co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G01590

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080127: fruit septum development	0.00E+00
2	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
3	GO:2000505: regulation of energy homeostasis	0.00E+00
4	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
5	GO:0010582: floral meristem determinacy	2.88E-05
6	GO:0010080: regulation of floral meristem growth	2.48E-04
7	GO:0043087: regulation of GTPase activity	2.48E-04
8	GO:0043609: regulation of carbon utilization	2.48E-04
9	GO:0006436: tryptophanyl-tRNA aminoacylation	2.48E-04
10	GO:0051013: microtubule severing	2.48E-04
11	GO:0034757: negative regulation of iron ion transport	2.48E-04
12	GO:0000373: Group II intron splicing	3.41E-04
13	GO:0009734: auxin-activated signaling pathway	4.67E-04
14	GO:0010271: regulation of chlorophyll catabolic process	5.49E-04
15	GO:0001736: establishment of planar polarity	5.49E-04
16	GO:0010024: phytochromobilin biosynthetic process	5.49E-04
17	GO:0048255: mRNA stabilization	5.49E-04
18	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	5.73E-04
19	GO:0045037: protein import into chloroplast stroma	6.25E-04
20	GO:0010022: meristem determinacy	8.92E-04
21	GO:0080117: secondary growth	8.92E-04
22	GO:0051604: protein maturation	8.92E-04
23	GO:0030029: actin filament-based process	8.92E-04
24	GO:0006000: fructose metabolic process	8.92E-04
25	GO:0051017: actin filament bundle assembly	1.09E-03
26	GO:0009733: response to auxin	1.12E-03
27	GO:0009926: auxin polar transport	1.14E-03
28	GO:0009744: response to sucrose	1.14E-03
29	GO:2000904: regulation of starch metabolic process	1.27E-03
30	GO:0051513: regulation of monopolar cell growth	1.27E-03
31	GO:0051639: actin filament network formation	1.27E-03
32	GO:0034059: response to anoxia	1.27E-03
33	GO:0010239: chloroplast mRNA processing	1.27E-03
34	GO:0044211: CTP salvage	1.27E-03
35	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.57E-03
36	GO:0044206: UMP salvage	1.70E-03
37	GO:0051781: positive regulation of cell division	1.70E-03
38	GO:0051764: actin crosslink formation	1.70E-03
39	GO:0006096: glycolytic process	2.06E-03
40	GO:0048316: seed development	2.14E-03
41	GO:0009958: positive gravitropism	2.15E-03
42	GO:0080110: sporopollenin biosynthetic process	2.17E-03
43	GO:0010236: plastoquinone biosynthetic process	2.17E-03
44	GO:0048497: maintenance of floral organ identity	2.17E-03
45	GO:0009107: lipoate biosynthetic process	2.17E-03
46	GO:0010158: abaxial cell fate specification	2.17E-03
47	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	2.67E-03
48	GO:0006206: pyrimidine nucleobase metabolic process	2.67E-03
49	GO:0009913: epidermal cell differentiation	2.67E-03
50	GO:0048831: regulation of shoot system development	2.67E-03
51	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.67E-03
52	GO:0003006: developmental process involved in reproduction	2.67E-03
53	GO:0006555: methionine metabolic process	2.67E-03
54	GO:0016554: cytidine to uridine editing	2.67E-03
55	GO:0010583: response to cyclopentenone	2.82E-03
56	GO:0009828: plant-type cell wall loosening	3.20E-03
57	GO:1901259: chloroplast rRNA processing	3.21E-03
58	GO:0009942: longitudinal axis specification	3.21E-03
59	GO:0048509: regulation of meristem development	3.21E-03
60	GO:0030488: tRNA methylation	3.21E-03
61	GO:0010019: chloroplast-nucleus signaling pathway	3.21E-03
62	GO:0000082: G1/S transition of mitotic cell cycle	3.79E-03
63	GO:0010444: guard mother cell differentiation	3.79E-03
64	GO:0009610: response to symbiotic fungus	3.79E-03
65	GO:0006955: immune response	3.79E-03
66	GO:0010050: vegetative phase change	3.79E-03
67	GO:0046620: regulation of organ growth	4.39E-03
68	GO:0006353: DNA-templated transcription, termination	4.39E-03
69	GO:0006875: cellular metal ion homeostasis	4.39E-03
70	GO:0009850: auxin metabolic process	4.39E-03
71	GO:0010411: xyloglucan metabolic process	4.49E-03
72	GO:0010497: plasmodesmata-mediated intercellular transport	5.03E-03
73	GO:0009657: plastid organization	5.03E-03
74	GO:0007389: pattern specification process	5.03E-03
75	GO:0006002: fructose 6-phosphate metabolic process	5.03E-03
76	GO:0007186: G-protein coupled receptor signaling pathway	5.03E-03
77	GO:0000160: phosphorelay signal transduction system	5.22E-03
78	GO:0048507: meristem development	5.70E-03
79	GO:0046916: cellular transition metal ion homeostasis	5.70E-03
80	GO:0006098: pentose-phosphate shunt	5.70E-03
81	GO:0042761: very long-chain fatty acid biosynthetic process	6.40E-03
82	GO:0016571: histone methylation	6.40E-03
83	GO:0016573: histone acetylation	6.40E-03
84	GO:0005982: starch metabolic process	6.40E-03
85	GO:0006779: porphyrin-containing compound biosynthetic process	6.40E-03
86	GO:0035999: tetrahydrofolate interconversion	6.40E-03
87	GO:0009086: methionine biosynthetic process	6.40E-03
88	GO:1900865: chloroplast RNA modification	6.40E-03
89	GO:0006782: protoporphyrinogen IX biosynthetic process	7.12E-03
90	GO:0019538: protein metabolic process	7.12E-03
91	GO:0006535: cysteine biosynthetic process from serine	7.12E-03
92	GO:0048829: root cap development	7.12E-03
93	GO:0016441: posttranscriptional gene silencing	7.12E-03
94	GO:0006949: syncytium formation	7.12E-03
95	GO:0009750: response to fructose	7.88E-03
96	GO:0016485: protein processing	7.88E-03
97	GO:0048765: root hair cell differentiation	7.88E-03
98	GO:0042546: cell wall biogenesis	8.46E-03
99	GO:0005983: starch catabolic process	8.66E-03
100	GO:0030048: actin filament-based movement	9.47E-03
101	GO:0009725: response to hormone	9.47E-03
102	GO:0006094: gluconeogenesis	9.47E-03
103	GO:0071555: cell wall organization	1.00E-02
104	GO:0009664: plant-type cell wall organization	1.02E-02
105	GO:0010020: chloroplast fission	1.03E-02
106	GO:0010207: photosystem II assembly	1.03E-02
107	GO:0009266: response to temperature stimulus	1.03E-02
108	GO:0048467: gynoecium development	1.03E-02
109	GO:0009736: cytokinin-activated signaling pathway	1.10E-02
110	GO:0009825: multidimensional cell growth	1.12E-02
111	GO:0010025: wax biosynthetic process	1.21E-02
112	GO:0006338: chromatin remodeling	1.30E-02
113	GO:0019344: cysteine biosynthetic process	1.30E-02
114	GO:0043622: cortical microtubule organization	1.39E-02
115	GO:0006418: tRNA aminoacylation for protein translation	1.39E-02
116	GO:0003333: amino acid transmembrane transport	1.49E-02
117	GO:0016998: cell wall macromolecule catabolic process	1.49E-02
118	GO:0035428: hexose transmembrane transport	1.59E-02
119	GO:0006730: one-carbon metabolic process	1.59E-02
120	GO:0071215: cellular response to abscisic acid stimulus	1.69E-02
121	GO:0006284: base-excision repair	1.79E-02
122	GO:0010091: trichome branching	1.79E-02
123	GO:0042127: regulation of cell proliferation	1.79E-02
124	GO:0010584: pollen exine formation	1.79E-02
125	GO:0070417: cellular response to cold	1.90E-02
126	GO:0016117: carotenoid biosynthetic process	1.90E-02
127	GO:0034220: ion transmembrane transport	2.01E-02
128	GO:0010501: RNA secondary structure unwinding	2.01E-02
129	GO:0010087: phloem or xylem histogenesis	2.01E-02
130	GO:0000226: microtubule cytoskeleton organization	2.01E-02
131	GO:0046323: glucose import	2.12E-02
132	GO:0009741: response to brassinosteroid	2.12E-02
133	GO:0009845: seed germination	2.13E-02
134	GO:0048544: recognition of pollen	2.23E-02
135	GO:0007018: microtubule-based movement	2.23E-02
136	GO:0048825: cotyledon development	2.34E-02
137	GO:0009749: response to glucose	2.34E-02
138	GO:0031047: gene silencing by RNA	2.58E-02
139	GO:0040008: regulation of growth	2.59E-02
140	GO:0045490: pectin catabolic process	2.71E-02
141	GO:0009451: RNA modification	2.78E-02
142	GO:0010252: auxin homeostasis	2.82E-02
143	GO:0006464: cellular protein modification process	2.82E-02
144	GO:0006914: autophagy	2.82E-02
145	GO:0051607: defense response to virus	3.07E-02
146	GO:0006470: protein dephosphorylation	3.10E-02
147	GO:0009911: positive regulation of flower development	3.19E-02
148	GO:0001666: response to hypoxia	3.19E-02
149	GO:0010027: thylakoid membrane organization	3.19E-02
150	GO:0010029: regulation of seed germination	3.32E-02
151	GO:0015995: chlorophyll biosynthetic process	3.59E-02
152	GO:0048481: plant ovule development	3.86E-02
153	GO:0018298: protein-chromophore linkage	3.86E-02
154	GO:0010311: lateral root formation	4.00E-02
155	GO:0009832: plant-type cell wall biogenesis	4.00E-02
156	GO:0009826: unidimensional cell growth	4.03E-02
157	GO:0006499: N-terminal protein myristoylation	4.14E-02
158	GO:0009793: embryo development ending in seed dormancy	4.14E-02
159	GO:0007568: aging	4.28E-02
160	GO:0009910: negative regulation of flower development	4.28E-02
161	GO:0006865: amino acid transport	4.42E-02
162	GO:0006970: response to osmotic stress	4.50E-02

Rank	GO Term	Adjusted P value
1	GO:0004561: alpha-N-acetylglucosaminidase activity	0.00E+00
2	GO:0010357: homogentisate solanesyltransferase activity	0.00E+00
3	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
4	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
5	GO:0016636: oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor	0.00E+00
6	GO:0010355: homogentisate farnesyltransferase activity	0.00E+00
7	GO:0010356: homogentisate geranylgeranyltransferase activity	0.00E+00
8	GO:0050619: phytochromobilin:ferredoxin oxidoreductase activity	0.00E+00
9	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	2.34E-05
10	GO:0008568: microtubule-severing ATPase activity	2.48E-04
11	GO:0019203: carbohydrate phosphatase activity	2.48E-04
12	GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity	2.48E-04
13	GO:0015088: copper uptake transmembrane transporter activity	2.48E-04
14	GO:0004830: tryptophan-tRNA ligase activity	2.48E-04
15	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	2.48E-04
16	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	2.48E-04
17	GO:0042834: peptidoglycan binding	2.48E-04
18	GO:0009884: cytokinin receptor activity	5.49E-04
19	GO:0050017: L-3-cyanoalanine synthase activity	5.49E-04
20	GO:0017118: lipoyltransferase activity	5.49E-04
21	GO:0016415: octanoyltransferase activity	5.49E-04
22	GO:0005096: GTPase activator activity	6.60E-04
23	GO:0004557: alpha-galactosidase activity	8.92E-04
24	GO:0005034: osmosensor activity	8.92E-04
25	GO:0052692: raffinose alpha-galactosidase activity	8.92E-04
26	GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups	8.92E-04
27	GO:0003913: DNA photolyase activity	8.92E-04
28	GO:0043424: protein histidine kinase binding	1.20E-03
29	GO:0043621: protein self-association	1.26E-03
30	GO:0001872: (1->3)-beta-D-glucan binding	1.27E-03
31	GO:0030570: pectate lyase activity	1.57E-03
32	GO:0004845: uracil phosphoribosyltransferase activity	1.70E-03
33	GO:0010011: auxin binding	1.70E-03
34	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	1.70E-03
35	GO:0010328: auxin influx transmembrane transporter activity	1.70E-03
36	GO:0005471: ATP:ADP antiporter activity	2.17E-03
37	GO:0008725: DNA-3-methyladenine glycosylase activity	2.17E-03
38	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.64E-03
39	GO:2001070: starch binding	2.67E-03
40	GO:0004332: fructose-bisphosphate aldolase activity	2.67E-03
41	GO:0051015: actin filament binding	3.01E-03
42	GO:0004017: adenylate kinase activity	3.21E-03
43	GO:0004849: uridine kinase activity	3.21E-03
44	GO:0019900: kinase binding	3.21E-03
45	GO:0004124: cysteine synthase activity	3.21E-03
46	GO:0009881: photoreceptor activity	3.79E-03
47	GO:0030247: polysaccharide binding	4.49E-03
48	GO:0004721: phosphoprotein phosphatase activity	4.49E-03
49	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.49E-03
50	GO:0046914: transition metal ion binding	5.03E-03
51	GO:0003724: RNA helicase activity	5.03E-03
52	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	5.70E-03
53	GO:0009672: auxin:proton symporter activity	6.40E-03
54	GO:0005381: iron ion transmembrane transporter activity	6.40E-03
55	GO:0004673: protein histidine kinase activity	7.12E-03
56	GO:0005515: protein binding	7.84E-03
57	GO:0004161: dimethylallyltranstransferase activity	7.88E-03
58	GO:0010329: auxin efflux transmembrane transporter activity	9.47E-03
59	GO:0000155: phosphorelay sensor kinase activity	9.47E-03
60	GO:0003774: motor activity	1.03E-02
61	GO:0051536: iron-sulfur cluster binding	1.30E-02
62	GO:0051087: chaperone binding	1.39E-02
63	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.69E-02
64	GO:0004812: aminoacyl-tRNA ligase activity	1.90E-02
65	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	2.12E-02
66	GO:0016829: lyase activity	2.13E-02
67	GO:0004519: endonuclease activity	2.18E-02
68	GO:0010181: FMN binding	2.23E-02
69	GO:0005355: glucose transmembrane transporter activity	2.23E-02
70	GO:0050662: coenzyme binding	2.23E-02
71	GO:0005524: ATP binding	2.25E-02
72	GO:0004872: receptor activity	2.34E-02
73	GO:0000156: phosphorelay response regulator activity	2.70E-02
74	GO:0008017: microtubule binding	2.84E-02
75	GO:0005200: structural constituent of cytoskeleton	2.94E-02
76	GO:0015250: water channel activity	3.19E-02
77	GO:0042802: identical protein binding	3.44E-02
78	GO:0004004: ATP-dependent RNA helicase activity	3.59E-02
79	GO:0008236: serine-type peptidase activity	3.72E-02
80	GO:0016301: kinase activity	4.08E-02
81	GO:0004222: metalloendopeptidase activity	4.14E-02
82	GO:0050897: cobalt ion binding	4.28E-02

Rank	GO Term	Adjusted P value
1	GO:0035452: extrinsic component of plastid membrane	0.00E+00
2	GO:0009507: chloroplast	1.24E-11
3	GO:0009570: chloroplast stroma	1.07E-07
4	GO:0009941: chloroplast envelope	1.10E-05
5	GO:0045254: pyruvate dehydrogenase complex	5.49E-04
6	GO:0032432: actin filament bundle	1.27E-03
7	GO:0009535: chloroplast thylakoid membrane	1.69E-03
8	GO:0009526: plastid envelope	1.70E-03
9	GO:0031897: Tic complex	1.70E-03
10	GO:0055035: plastid thylakoid membrane	2.17E-03
11	GO:0042807: central vacuole	3.79E-03
12	GO:0009986: cell surface	3.79E-03
13	GO:0005759: mitochondrial matrix	4.62E-03
14	GO:0000326: protein storage vacuole	5.03E-03
15	GO:0010494: cytoplasmic stress granule	5.70E-03
16	GO:0016459: myosin complex	7.12E-03
17	GO:0046658: anchored component of plasma membrane	7.45E-03
18	GO:0005884: actin filament	7.88E-03
19	GO:0000311: plastid large ribosomal subunit	8.66E-03
20	GO:0009574: preprophase band	9.47E-03
21	GO:0005578: proteinaceous extracellular matrix	9.47E-03
22	GO:0030095: chloroplast photosystem II	1.03E-02
23	GO:0005886: plasma membrane	1.03E-02
24	GO:0005874: microtubule	1.14E-02
25	GO:0031969: chloroplast membrane	1.20E-02
26	GO:0009654: photosystem II oxygen evolving complex	1.39E-02
27	GO:0009579: thylakoid	1.46E-02
28	GO:0009534: chloroplast thylakoid	1.48E-02
29	GO:0009505: plant-type cell wall	1.48E-02
30	GO:0009532: plastid stroma	1.49E-02
31	GO:0009706: chloroplast inner membrane	1.57E-02
32	GO:0015629: actin cytoskeleton	1.69E-02
33	GO:0010287: plastoglobule	1.86E-02
34	GO:0005871: kinesin complex	1.90E-02
35	GO:0031225: anchored component of membrane	2.17E-02
36	GO:0031965: nuclear membrane	2.34E-02
37	GO:0019898: extrinsic component of membrane	2.34E-02
38	GO:0030529: intracellular ribonucleoprotein complex	3.19E-02
39	GO:0009707: chloroplast outer membrane	3.86E-02
40	GO:0015934: large ribosomal subunit	4.28E-02