membrane potential	1.12E-02
87	GO:0006662: glycerol ether metabolic process	1.18E-02
88	GO:0048868: pollen tube development	1.18E-02
89	GO:0010150: leaf senescence	1.19E-02
90	GO:0048544: recognition of pollen	1.25E-02
91	GO:0006814: sodium ion transport	1.25E-02
92	GO:0006623: protein targeting to vacuole	1.31E-02
93	GO:0009749: response to glucose	1.31E-02
94	GO:0000302: response to reactive oxygen species	1.37E-02
95	GO:0009630: gravitropism	1.44E-02
96	GO:0051607: defense response to virus	1.71E-02
97	GO:0010027: thylakoid membrane organization	1.79E-02
98	GO:0009615: response to virus	1.79E-02
99	GO:0046686: response to cadmium ion	1.83E-02
100	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.86E-02
101	GO:0006974: cellular response to DNA damage stimulus	1.93E-02
102	GO:0009627: systemic acquired resistance	1.93E-02
103	GO:0006888: ER to Golgi vesicle-mediated transport	2.00E-02
104	GO:0016049: cell growth	2.08E-02
105	GO:0009723: response to ethylene	2.14E-02
106	GO:0009817: defense response to fungus, incompatible interaction	2.16E-02
107	GO:0008219: cell death	2.16E-02
108	GO:0006499: N-terminal protein myristoylation	2.31E-02
109	GO:0010200: response to chitin	2.38E-02
110	GO:0010119: regulation of stomatal movement	2.39E-02
111	GO:0010043: response to zinc ion	2.39E-02
112	GO:0007568: aging	2.39E-02
113	GO:0034599: cellular response to oxidative stress	2.63E-02
114	GO:0006099: tricarboxylic acid cycle	2.63E-02
115	GO:0006839: mitochondrial transport	2.80E-02
116	GO:0006886: intracellular protein transport	2.84E-02
117	GO:0042542: response to hydrogen peroxide	2.97E-02
118	GO:0051707: response to other organism	3.06E-02
119	GO:0042546: cell wall biogenesis	3.14E-02
120	GO:0009965: leaf morphogenesis	3.32E-02
121	GO:0009751: response to salicylic acid	3.34E-02
122	GO:0031347: regulation of defense response	3.50E-02
123	GO:0006979: response to oxidative stress	3.52E-02
124	GO:0016310: phosphorylation	3.56E-02
125	GO:0006812: cation transport	3.59E-02
126	GO:0009846: pollen germination	3.59E-02
127	GO:0006813: potassium ion transport	3.78E-02
128	GO:0009736: cytokinin-activated signaling pathway	3.78E-02
129	GO:0009909: regulation of flower development	4.06E-02
130	GO:0048316: seed development	4.35E-02
131	GO:0006952: defense response	4.50E-02
132	GO:0016569: covalent chromatin modification	4.65E-02
133	GO:0009740: gibberellic acid mediated signaling pathway	4.65E-02
134	GO:0042545: cell wall modification	4.75E-02
135	GO:0009734: auxin-activated signaling pathway	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0051670: inulinase activity	0.00E+00
2	GO:0016247: channel regulator activity	0.00E+00
3	GO:0005095: GTPase inhibitor activity	0.00E+00
4	GO:0016034: maleylacetoacetate isomerase activity	0.00E+00
5	GO:0004049: anthranilate synthase activity	3.63E-06
6	GO:0004364: glutathione transferase activity	2.88E-05
7	GO:0051669: fructan beta-fructosidase activity	1.40E-04
8	GO:0032266: phosphatidylinositol-3-phosphate binding	1.40E-04
9	GO:0047940: glucuronokinase activity	1.40E-04
10	GO:0031219: levanase activity	1.40E-04
11	GO:2001147: camalexin binding	1.40E-04
12	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	1.40E-04
13	GO:0004649: poly(ADP-ribose) glycohydrolase activity	1.40E-04
14	GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity	1.40E-04
15	GO:2001227: quercitrin binding	1.40E-04
16	GO:0033984: indole-3-glycerol-phosphate lyase activity	1.40E-04
17	GO:0004806: triglyceride lipase activity	1.86E-04
18	GO:0008428: ribonuclease inhibitor activity	3.20E-04
19	GO:0019172: glyoxalase III activity	3.20E-04
20	GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity	3.20E-04
21	GO:0043169: cation binding	5.26E-04
22	GO:0031683: G-protein beta/gamma-subunit complex binding	5.26E-04
23	GO:0001664: G-protein coupled receptor binding	5.26E-04
24	GO:0005432: calcium:sodium antiporter activity	7.53E-04
25	GO:0010178: IAA-amino acid conjugate hydrolase activity	7.53E-04
26	GO:0046923: ER retention sequence binding	9.98E-04
27	GO:0050378: UDP-glucuronate 4-epimerase activity	9.98E-04
28	GO:0004834: tryptophan synthase activity	9.98E-04
29	GO:0004791: thioredoxin-disulfide reductase activity	1.05E-03
30	GO:0008948: oxaloacetate decarboxylase activity	1.26E-03
31	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.26E-03
32	GO:0005471: ATP:ADP antiporter activity	1.26E-03
33	GO:0008200: ion channel inhibitor activity	1.55E-03
34	GO:0004602: glutathione peroxidase activity	1.86E-03
35	GO:0004656: procollagen-proline 4-dioxygenase activity	1.86E-03
36	GO:0051020: GTPase binding	1.86E-03
37	GO:0051920: peroxiredoxin activity	1.86E-03
38	GO:0005509: calcium ion binding	2.07E-03
39	GO:0043295: glutathione binding	2.18E-03
40	GO:0008235: metalloexopeptidase activity	2.18E-03
41	GO:0015491: cation:cation antiporter activity	2.52E-03
42	GO:0016209: antioxidant activity	2.52E-03
43	GO:0004601: peroxidase activity	3.22E-03
44	GO:0004177: aminopeptidase activity	4.48E-03
45	GO:0031072: heat shock protein binding	5.37E-03
46	GO:0004871: signal transducer activity	5.64E-03
47	GO:0008266: poly(U) RNA binding	5.84E-03
48	GO:0005217: intracellular ligand-gated ion channel activity	6.32E-03
49	GO:0004970: ionotropic glutamate receptor activity	6.32E-03
50	GO:0030552: cAMP binding	6.32E-03
51	GO:0004867: serine-type endopeptidase inhibitor activity	6.32E-03
52	GO:0030553: cGMP binding	6.32E-03
53	GO:0003924: GTPase activity	6.93E-03
54	GO:0016746: transferase activity, transferring acyl groups	7.10E-03
55	GO:0015035: protein disulfide oxidoreductase activity	7.10E-03
56	GO:0043130: ubiquitin binding	7.32E-03
57	GO:0005216: ion channel activity	7.84E-03
58	GO:0004499: N,N-dimethylaniline monooxygenase activity	1.01E-02
59	GO:0047134: protein-disulfide reductase activity	1.06E-02
60	GO:0030551: cyclic nucleotide binding	1.12E-02
61	GO:0005249: voltage-gated potassium channel activity	1.12E-02
62	GO:0016301: kinase activity	1.14E-02
63	GO:0050662: coenzyme binding	1.25E-02
64	GO:0004872: receptor activity	1.31E-02
65	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.51E-02
66	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.64E-02
67	GO:0008237: metallopeptidase activity	1.64E-02
68	GO:0046872: metal ion binding	1.71E-02
69	GO:0030247: polysaccharide binding	2.00E-02
70	GO:0004683: calmodulin-dependent protein kinase activity	2.00E-02
71	GO:0030145: manganese ion binding	2.39E-02
72	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.55E-02
73	GO:0005525: GTP binding	2.69E-02
74	GO:0042393: histone binding	2.80E-02
75	GO:0050661: NADP binding	2.80E-02
76	GO:0016787: hydrolase activity	2.92E-02
77	GO:0005198: structural molecule activity	3.32E-02
78	GO:0004674: protein serine/threonine kinase activity	3.70E-02
79	GO:0016298: lipase activity	3.87E-02
80	GO:0003824: catalytic activity	3.90E-02
81	GO:0045330: aspartyl esterase activity	4.06E-02
82	GO:0045735: nutrient reservoir activity	4.26E-02
83	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.55E-02
84	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.55E-02
85	GO:0030599: pectinesterase activity	4.65E-02
86	GO:0051082: unfolded protein binding	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0005950: anthranilate synthase complex	9.68E-07
2	GO:0045252: oxoglutarate dehydrogenase complex	1.40E-04
3	GO:0000814: ESCRT II complex	3.20E-04
4	GO:0031965: nuclear membrane	1.12E-03
5	GO:0000164: protein phosphatase type 1 complex	1.26E-03
6	GO:0017119: Golgi transport complex	4.06E-03
7	GO:0005789: endoplasmic reticulum membrane	5.01E-03
8	GO:0005794: Golgi apparatus	5.58E-03
9	GO:0005795: Golgi stack	6.32E-03
10	GO:0005769: early endosome	6.81E-03
11	GO:0005770: late endosome	1.18E-02
12	GO:0009504: cell plate	1.31E-02
13	GO:0019898: extrinsic component of membrane	1.31E-02
14	GO:0071944: cell periphery	1.51E-02
15	GO:0032580: Golgi cisterna membrane	1.58E-02
16	GO:0005788: endoplasmic reticulum lumen	1.86E-02
17	GO:0048046: apoplast	2.24E-02
18	GO:0005802: trans-Golgi network	2.60E-02
19	GO:0005886: plasma membrane	2.87E-02
20	GO:0005768: endosome	3.05E-02
21	GO:0005743: mitochondrial inner membrane	3.16E-02
22	GO:0005635: nuclear envelope	3.97E-02
23	GO:0005834: heterotrimeric G-protein complex	4.45E-02
24	GO:0005887: integral component of plasma membrane	4.59E-02
25	GO:0009505: plant-type cell wall	4.59E-02